LmjF.34.1060 | mitochondrial ATP-dependent zinc metallopeptidase, putative

UniProt_ID: Q4Q399

Computed_GO_Component_IDs: GO:0016020
Computed_GO_Components: membrane
Computed_GO_Function_IDs: GO:0005524 GO:0004222
Computed_GO_Functions: ATP binding metalloendopeptidase activity
Computed_GO_Process_IDs: GO:0006508
Computed_GO_Processes: proteolysis
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	LmjF.34.1060	mTP	0.096880	0.000254	0.902866	CS pos: 28-29. VRF-CA. Pr: 0.4675

No Results

Fasta :-
>LmjF.34.1060 MLYRRALVLSRRSLAAYTLPACNTSVRFCASSALPPSSSSSDKTTAAAKTPSEGTQVAPA AKQGEADTAAADTVAGAGAPSRRGATSPSSDEEGVSAPAPASVSPSSTGAEASTKGLPQL HERGGTSPPEKSTPPAPGANVNDAFAKDRVVPRGFEAFYAKNIVSKMLPKRSPTDAVQRA YTMSPQERVLIAQIAARARLQRTWRHLGILSVLLSALIGYRWYTAQARLDADVSNYKAVV VDVPGHTAVYVDDNGKFIGVRNFIDFATFEKTCDPEKDVLIQFSSYYPWIPMLLLCLLPV LAVVNAGFNGSARMITMAAQAEKSRFTFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKH PERYQTLGAKLPKGVLLDGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEVYVGVGAQRV RELFREAHNCKPCVVFIDEIDAFGRKRRSDGNGSSRGTLNAFLAALDGFKDASGIMVLAA TNRADILDNALTRSGRFDRKISLEKPSYKDRVAIALVHLQPLHLDPSSSLQNYAEMVAAL TPGCSGADIFNVCNEAAIQAAREDKEYVGAPHFHLAVERVLVGLEKSAVKYTPHEKERLA YHEAGIVVLNWFQSDTDPVIKSTILPRGRHRTGVTQKLPQNIYISTQERLLQRIVGRLGG YVSEEHFFSDVSTSAAEDLQMATSMARDMVCVYGMDPVHIGHMGFELDRDDTLQKPFGPE KENAVDIAVETIVQSCLKRARALMLEHLNHTCIIAGLLLKQETLNAHEMWFALGDRPVMT KEFRTYLES
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/325 Sequence name : 325 Sequence length : 789 VALUES OF COMPUTED PARAMETERS Coef20 : 5.124 CoefTot : 2.166 ChDiff : 3 ZoneTo : 41 KR : 5 DE : 0 CleavSite : 29 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.118 2.424 0.403 0.825 MesoH : -0.259 0.599 -0.278 0.310 MuHd_075 : 28.028 12.443 6.034 5.832 MuHd_095 : 33.728 18.589 10.379 6.422 MuHd_100 : 31.839 18.726 9.756 6.199 MuHd_105 : 27.845 17.755 8.346 5.925 Hmax_075 : 13.900 12.400 3.212 4.380 Hmax_095 : 10.100 20.400 5.763 3.684 Hmax_100 : 13.900 13.300 5.021 3.340 Hmax_105 : 9.300 13.100 3.720 3.340 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2004 0.7996 DFMC : 0.0963 0.9037 This protein is probably imported in chloroplast. f(Ser) = 0.2439 f(Arg) = 0.1220 CMi = 1.01317 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 789 