LmjF.32.1500 | Metalloprotease M41 FtsH, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.32.1500OTHER0.9999670.0000280.000005
No Results

  • Fasta :-

    >LmjF.32.1500 MNQNDPSPGGSLFQQMYSAQQQQQQMPPPQAYGGQLSLQPPPTPQPQKSSQGDGYAQNPY TVPREGIGAPPSIYTGYNYQPQQMIPQQYSYAAQQQQQPARMPPVYQPPVQDDDYYKGFH DGVVRPSGPVWGSAVSWVVPLVVNVAFFVGPIWYFRRKYMHAMASATGSAAASGGKGGAG GSSNMMSGLMEMMNPMKPKNFRTEVKGTTFKDVIGIPEAKEELKQYVDFLKEPSKFTRLG ARLPKGCLLTGQPGTGKTLLARAVAGEASTPFFSCSGADFIEIFGGSGPKRVRELFEEAK KAAPCVVFIDEIDAIGSRNQGGRSMGGGGSSEENRTINQLLAELDGLTSKEAIVVIAATN YPEAIDKALLREGRFDRKVTIPMPDHKARCELFEFYLNRIITGDPNCKPKVQVFKTRNEA EAGGSGAAQASPSSTLASSEKAATETKALVTEDAKPESIKVIPGVSNKEYAVVLSDRTPG VSPAQISTIVNEGALNAAANGKEVVPLEVLQDSIDDVLIGKKHRQRMSNASLHRTAYHEV GHCIMAWTNPLQKDVIKLSIIPRGRAGGYTQQVQDEAMEPQTDEFLFSQLCVLMGGRAAE RIFEKDISIGAMDDLQRATRLAMEKLLKYGMSKTIGQLAFKPNDKNDGRAWMTWSENLHA KVEAEARALVESAYVHTEKTLLAHKDKHQKLAELLLGKKELDKADIAGILGARPVLKA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/623 Sequence name : 623 Sequence length : 718 VALUES OF COMPUTED PARAMETERS Coef20 : 2.938 CoefTot : -5.718 ChDiff : 5 ZoneTo : 52 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.771 2.071 0.223 0.805 MesoH : 0.455 0.435 -0.191 0.318 MuHd_075 : 20.251 13.212 6.642 4.045 MuHd_095 : 12.101 13.688 4.076 4.522 MuHd_100 : 15.768 15.747 4.395 4.255 MuHd_105 : 19.342 19.065 5.631 5.318 Hmax_075 : 7.933 2.200 -0.381 2.290 Hmax_095 : 4.500 3.150 -1.305 3.098 Hmax_100 : 3.100 1.700 -2.626 2.340 Hmax_105 : 4.000 10.150 -0.652 1.780 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9956 0.0044 DFMC : 0.9972 0.0028
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 718 LmjF.32.1500 MNQNDPSPGGSLFQQMYSAQQQQQQMPPPQAYGGQLSLQPPPTPQPQKSSQGDGYAQNPYTVPREGIGAPPSIYTGYNYQ 80 PQQMIPQQYSYAAQQQQQPARMPPVYQPPVQDDDYYKGFHDGVVRPSGPVWGSAVSWVVPLVVNVAFFVGPIWYFRRKYM 160 HAMASATGSAAASGGKGGAGGSSNMMSGLMEMMNPMKPKNFRTEVKGTTFKDVIGIPEAKEELKQYVDFLKEPSKFTRLG 240 ARLPKGCLLTGQPGTGKTLLARAVAGEASTPFFSCSGADFIEIFGGSGPKRVRELFEEAKKAAPCVVFIDEIDAIGSRNQ 320 GGRSMGGGGSSEENRTINQLLAELDGLTSKEAIVVIAATNYPEAIDKALLREGRFDRKVTIPMPDHKARCELFEFYLNRI 400 ITGDPNCKPKVQVFKTRNEAEAGGSGAAQASPSSTLASSEKAATETKALVTEDAKPESIKVIPGVSNKEYAVVLSDRTPG 480 VSPAQISTIVNEGALNAAANGKEVVPLEVLQDSIDDVLIGKKHRQRMSNASLHRTAYHEVGHCIMAWTNPLQKDVIKLSI 560 IPRGRAGGYTQQVQDEAMEPQTDEFLFSQLCVLMGGRAAERIFEKDISIGAMDDLQRATRLAMEKLLKYGMSKTIGQLAF 640 KPNDKNDGRAWMTWSENLHAKVEAEARALVESAYVHTEKTLLAHKDKHQKLAELLLGKKELDKADIAGILGARPVLKA 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .............................................................