LmjF.33.2860 | hypothetical protein, conserved

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
LmjF.33.2860OTHER0.9999890.0000080.000003
No Results

  • Fasta :-

    >LmjF.33.2860 MSSPPQDPPDGVKSDGGGGRSRSFKPRPSPLAFPRDRAYGTLGNNNDNGGEGCSSAGVGS TRQSGLLMTSGTNRRLSSDSMPLWSYAASPIIQIRDHCHQQWLAVLLTVVLLLVTFYFVF GLSAPIRAERCATPFGSLLGESRGVAAYSNCRNDYGGDHMENFVSVGLQRLYTGSKWQAL EYTRRYWILTSLLTFPSFPRADHTILADAANAVNGRRGSRGSSVVPLERYTNLFLSSQVL QNSSEDMPVMKLNGEANNLSASVRLRNWRQALVQPHDIVVYAKNSRTLPSAHVAVVTAVR GPFHSVAAAGKEVHWFIVKNASVQGRQPMAPGSTLPQLLLSQEHEVVSGAVPPKNMTGSD TARRPSSGGCENVSADEKGEEMVRGGSVLYYKVFVAEQNWDNSNWETLSYLTRSDWHNKT NRNTITKGNSNRKESSATQQRRAATQLRNFTRVLLLHEYSNPHGFFLEDTHNNLILGWVR ASSDA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/317 Sequence name : 317 Sequence length : 485 VALUES OF COMPUTED PARAMETERS Coef20 : 2.099 CoefTot : -0.437 ChDiff : 12 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.435 2.853 0.465 0.905 MesoH : 0.181 0.668 -0.160 0.307 MuHd_075 : 9.146 6.296 2.469 1.593 MuHd_095 : 18.995 11.133 4.383 4.040 MuHd_100 : 18.461 10.943 4.485 4.170 MuHd_105 : 18.763 9.643 4.767 4.139 Hmax_075 : -2.400 -2.100 -1.340 1.280 Hmax_095 : 6.200 -0.700 -0.787 2.700 Hmax_100 : 7.000 0.100 -0.455 2.400 Hmax_105 : -0.350 -3.000 -2.257 1.120 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9989 0.0011 DFMC : 0.9978 0.0022
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 485 LmjF.33.2860 MSSPPQDPPDGVKSDGGGGRSRSFKPRPSPLAFPRDRAYGTLGNNNDNGGEGCSSAGVGSTRQSGLLMTSGTNRRLSSDS 80 MPLWSYAASPIIQIRDHCHQQWLAVLLTVVLLLVTFYFVFGLSAPIRAERCATPFGSLLGESRGVAAYSNCRNDYGGDHM 160 ENFVSVGLQRLYTGSKWQALEYTRRYWILTSLLTFPSFPRADHTILADAANAVNGRRGSRGSSVVPLERYTNLFLSSQVL 240 QNSSEDMPVMKLNGEANNLSASVRLRNWRQALVQPHDIVVYAKNSRTLPSAHVAVVTAVRGPFHSVAAAGKEVHWFIVKN 320 ASVQGRQPMAPGSTLPQLLLSQEHEVVSGAVPPKNMTGSDTARRPSSGGCENVSADEKGEEMVRGGSVLYYKVFVAEQNW 400 DNSNWETLSYLTRSDWHNKTNRNTITKGNSNRKESSATQQRRAATQLRNFTRVLLLHEYSNPHGFFLEDTHNNLILGWVR 480 ASSDA 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ..... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.33.2860 13 DPPDGVK|SD 0.100 . LmjF.33.2860 20 SDGGGGR|SR 0.130 . LmjF.33.2860 22 GGGGRSR|SF 0.112 . LmjF.33.2860 25 GRSRSFK|PR 0.177 . LmjF.33.2860 27 SRSFKPR|PS 0.153 . LmjF.33.2860 35 SPLAFPR|DR 0.117 . LmjF.33.2860 37 LAFPRDR|AY 0.116 . LmjF.33.2860 62 AGVGSTR|QS 0.098 . LmjF.33.2860 74 MTSGTNR|RL 0.087 . LmjF.33.2860 75 TSGTNRR|LS 0.179 . LmjF.33.2860 95 SPIIQIR|DH 0.165 . LmjF.33.2860 127 GLSAPIR|AE 0.115 . LmjF.33.2860 130 APIRAER|CA 0.328 . LmjF.33.2860 143 SLLGESR|GV 0.107 . LmjF.33.2860 152 AAYSNCR|ND 0.088 . LmjF.33.2860 170 VSVGLQR|LY 0.091 . LmjF.33.2860 176 RLYTGSK|WQ 0.055 . LmjF.33.2860 184 QALEYTR|RY 0.066 . LmjF.33.2860 185 ALEYTRR|YW 0.102 . LmjF.33.2860 200 TFPSFPR|AD 0.108 . LmjF.33.2860 216 ANAVNGR|RG 0.089 . LmjF.33.2860 217 NAVNGRR|GS 0.121 . LmjF.33.2860 220 NGRRGSR|GS 0.263 . LmjF.33.2860 229 SVVPLER|YT 0.090 . LmjF.33.2860 251 EDMPVMK|LN 0.078 . LmjF.33.2860 264 NLSASVR|LR 0.093 . LmjF.33.2860 266 SASVRLR|NW 0.184 . LmjF.33.2860 269 VRLRNWR|QA 0.330 . LmjF.33.2860 283 DIVVYAK|NS 0.065 . LmjF.33.2860 286 VYAKNSR|TL 0.077 . LmjF.33.2860 300 AVVTAVR|GP 0.082 . LmjF.33.2860 311 SVAAAGK|EV 0.079 . LmjF.33.2860 319 VHWFIVK|NA 0.074 . LmjF.33.2860 326 NASVQGR|QP 0.142 . LmjF.33.2860 354 SGAVPPK|NM 0.074 . LmjF.33.2860 363 TGSDTAR|RP 0.121 . LmjF.33.2860 364 GSDTARR|PS 0.167 . LmjF.33.2860 378 NVSADEK|GE 0.072 . LmjF.33.2860 384 KGEEMVR|GG 0.073 . LmjF.33.2860 392 GSVLYYK|VF 0.062 . LmjF.33.2860 413 TLSYLTR|SD 0.153 . LmjF.33.2860 419 RSDWHNK|TN 0.062 . LmjF.33.2860 422 WHNKTNR|NT 0.129 . LmjF.33.2860 427 NRNTITK|GN 0.079 . LmjF.33.2860 432 TKGNSNR|KE 0.115 . LmjF.33.2860 433 KGNSNRK|ES 0.094 . LmjF.33.2860 441 SSATQQR|RA 0.140 . LmjF.33.2860 442 SATQQRR|AA 0.239 . LmjF.33.2860 448 RAATQLR|NF 0.102 . LmjF.33.2860 452 QLRNFTR|VL 0.097 . LmjF.33.2860 480 LILGWVR|AS 0.096 . ____________________________^_________________