LmjF.34.1060 MLYRRALVLSRRSLAAYTLPACNTSVRFCASSALPPSSSSSDKTTAAAKTPSEGTQVAPAAKQGEADTAAADTVAGAGAP 80 SRRGATSPSSDEEGVSAPAPASVSPSSTGAEASTKGLPQLHERGGTSPPEKSTPPAPGANVNDAFAKDRVVPRGFEAFYA 160 KNIVSKMLPKRSPTDAVQRAYTMSPQERVLIAQIAARARLQRTWRHLGILSVLLSALIGYRWYTAQARLDADVSNYKAVV 240 VDVPGHTAVYVDDNGKFIGVRNFIDFATFEKTCDPEKDVLIQFSSYYPWIPMLLLCLLPVLAVVNAGFNGSARMITMAAQ 320 AEKSRFTFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKHPERYQTLGAKLPKGVLLDGPPGVGKTLLAKAVAGEAMVPF 400 VSCSGSEFEEVYVGVGAQRVRELFREAHNCKPCVVFIDEIDAFGRKRRSDGNGSSRGTLNAFLAALDGFKDASGIMVLAA 480 TNRADILDNALTRSGRFDRKISLEKPSYKDRVAIALVHLQPLHLDPSSSLQNYAEMVAALTPGCSGADIFNVCNEAAIQA 560 AREDKEYVGAPHFHLAVERVLVGLEKSAVKYTPHEKERLAYHEAGIVVLNWFQSDTDPVIKSTILPRGRHRTGVTQKLPQ 640 NIYISTQERLLQRIVGRLGGYVSEEHFFSDVSTSAAEDLQMATSMARDMVCVYGMDPVHIGHMGFELDRDDTLQKPFGPE 720 KENAVDIAVETIVQSCLKRARALMLEHLNHTCIIAGLLLKQETLNAHEMWFALGDRPVMTKEFRTYLES 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...............................................P................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ..................................................................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.34.1060 4 ---MLYR|RA 0.072 . LmjF.34.1060 5 --MLYRR|AL 0.122 . LmjF.34.1060 11 RALVLSR|RS 0.070 . LmjF.34.1060 12 ALVLSRR|SL 0.194 . LmjF.34.1060 27 ACNTSVR|FC 0.086 . LmjF.34.1060 43 SSSSSDK|TT 0.084 . LmjF.34.1060 49 KTTAAAK|TP 0.064 . LmjF.34.1060 62 QVAPAAK|QG 0.068 . LmjF.34.1060 82 GAGAPSR|RG 0.079 . LmjF.34.1060 83 AGAPSRR|GA 0.187 . LmjF.34.1060 115 GAEASTK|GL 0.067 . LmjF.34.1060 123 LPQLHER|GG 0.084 . LmjF.34.1060 131 GTSPPEK|ST 0.107 . LmjF.34.1060 147 VNDAFAK|DR 0.067 . LmjF.34.1060 149 DAFAKDR|VV 0.129 . LmjF.34.1060 153 KDRVVPR|GF 0.144 . LmjF.34.1060 161 FEAFYAK|NI 0.063 . LmjF.34.1060 166 AKNIVSK|ML 0.074 . LmjF.34.1060 170 VSKMLPK|RS 0.059 . LmjF.34.1060 171 SKMLPKR|SP 0.350 . LmjF.34.1060 179 PTDAVQR|AY 0.087 . LmjF.34.1060 188 TMSPQER|VL 0.151 . LmjF.34.1060 197 IAQIAAR|AR 0.082 . LmjF.34.1060 199 QIAARAR|LQ 0.095 . LmjF.34.1060 202 ARARLQR|TW 0.355 . LmjF.34.1060 205 RLQRTWR|HL 0.336 . LmjF.34.1060 221 SALIGYR|WY 0.083 . LmjF.34.1060 228 WYTAQAR|LD 0.076 . LmjF.34.1060 237 ADVSNYK|AV 0.069 . LmjF.34.1060 256 YVDDNGK|FI 0.066 . LmjF.34.1060 261 