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.32.1500 48 PTPQPQK|SS 0.074 . LmjF.32.1500 64 NPYTVPR|EG 0.117 . LmjF.32.1500 101 QQQQPAR|MP 0.102 . LmjF.32.1500 117 QDDDYYK|GF 0.074 . LmjF.32.1500 125 FHDGVVR|PS 0.099 . LmjF.32.1500 156 GPIWYFR|RK 0.083 . LmjF.32.1500 157 PIWYFRR|KY 0.156 . LmjF.32.1500 158 IWYFRRK|YM 0.102 . LmjF.32.1500 176 AAASGGK|GG 0.061 . LmjF.32.1500 197 EMMNPMK|PK 0.060 . LmjF.32.1500 199 MNPMKPK|NF 0.086 . LmjF.32.1500 202 MKPKNFR|TE 0.096 . LmjF.32.1500 206 NFRTEVK|GT 0.069 . LmjF.32.1500 211 VKGTTFK|DV 0.101 . LmjF.32.1500 220 IGIPEAK|EE 0.060 . LmjF.32.1500 224 EAKEELK|QY 0.064 . LmjF.32.1500 231 QYVDFLK|EP 0.060 . LmjF.32.1500 235 FLKEPSK|FT 0.067 . LmjF.32.1500 238 EPSKFTR|LG 0.101 . LmjF.32.1500 242 FTRLGAR|LP 0.084 . LmjF.32.1500 245 LGARLPK|GC 0.104 . LmjF.32.1500 257 GQPGTGK|TL 0.057 . LmjF.32.1500 262 GKTLLAR|AV 0.133 . LmjF.32.1500 290 FGGSGPK|RV 0.066 . LmjF.32.1500 291 GGSGPKR|VR 0.204 . LmjF.32.1500 293 SGPKRVR|EL 0.085 . LmjF.32.1500 300 ELFEEAK|KA 0.068 . LmjF.32.1500 301 LFEEAKK|AA 0.089 . LmjF.32.1500 318 IDAIGSR|NQ 0.077 . LmjF.32.1500 323 SRNQGGR|SM 0.373 . LmjF.32.1500 335 GSSEENR|TI 0.141 . LmjF.32.1500 350 LDGLTSK|EA 0.069 . LmjF.32.1500 367 YPEAIDK|AL 0.064 . LmjF.32.1500 371 IDKALLR|EG 0.073 . LmjF.32.1500 374 ALLREGR|FD 0.247 . LmjF.32.1500 377 REGRFDR|KV 0.396 . LmjF.32.1500 378 EGRFDRK|VT 0.083 . LmjF.32.1500 387 IPMPDHK|AR 0.064 . LmjF.32.1500 389 MPDHKAR|CE 0.101 . LmjF.32.1500 399 FEFYLNR|II 0.093 . LmjF.32.1500 408 TGDPNCK|PK 0.065 . LmjF.32.1500 410 DPNCKPK|VQ 0.068 . LmjF.32.1500 415 PKVQVFK|TR 0.073 . LmjF.32.1500 417 VQVFKTR|NE 0.118 . LmjF.32.1500 441 TLASSEK|AA 0.075 . LmjF.32.1500 447 KAATETK|AL 0.066 . LmjF.32.1500 455 LVTEDAK|PE 0.058 . LmjF.32.1500 460 AKPESIK|VI 0.063 . LmjF.32.1500 468 IPGVSNK|EY 0.073 . LmjF.32.1500 477 AVVLSDR|TP 0.097 . LmjF.32.1500 502 NAAANGK|EV 0.086 . LmjF.32.1500 521 DDVLIGK|KH 0.057 . LmjF.32.1500 522 DVLIGKK|HR 0.067 . LmjF.32.1500 524 LIGKKHR|QR 0.086 . LmjF.32.1500 526 GKKHRQR|MS 0.131 . LmjF.32.1500 534 SNASLHR|TA 0.119 . LmjF.32.1500 553 WTNPLQK|DV 0.079 . LmjF.32.1500 557 LQKDVIK|LS 0.061 . LmjF.32.1500 563 KLSIIPR|GR 0.123 . LmjF.32.1500 565 SIIPRGR|AG 0.095 . LmjF.32.1500 597 CVLMGGR|AA 0.088 . LmjF.32.1500 601 GGRAAER|IF 0.092 . LmjF.32.1500 605 AERIFEK|DI 0.101 . LmjF.32.1500 617 AMDDLQR|AT 0.080 . LmjF.32.1500 620 DLQRATR|LA 0.250 . LmjF.32.1500 625 TRLAMEK|LL 0.065 . LmjF.32.1500 628 AMEKLLK|YG 0.060 . LmjF.32.1500 633 LKYGMSK|TI 0.073 . LmjF.32.1500 641 IGQLAFK|PN 0.064 . LmjF.32.1500 645 AFKPNDK|ND 0.067 . LmjF.32.1500 649 NDKNDGR|AW 0.089 . LmjF.32.1500 661 SENLHAK|VE 0.072 . LmjF.32.1500 667 KVEAEAR|AL 0.087 . LmjF.32.1500 679 AYVHTEK|TL 0.063 . LmjF.32.1500 685 KTLLAHK|DK 0.070 . LmjF.32.1500 687 LLAHKDK|HQ 0.073 . LmjF.32.1500 690 HKDKHQK|LA 0.071 . LmjF.32.1500 698 AELLLGK|KE 0.053 . LmjF.32.1500 699 ELLLGKK|EL 0.077 . LmjF.32.1500 703 GKKELDK|AD 0.068 . LmjF.32.1500 713 AGILGAR|PV 0.101 . LmjF.32.1500 717 GARPVLK|A- 0.076 . ____________________________^_________________