  • Fasta :-

    >LmjF.33.2860 ATGAGCTCGCCACCGCAGGATCCGCCGGATGGCGTTAAGAGTGACGGTGGTGGCGGCCGT AGCCGCTCTTTCAAGCCGCGGCCAAGCCCGCTCGCTTTTCCGAGAGACCGTGCCTACGGC ACCCTCGGCAACAACAACGACAACGGCGGCGAGGGCTGCAGCAGCGCTGGCGTAGGAAGC ACTCGGCAAAGTGGCCTTCTCATGACCAGCGGCACAAACAGGAGGCTCAGCAGCGATTCG ATGCCGCTGTGGAGCTACGCTGCCTCGCCCATCATTCAAATTCGAGATCACTGCCATCAG CAGTGGTTGGCGGTCCTGCTTACTGTTGTTCTGCTCCTCGTCACATTCTACTTTGTCTTC GGTCTTTCCGCTCCCATACGGGCAGAGCGGTGCGCCACGCCGTTTGGCAGTCTACTGGGC GAGAGCAGAGGTGTGGCGGCGTACAGCAACTGCCGCAATGACTACGGTGGGGATCACATG GAAAACTTCGTCTCCGTAGGGCTGCAGCGGCTCTACACCGGCTCCAAATGGCAGGCCCTC GAGTACACCCGCCGCTACTGGATCCTGACATCGCTGCTGACCTTTCCATCGTTTCCTAGG GCTGATCATACCATTCTCGCTGATGCCGCCAACGCCGTGAACGGGCGTCGTGGAAGTCGT GGCAGCTCCGTCGTTCCACTGGAGCGGTACACAAATCTTTTCCTGTCATCCCAGGTTCTG CAGAACAGCAGCGAAGATATGCCCGTTATGAAACTGAATGGAGAGGCCAACAACCTCTCA GCTAGTGTGCGGCTAAGAAACTGGCGTCAGGCACTCGTGCAGCCCCACGACATTGTCGTG TACGCCAAGAATTCGCGGACGCTGCCGTCTGCTCACGTCGCGGTTGTGACGGCGGTGCGC GGCCCCTTTCACAGCGTCGCCGCAGCCGGCAAGGAAGTGCACTGGTTTATTGTCAAGAAC GCCTCGGTACAGGGTCGGCAGCCTATGGCTCCTGGGTCGACGTTGCCACAGCTGCTTCTG TCGCAGGAGCACGAGGTTGTGAGTGGCGCCGTGCCGCCGAAGAACATGACTGGCAGTGAC ACCGCAAGGCGCCCTTCCAGCGGCGGCTGTGAGAACGTATCTGCTGACGAGAAAGGCGAG GAGATGGTGCGCGGGGGTAGCGTTCTCTACTACAAGGTGTTTGTTGCAGAGCAAAACTGG GACAATTCTAATTGGGAAACGCTGAGCTACTTGACAAGATCTGACTGGCACAACAAAACC AACCGAAACACCATAACCAAGGGCAACAGCAACAGGAAGGAGTCGTCAGCGACGCAGCAG CGAAGGGCTGCAACGCAGCTGCGCAACTTTACTCGAGTACTCCTCCTGCATGAGTACTCG AACCCGCATGGGTTCTTCCTCGAAGACACACACAACAATCTCATTCTAGGCTGGGTGCGC GCCTCTTCCGATGCGTAA
  • Download Fasta

  • Fasta :-

    MSSPPQDPPDGVKSDGGGGRSRSFKPRPSPLAFPRDRAYGTLGNNNDNGGEGCSSAGVGS TRQSGLLMTSGTNRRLSSDSMPLWSYAASPIIQIRDHCHQQWLAVLLTVVLLLVTFYFVF GLSAPIRAERCATPFGSLLGESRGVAAYSNCRNDYGGDHMENFVSVGLQRLYTGSKWQAL EYTRRYWILTSLLTFPSFPRADHTILADAANAVNGRRGSRGSSVVPLERYTNLFLSSQVL QNSSEDMPVMKLNGEANNLSASVRLRNWRQALVQPHDIVVYAKNSRTLPSAHVAVVTAVR GPFHSVAAAGKEVHWFIVKNASVQGRQPMAPGSTLPQLLLSQEHEVVSGAVPPKNMTGSD TARRPSSGGCENVSADEKGEEMVRGGSVLYYKVFVAEQNWDNSNWETLSYLTRSDWHNKT NRNTITKGNSNRKESSATQQRRAATQLRNFTRVLLLHEYSNPHGFFLEDTHNNLILGWVR ASSDA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.33.2860219 SGRRGSRGSS0.993unspLmjF.33.2860219 SGRRGSRGSS0.993unspLmjF.33.2860219 SGRRGSRGSS0.993unspLmjF.33.2860243 SVLQNSSEDM0.993unspLmjF.33.2860366 SARRPSSGGC0.997unspLmjF.33.286029 SKPRPSPLAF0.992unspLmjF.33.286077 SNRRLSSDSM0.997unsp

LmjF.33.2860      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India