GKFIGVR|NF 0.081 . LmjF.34.1060 271 DFATFEK|TC 0.063 . LmjF.34.1060 277 KTCDPEK|DV 0.086 . LmjF.34.1060 313 GFNGSAR|MI 0.136 . LmjF.34.1060 323 MAAQAEK|SR 0.082 . LmjF.34.1060 325 AQAEKSR|FT 0.148 . LmjF.34.1060 329 KSRFTFK|RE 0.065 . LmjF.34.1060 330 SRFTFKR|EM 0.339 . LmjF.34.1060 337 EMSVSTR|LK 0.123 . LmjF.34.1060 339 SVSTRLK|DV 0.104 . LmjF.34.1060 348 AGLTEAK|HE 0.058 . LmjF.34.1060 359 EVIDFLK|HP 0.062 . LmjF.34.1060 363 FLKHPER|YQ 0.087 . LmjF.34.1060 370 YQTLGAK|LP 0.059 . LmjF.34.1060 373 LGAKLPK|GV 0.079 . LmjF.34.1060 385 GPPGVGK|TL 0.064 . LmjF.34.1060 390 GKTLLAK|AV 0.078 . LmjF.34.1060 419 VGVGAQR|VR 0.070 . LmjF.34.1060 421 VGAQRVR|EL 0.093 . LmjF.34.1060 425 RVRELFR|EA 0.115 . LmjF.34.1060 431 REAHNCK|PC 0.065 . LmjF.34.1060 445 EIDAFGR|KR 0.077 . LmjF.34.1060 446 IDAFGRK|RR 0.084 . LmjF.34.1060 447 DAFGRKR|RS 0.171 . LmjF.34.1060 448 AFGRKRR|SD 0.765 *ProP* LmjF.34.1060 456 DGNGSSR|GT 0.098 . LmjF.34.1060 470 AALDGFK|DA 0.076 . LmjF.34.1060 483 VLAATNR|AD 0.074 . LmjF.34.1060 493 LDNALTR|SG 0.107 . LmjF.34.1060 496 ALTRSGR|FD 0.246 . LmjF.34.1060 499 RSGRFDR|KI 0.358 . LmjF.34.1060 500 SGRFDRK|IS 0.077 . LmjF.34.1060 505 RKISLEK|PS 0.062 . LmjF.34.1060 509 LEKPSYK|DR 0.072 . LmjF.34.1060 511 KPSYKDR|VA 0.165 . LmjF.34.1060 562 AAIQAAR|ED 0.085 . LmjF.34.1060 565 QAAREDK|EY 0.147 . LmjF.34.1060 579 FHLAVER|VL 0.085 . LmjF.34.1060 586 VLVGLEK|SA 0.088 . LmjF.34.1060 590 LEKSAVK|YT 0.064 . LmjF.34.1060 596 KYTPHEK|ER 0.054 . LmjF.34.1060 598 TPHEKER|LA 0.147 . LmjF.34.1060 621 DTDPVIK|ST 0.068 . LmjF.34.1060 627 KSTILPR|GR 0.099 . LmjF.34.1060 629 TILPRGR|HR 0.081 . LmjF.34.1060 631 LPRGRHR|TG 0.086 . LmjF.34.1060 637 RTGVTQK|LP 0.062 . LmjF.34.1060 649 YISTQER|LL 0.096 . LmjF.34.1060 653 QERLLQR|IV 0.137 . LmjF.34.1060 657 LQRIVGR|LG 0.104 . LmjF.34.1060 687 MATSMAR|DM 0.096 . LmjF.34.1060 709 MGFELDR|DD 0.083 . LmjF.34.1060 715 RDDTLQK|PF 0.068 . LmjF.34.1060 721 KPFGPEK|EN 0.062 . LmjF.34.1060 738 IVQSCLK|RA 0.065 . LmjF.34.1060 739 VQSCLKR|AR 0.170 . LmjF.34.1060 741 SCLKRAR|AL 0.092 . LmjF.34.1060 760 IAGLLLK|QE 0.055 . LmjF.34.1060 776 WFALGDR|PV 0.133 . LmjF.34.1060 781 DRPVMTK|EF 0.071 . LmjF.34.1060 784 VMTKEFR|TY 0.078 . ____________________________^_________________

