LmjF.32.3890 | AUT2/APG4/ATG4 cysteine peptidase, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:  GO:0008234      

  • Curated_GO_Functions:  cysteine-type peptidase activity      

  • Curated_GO_Processes:  autophagy      protein processing      

_IDPredictionOTHERSPmTPCS_Position
LmjF.32.3890OTHER0.9992830.0003160.000401
No Results

  • Fasta :-

    >LmjF.32.3890 MGTNAKVAEKTPCVDSGSLFKWWLNPSKIFRTPNRKLKNTTPVVVVGSGSHSGDGTTEFV KVATKKLLYFSYRNCFPPLPSGSTTDTHWGCLVRTTQMLVGTCLLRYHCKGAYVLPEADN AELKERISRLFMDVPSAPLGIHKAEDEAHKNSVKYASMLSPTEAGMAIAAALIAFRAQGG DVPFTFCCESRHIDEPAVMAKLLEGQHVVLIIPVVLGIAPMSDQYELVMLKILDVKACCG IAGGFKQASLYMFGHQGRSVFFMDPHYVQNAYTSSRTVGTLEGSRGELRARRFDPCMVLG FYLHTPEDYRVFAEELAVANSLVVFPLISFGRRPREGTTLSEDRVVSVAESAESITLHEK EKPQRSRNPLAADGEHARSSNSISSPPS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/591 Sequence name : 591 Sequence length : 388 VALUES OF COMPUTED PARAMETERS Coef20 : 3.643 CoefTot : -0.215 ChDiff : 4 ZoneTo : 8 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.459 1.935 0.168 0.711 MesoH : 0.007 0.859 -0.181 0.357 MuHd_075 : 26.350 8.557 8.393 3.913 MuHd_095 : 7.319 0.266 1.755 1.319 MuHd_100 : 7.311 4.390 0.496 1.465 MuHd_105 : 14.200 9.780 2.503 2.966 Hmax_075 : 9.200 5.400 2.580 3.040 Hmax_095 : 1.575 1.488 -0.329 1.619 Hmax_100 : 0.400 2.000 -0.643 1.560 Hmax_105 : 7.200 7.100 0.384 2.450 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9638 0.0362 DFMC : 0.9362 0.0638
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 388 LmjF.32.3890 MGTNAKVAEKTPCVDSGSLFKWWLNPSKIFRTPNRKLKNTTPVVVVGSGSHSGDGTTEFVKVATKKLLYFSYRNCFPPLP 80 SGSTTDTHWGCLVRTTQMLVGTCLLRYHCKGAYVLPEADNAELKERISRLFMDVPSAPLGIHKAEDEAHKNSVKYASMLS 160 PTEAGMAIAAALIAFRAQGGDVPFTFCCESRHIDEPAVMAKLLEGQHVVLIIPVVLGIAPMSDQYELVMLKILDVKACCG 240 IAGGFKQASLYMFGHQGRSVFFMDPHYVQNAYTSSRTVGTLEGSRGELRARRFDPCMVLGFYLHTPEDYRVFAEELAVAN 320 SLVVFPLISFGRRPREGTTLSEDRVVSVAESAESITLHEKEKPQRSRNPLAADGEHARSSNSISSPPS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.32.3890 6 -MGTNAK|VA 0.069 . LmjF.32.3890 10 NAKVAEK|TP 0.057 . LmjF.32.3890 21 DSGSLFK|WW 0.056 . LmjF.32.3890 28 WWLNPSK|IF 0.059 . LmjF.32.3890 31 NPSKIFR|TP 0.118 . LmjF.32.3890 35 IFRTPNR|KL 0.093 . LmjF.32.3890 36 FRTPNRK|LK 0.070 . LmjF.32.3890 38 TPNRKLK|NT 0.243 . LmjF.32.3890 61 GTTEFVK|VA 0.065 . LmjF.32.3890 65 FVKVATK|KL 0.051 . LmjF.32.3890 66 VKVATKK|LL 0.096 . LmjF.32.3890 73 LLYFSYR|NC 0.113 . LmjF.32.3890 94 HWGCLVR|TT 0.088 . LmjF.32.3890 106 VGTCLLR|YH 0.075 . LmjF.32.3890 110 LLRYHCK|GA 0.083 . LmjF.32.3890 124 ADNAELK|ER 0.062 . LmjF.32.3890 126 NAELKER|IS 0.083 . LmjF.32.3890 129 LKERISR|LF 0.245 . LmjF.32.3890 143 APLGIHK|AE 0.065 . LmjF.32.3890 150 AEDEAHK|NS 0.058 . LmjF.32.3890 154 AHKNSVK|YA 0.079 . LmjF.32.3890 176 AALIAFR|AQ 0.089 . LmjF.32.3890 191 TFCCESR|HI 0.113 . LmjF.32.3890 201 EPAVMAK|LL 0.092 . LmjF.32.3890 231 YELVMLK|IL 0.058 . LmjF.32.3890 236 LKILDVK|AC 0.066 . LmjF.32.3890 246 GIAGGFK|QA 0.074 . LmjF.32.3890 258 MFGHQGR|SV 0.238 . LmjF.32.3890 276 NAYTSSR|TV 0.179 . LmjF.32.3890 285 GTLEGSR|GE 0.064 . LmjF.32.3890 289 GSRGELR|AR 0.081 . LmjF.32.3890 291 RGELRAR|RF 0.089 . LmjF.32.3890 292 GELRARR|FD 0.329 . LmjF.32.3890 310 HTPEDYR|VF 0.072 . LmjF.32.3890 332 PLISFGR|RP 0.083 . LmjF.32.3890 333 LISFGRR|PR 0.140 . LmjF.32.3890 335 SFGRRPR|EG 0.202 . LmjF.32.3890 344 TTLSEDR|VV 0.143 . LmjF.32.3890 360 SITLHEK|EK 0.056 . LmjF.32.3890 362 TLHEKEK|PQ 0.067 . LmjF.32.3890 365 EKEKPQR|SR 0.109 . LmjF.32.3890 367 EKPQRSR|NP 0.087 . LmjF.32.3890 378 ADGEHAR|SS 0.131 . ____________________________^_________________