  • Fasta :-

    >LmjF.32.1500 ATGAACCAGAATGACCCCTCGCCTGGCGGATCGCTGTTCCAGCAAATGTACAGTGCGCAG CAGCAACAGCAGCAGATGCCGCCGCCGCAGGCATACGGAGGCCAGCTTTCCCTGCAACCA CCGCCTACTCCTCAGCCGCAGAAGAGCAGCCAGGGCGACGGCTATGCACAAAACCCGTAC ACAGTTCCCCGAGAAGGCATAGGTGCGCCGCCGTCAATCTATACCGGCTACAACTACCAG CCCCAGCAAATGATACCCCAGCAGTACAGCTACGCGGCGCAGCAGCAGCAGCAGCCCGCG CGCATGCCGCCGGTGTACCAGCCGCCGGTCCAGGATGACGACTACTACAAGGGTTTCCAC GATGGCGTTGTTCGTCCCTCTGGGCCGGTTTGGGGCAGCGCCGTCAGCTGGGTTGTACCT CTTGTGGTAAACGTGGCCTTCTTTGTCGGGCCTATCTGGTACTTCCGGCGCAAGTACATG CATGCTATGGCGAGTGCAACCGGCTCCGCTGCCGCGTCAGGGGGCAAGGGTGGTGCTGGA GGCTCGTCGAACATGATGAGCGGGCTCATGGAGATGATGAACCCGATGAAGCCGAAGAAT TTCCGCACCGAGGTGAAGGGGACGACGTTCAAGGATGTTATCGGCATCCCTGAAGCGAAG GAGGAGCTGAAGCAGTACGTGGACTTCTTGAAGGAGCCGTCCAAGTTCACTCGCCTTGGC GCGCGGCTGCCGAAGGGGTGCCTGCTGACTGGACAGCCTGGCACCGGCAAGACGCTGCTG GCCCGCGCCGTGGCCGGTGAAGCGAGCACGCCGTTCTTTAGCTGCTCGGGCGCCGACTTC ATTGAGATCTTTGGCGGCAGCGGCCCAAAACGTGTGCGTGAGCTCTTCGAGGAGGCGAAG AAGGCGGCTCCATGCGTTGTGTTCATTGACGAAATTGACGCGATCGGCTCGCGCAACCAG GGTGGCCGCTCGATGGGCGGCGGCGGCAGCAGCGAGGAAAACCGCACCATCAACCAGCTT CTCGCCGAGCTTGATGGCTTGACAAGCAAGGAGGCGATTGTGGTGATTGCCGCCACAAAT TATCCGGAGGCGATCGACAAGGCGCTTCTGCGCGAGGGTCGCTTTGACCGTAAGGTGACC ATTCCCATGCCGGATCACAAGGCGCGCTGTGAGCTATTCGAGTTCTACCTCAACCGCATC ATCACTGGTGACCCGAACTGCAAGCCCAAGGTTCAGGTGTTCAAGACGCGCAATGAGGCC GAGGCGGGAGGAAGCGGTGCTGCGCAGGCGTCTCCGTCGTCTACCCTGGCCAGCAGCGAG AAGGCCGCGACAGAGACGAAGGCACTGGTCACAGAGGACGCCAAACCCGAGTCGATTAAG GTGATCCCCGGCGTGAGCAACAAGGAGTACGCTGTCGTGCTCTCCGACCGCACCCCTGGC GTGTCGCCGGCGCAGATTTCTACGATCGTCAACGAAGGCGCCCTCAACGCGGCCGCGAAT GGGAAGGAGGTGGTGCCGCTGGAGGTGCTTCAGGACAGCATCGACGACGTCCTCATCGGC AAGAAGCACCGTCAGCGCATGAGCAACGCATCGCTGCACCGCACCGCCTACCACGAAGTA GGCCACTGCATCATGGCCTGGACGAACCCGCTGCAGAAGGACGTTATTAAGCTGTCCATC ATTCCTCGTGGTCGTGCCGGCGGGTACACGCAGCAGGTGCAGGACGAGGCGATGGAGCCG CAGACGGACGAGTTTCTCTTTTCGCAGCTGTGTGTGCTTATGGGCGGCCGCGCCGCGGAG CGAATCTTCGAGAAGGACATCTCGATCGGCGCCATGGACGACCTACAGCGTGCCACGCGC TTGGCGATGGAGAAGCTGCTCAAGTACGGCATGTCTAAAACAATCGGCCAGCTCGCCTTC AAGCCAAACGATAAGAATGATGGCCGCGCGTGGATGACGTGGTCGGAGAATCTGCACGCC AAGGTGGAGGCCGAGGCCCGCGCGCTTGTCGAGTCGGCCTATGTGCACACAGAGAAGACC CTGTTAGCCCACAAGGATAAGCACCAGAAGCTGGCAGAGTTGCTGCTTGGCAAAAAAGAA CTGGACAAGGCGGACATTGCTGGCATCCTCGGCGCTCGTCCGGTGCTGAAGGCCTGA
  • Download Fasta

