LmjF.32.1310 | WLM domain containing protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

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  • Curated_GO_Component_IDs:  GO:0097014      GO:0005737      GO:0031981      

  • Curated_GO_Components:  ciliary plasm      cytoplasm      nuclear lumen      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

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No Results
No Results

  • Fasta :-

    >LmjF.32.1310 MEHVLHRARVLLPRRGWRIGLIKEFYPRGATLLGLNVNAGSEVCIRFRVPGKKNEFLPFH EVLCTALHEFTHCVHSRHDRAFWNLYYDLVKECEALEITMIQQGMRLYPAISSTPMSCTG TASQQSRSGREGRTAATASSARGGGRRLGNGGARGGGRGAGGGMSTGSRHVAQTVIKAGR AVSSSSSSPPSSAAFPGEGRRLGGGGFRQYDAPIGFTPTRDALRRILAGAAERRLARTPP LAATVTLGSHPLALSLHNTTFPQRDEGQSEVDDDDAPDCVPHSLSGHEDGGGWNCPRCGF RNDDNVVGSCAFCADCDDEDEGEATWRKRPRLDSDHSPLETPTIVVSLATASKTAPTQQL QQQQLECTAEEHYIVVSDEDDS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/453 Sequence name : 453 Sequence length : 382 VALUES OF COMPUTED PARAMETERS Coef20 : 4.343 CoefTot : -1.039 ChDiff : -2 ZoneTo : 41 KR : 7 DE : 2 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.329 1.106 0.130 0.489 MesoH : -0.756 0.055 -0.373 0.111 MuHd_075 : 55.018 24.812 12.626 12.207 MuHd_095 : 42.483 24.726 11.982 8.997 MuHd_100 : 31.158 21.020 9.225 7.176 MuHd_105 : 31.584 17.566 7.529 7.210 Hmax_075 : 17.500 10.237 3.052 5.574 Hmax_095 : 1.900 13.200 0.616 2.540 Hmax_100 : 3.400 17.400 1.079 3.920 Hmax_105 : -1.800 17.700 -1.919 2.340 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2096 0.7904 DFMC : 0.2788 0.7212 This protein is probably imported in mitochondria. f(Ser) = 0.0244 f(Arg) = 0.1463 CMi = 0.08873 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 382 LmjF.32.1310 MEHVLHRARVLLPRRGWRIGLIKEFYPRGATLLGLNVNAGSEVCIRFRVPGKKNEFLPFHEVLCTALHEFTHCVHSRHDR 80 AFWNLYYDLVKECEALEITMIQQGMRLYPAISSTPMSCTGTASQQSRSGREGRTAATASSARGGGRRLGNGGARGGGRGA 160 GGGMSTGSRHVAQTVIKAGRAVSSSSSSPPSSAAFPGEGRRLGGGGFRQYDAPIGFTPTRDALRRILAGAAERRLARTPP 240 LAATVTLGSHPLALSLHNTTFPQRDEGQSEVDDDDAPDCVPHSLSGHEDGGGWNCPRCGFRNDDNVVGSCAFCADCDDED 320 EGEATWRKRPRLDSDHSPLETPTIVVSLATASKTAPTQQLQQQQLECTAEEHYIVVSDEDDS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.32.1310 7 MEHVLHR|AR 0.074 . LmjF.32.1310 9 HVLHRAR|VL 0.077 . LmjF.32.1310 14 ARVLLPR|RG 0.088 . LmjF.32.1310 15 RVLLPRR|GW 0.139 . LmjF.32.1310 18 LPRRGWR|IG 0.255 . LmjF.32.1310 23 WRIGLIK|EF 0.070 . LmjF.32.1310 28 IKEFYPR|GA 0.105 . LmjF.32.1310 46 GSEVCIR|FR 0.095 . LmjF.32.1310 48 EVCIRFR|VP 0.087 . LmjF.32.1310 52 RFRVPGK|KN 0.069 . LmjF.32.1310 53 FRVPGKK|NE 0.088 . LmjF.32.1310 77 THCVHSR|HD 0.115 . LmjF.32.1310 80 VHSRHDR|AF 0.329 . LmjF.32.1310 91 LYYDLVK|EC 0.068 . LmjF.32.1310 106 MIQQGMR|LY 0.083 . LmjF.32.1310 127 TASQQSR|SG 0.249 . LmjF.32.1310 130 QQSRSGR|EG 0.403 . LmjF.32.1310 133 RSGREGR|TA 0.385 . LmjF.32.1310 142 ATASSAR|GG 0.115 . LmjF.32.1310 146 SARGGGR|RL 0.126 . LmjF.32.1310 147 ARGGGRR|LG 0.137 . LmjF.32.1310 154 LGNGGAR|GG 0.123 . LmjF.32.1310 158 GARGGGR|GA 0.231 . LmjF.32.1310 169 GMSTGSR|HV 0.125 . LmjF.32.1310 177 VAQTVIK|AG 0.069 . LmjF.32.1310 180 TVIKAGR|AV 0.155 . LmjF.32.1310 200 AFPGEGR|RL 0.096 . LmjF.32.1310 201 FPGEGRR|LG 0.175 . LmjF.32.1310 208 LGGGGFR|QY 0.086 . LmjF.32.1310 220 IGFTPTR|DA 0.107 . LmjF.32.1310 224 PTRDALR|RI 0.080 . LmjF.32.1310 225 TRDALRR|IL 0.155 . LmjF.32.1310 233 LAGAAER|RL 0.071 . LmjF.32.1310 234 AGAAERR|LA 0.145 . LmjF.32.1310 237 AERRLAR|TP 0.167 . LmjF.32.1310 264 NTTFPQR|DE 0.130 . LmjF.32.1310 297 GGWNCPR|CG 0.086 . LmjF.32.1310 301 CPRCGFR|ND 0.107 . LmjF.32.1310 327 EGEATWR|KR 0.071 . LmjF.32.1310 328 GEATWRK|RP 0.065 . LmjF.32.1310 329 EATWRKR|PR 0.169 . LmjF.32.1310 331 TWRKRPR|LD 0.137 . LmjF.32.1310 353 SLATASK|TA 0.074 . ____________________________^_________________