  • Fasta :-

    >LmjF.32.3890 ATGGGCACGAACGCCAAAGTGGCAGAGAAGACGCCGTGCGTCGACTCAGGCAGCCTTTTC AAGTGGTGGCTCAACCCCAGCAAGATCTTCCGCACCCCCAACCGCAAGCTGAAAAATACG ACGCCTGTCGTCGTGGTGGGCTCAGGCTCACATAGCGGCGATGGGACGACGGAGTTTGTG AAGGTGGCAACGAAGAAGCTCCTCTACTTCTCCTACCGCAACTGCTTCCCTCCCTTGCCG AGCGGGTCTACAACGGACACCCACTGGGGCTGTCTTGTGCGCACCACGCAAATGCTTGTT GGCACCTGCCTTCTGCGATACCACTGCAAAGGCGCCTACGTGCTGCCAGAGGCGGACAAC GCTGAGCTGAAGGAGAGGATATCGAGGTTGTTCATGGACGTCCCGTCCGCCCCACTTGGG ATCCACAAGGCCGAGGATGAGGCTCACAAGAACAGTGTCAAATACGCCAGCATGCTGTCC CCCACCGAGGCGGGCATGGCGATCGCAGCCGCTCTGATTGCCTTTCGCGCACAAGGCGGA GATGTGCCATTCACGTTTTGCTGCGAGAGCCGCCACATTGATGAGCCGGCGGTGATGGCG AAGCTGTTGGAGGGCCAGCATGTTGTTCTTATTATCCCGGTAGTCTTGGGCATTGCACCC ATGTCGGATCAGTATGAGCTCGTGATGCTCAAGATTCTCGACGTGAAGGCGTGCTGCGGC ATCGCGGGAGGCTTCAAGCAAGCATCCTTGTACATGTTCGGTCATCAGGGCCGCAGCGTC TTTTTCATGGATCCACACTACGTCCAAAACGCCTACACCTCTAGCAGGACCGTCGGCACC CTCGAAGGGTCTCGTGGCGAGCTGAGGGCGCGCAGATTTGACCCGTGCATGGTTCTTGGC TTTTATCTTCACACCCCGGAGGATTACCGCGTGTTTGCGGAAGAACTAGCGGTGGCCAAT TCGCTCGTGGTGTTTCCACTAATCAGCTTTGGCCGAAGACCCAGGGAGGGGACGACCCTC TCCGAGGATCGCGTCGTTTCTGTGGCGGAGAGCGCGGAGAGCATTACGCTACACGAGAAA GAGAAGCCACAACGAAGCCGGAATCCGCTCGCTGCCGATGGAGAGCACGCCAGAAGCTCG AATTCAATCTCTTCTCCACCGAGCTAG
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  • Fasta :-

    MGTNAKVAEKTPCVDSGSLFKWWLNPSKIFRTPNRKLKNTTPVVVVGSGSHSGDGTTEFV KVATKKLLYFSYRNCFPPLPSGSTTDTHWGCLVRTTQMLVGTCLLRYHCKGAYVLPEADN AELKERISRLFMDVPSAPLGIHKAEDEAHKNSVKYASMLSPTEAGMAIAAALIAFRAQGG DVPFTFCCESRHIDEPAVMAKLLEGQHVVLIIPVVLGIAPMSDQYELVMLKILDVKACCG IAGGFKQASLYMFGHQGRSVFFMDPHYVQNAYTSSRTVGTLEGSRGELRARRFDPCMVLG FYLHTPEDYRVFAEELAVANSLVVFPLISFGRRPREGTTLSEDRVVSVAESAESITLHEK EKPQRSRNPLAADGEHARSSNSISSPPS

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.32.389083 SLPSGSTTDT0.992unspLmjF.32.3890347 SDRVVSVAES0.994unsp

LmjF.32.3890      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India