  • Fasta :-

    MNQNDPSPGGSLFQQMYSAQQQQQQMPPPQAYGGQLSLQPPPTPQPQKSSQGDGYAQNPY TVPREGIGAPPSIYTGYNYQPQQMIPQQYSYAAQQQQQPARMPPVYQPPVQDDDYYKGFH DGVVRPSGPVWGSAVSWVVPLVVNVAFFVGPIWYFRRKYMHAMASATGSAAASGGKGGAG GSSNMMSGLMEMMNPMKPKNFRTEVKGTTFKDVIGIPEAKEELKQYVDFLKEPSKFTRLG ARLPKGCLLTGQPGTGKTLLARAVAGEASTPFFSCSGADFIEIFGGSGPKRVRELFEEAK KAAPCVVFIDEIDAIGSRNQGGRSMGGGGSSEENRTINQLLAELDGLTSKEAIVVIAATN YPEAIDKALLREGRFDRKVTIPMPDHKARCELFEFYLNRIITGDPNCKPKVQVFKTRNEA EAGGSGAAQASPSSTLASSEKAATETKALVTEDAKPESIKVIPGVSNKEYAVVLSDRTPG VSPAQISTIVNEGALNAAANGKEVVPLEVLQDSIDDVLIGKKHRQRMSNASLHRTAYHEV GHCIMAWTNPLQKDVIKLSIIPRGRAGGYTQQVQDEAMEPQTDEFLFSQLCVLMGGRAAE RIFEKDISIGAMDDLQRATRLAMEKLLKYGMSKTIGQLAFKPNDKNDGRAWMTWSENLHA KVEAEARALVESAYVHTEKTLLAHKDKHQKLAELLLGKKELDKADIAGILGARPVLKA

  • title: ATP binding site
  • coordinates: Q252,P253,G254,T255,G256,K257,T258,L259,D310,N360
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.32.1500330 SGGGGSSEEN0.993unspLmjF.32.1500439 STLASSEKAA0.994unsp

LmjF.32.1500      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India