  • Fasta :-

    >LmjF.32.1310 ATGGAACACGTTTTGCATCGTGCCCGTGTGCTGCTCCCGCGTCGCGGCTGGCGCATCGGT CTCATCAAGGAATTCTACCCGCGCGGAGCCACACTGCTTGGACTCAATGTGAATGCCGGC AGCGAGGTATGCATTCGCTTCCGTGTTCCCGGCAAGAAAAACGAGTTCCTGCCATTTCAT GAAGTGCTGTGCACAGCCTTGCACGAGTTCACGCACTGTGTGCACTCGCGGCACGATCGT GCCTTCTGGAACCTCTACTACGATTTGGTCAAGGAATGCGAGGCGCTGGAAATCACCATG ATCCAGCAGGGCATGCGGCTCTACCCGGCAATCTCCTCCACACCCATGAGCTGCACCGGC ACTGCGTCTCAGCAAAGTCGCTCTGGTCGTGAGGGCAGGACTGCAGCAACGGCCAGTAGC GCTCGAGGTGGAGGCCGTCGCCTCGGTAACGGGGGCGCCAGAGGAGGCGGTAGGGGAGCA GGGGGTGGGATGAGCACGGGCAGTCGCCATGTCGCACAAACCGTCATCAAGGCCGGTCGC GCCGTCTCCAGCAGCAGCTCTTCGCCGCCGAGCAGTGCGGCTTTTCCTGGAGAGGGTCGC CGCCTCGGCGGCGGCGGTTTCCGCCAGTACGACGCCCCGATCGGTTTCACCCCGACACGG GACGCGCTGCGCCGAATCCTTGCCGGCGCGGCAGAGAGACGTCTTGCGCGGACGCCGCCG TTAGCAGCAACCGTAACGCTGGGATCGCATCCACTAGCTCTCTCACTTCACAACACCACT TTCCCGCAACGAGATGAGGGGCAATCTGAGGTGGATGATGACGACGCGCCGGACTGCGTC CCGCATAGCCTTTCGGGTCACGAGGATGGTGGTGGTTGGAATTGCCCACGTTGCGGTTTC CGCAACGATGATAACGTGGTCGGTAGCTGCGCGTTCTGCGCTGATTGCGATGACGAGGAC GAAGGGGAGGCGACATGGAGAAAGCGGCCTCGACTCGACAGCGATCACTCACCACTGGAA ACGCCCACGATAGTCGTCTCCTTGGCCACAGCGTCGAAGACGGCGCCTACGCAGCAGTTG CAACAGCAGCAGCTCGAGTGCACAGCAGAAGAGCACTATATTGTCGTGAGCGACGAAGAC GACAGCTAG
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.32.1310188 SSSSSSPPSS0.993unspLmjF.32.1310188 SSSSSSPPSS0.993unspLmjF.32.1310188 SSSSSSPPSS0.993unspLmjF.32.1310269 SDEGQSEVDD0.997unspLmjF.32.1310337 SDSDHSPLET0.997unspLmjF.32.1310377 SYIVVSDEDD0.99unspLmjF.32.131076 SHCVHSRHDR0.991unspLmjF.32.1310128 SQQSRSGREG0.997unsp

LmjF.32.1310      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India