Fasta :-
>LmjF.34.1060 ATGCTCTACAGACGAGCGCTCGTGCTGTCGAGGCGGTCGCTGGCGGCGTACACTTTGCCT GCCTGCAACACTAGCGTGCGCTTCTGCGCTTCCTCCGCACTGCCGCCCTCGTCGTCATCA TCTGACAAAACGACAGCGGCGGCGAAGACACCTTCTGAGGGAACGCAGGTCGCGCCGGCA GCGAAGCAGGGTGAGGCGGACACCGCAGCTGCGGATACGGTGGCCGGCGCCGGCGCCCCA AGCAGGCGAGGAGCCACTTCGCCATCATCTGACGAGGAGGGAGTCTCTGCGCCTGCGCCG GCTTCGGTGTCTCCGTCGAGCACTGGTGCCGAGGCTAGCACAAAGGGGTTGCCGCAGCTG CACGAAAGAGGAGGGACTTCACCGCCGGAGAAGTCGACGCCACCAGCACCGGGGGCAAAT GTTAATGACGCCTTCGCCAAAGATCGCGTCGTGCCGCGCGGGTTCGAGGCGTTTTACGCG AAGAACATCGTGTCGAAGATGCTGCCGAAGCGCAGCCCGACTGATGCGGTGCAGCGCGCC TATACAATGTCGCCGCAGGAGCGCGTTCTGATTGCGCAGATCGCGGCACGGGCACGGCTG CAGCGGACGTGGCGCCACCTTGGCATCCTCTCCGTGTTGCTCTCCGCACTTATTGGCTAC CGGTGGTACACGGCGCAGGCGCGGCTTGACGCTGACGTGTCGAACTACAAGGCGGTTGTC GTGGACGTGCCCGGCCACACCGCCGTCTACGTGGACGACAACGGCAAGTTCATCGGCGTG CGCAACTTCATCGACTTTGCCACGTTCGAGAAGACCTGCGACCCGGAAAAGGATGTGCTG ATCCAGTTTAGCTCCTACTACCCATGGATCCCGATGCTGCTGCTATGTCTACTGCCGGTG CTGGCTGTTGTGAACGCCGGCTTCAACGGGTCGGCGCGCATGATCACGATGGCGGCGCAG GCGGAGAAGAGTCGGTTTACGTTCAAGCGAGAGATGTCGGTAAGTACGCGGCTGAAGGAC GTCGCGGGGCTGACGGAGGCAAAGCATGAGGTGGTGGAGGTGATTGACTTCCTTAAGCAC CCGGAGCGTTACCAGACGCTTGGTGCGAAGCTGCCCAAGGGCGTGCTGCTCGACGGCCCG CCTGGTGTCGGCAAGACGCTGCTGGCCAAGGCGGTGGCTGGTGAGGCCATGGTGCCGTTT GTCAGCTGCTCGGGCAGCGAGTTCGAGGAGGTGTACGTCGGCGTCGGCGCGCAGCGCGTG CGTGAGCTGTTTCGTGAGGCGCATAACTGCAAGCCGTGTGTCGTGTTCATAGACGAGATC GACGCGTTTGGCCGCAAGCGCCGATCAGATGGCAACGGCAGCTCGCGAGGCACCTTGAAC GCCTTCCTCGCGGCGCTTGACGGGTTCAAGGATGCGTCTGGCATCATGGTGCTGGCGGCC ACGAACCGCGCCGACATCCTAGACAACGCGCTGACTCGCTCCGGCCGCTTCGATCGCAAG ATCTCGCTTGAGAAGCCGTCCTACAAGGATCGTGTGGCGATTGCCCTGGTGCATCTGCAG CCGCTCCACCTTGACCCGTCGTCCTCGCTGCAGAACTACGCCGAGATGGTAGCGGCGCTG ACACCTGGCTGCAGCGGGGCAGACATCTTCAACGTGTGCAACGAGGCGGCTATCCAGGCG GCGCGTGAGGACAAGGAGTATGTCGGGGCGCCGCACTTCCACCTGGCTGTCGAGCGGGTG CTCGTCGGTCTTGAAAAGAGCGCTGTCAAGTACACACCACACGAGAAAGAGCGACTGGCG TACCACGAGGCGGGGATCGTGGTGCTGAACTGGTTCCAGAGCGACACGGATCCGGTCATC AAGTCCACTATCCTGCCGCGCGGCCGCCACCGCACGGGCGTGACGCAGAAGCTGCCGCAG AACATCTACATTTCGACGCAGGAGCGACTGCTGCAGCGTATTGTGGGCCGGCTGGGCGGC TACGTGTCAGAGGAGCACTTCTTCAGCGATGTGTCAACGAGTGCGGCCGAAGATTTACAG ATGGCGACGAGCATGGCACGCGACATGGTGTGCGTGTATGGCATGGACCCGGTGCACATT GGGCACATGGGGTTCGAGCTCGACCGCGACGACACGCTGCAGAAACCGTTTGGCCCCGAG AAAGAGAACGCGGTCGACATTGCCGTGGAGACGATTGTGCAGTCGTGCCTAAAGCGGGCG CGAGCTCTGATGCTGGAGCACCTGAATCACACCTGCATCATTGCTGGGCTGCTGCTGAAG CAGGAGACGCTGAACGCACATGAAATGTGGTTCGCACTGGGCGACCGCCCTGTCATGACG AAGGAGTTCCGGACCTACCTGGAAAGCTAA
Download Fasta

Fasta :-

MLYRRALVLSRRSLAAYTLPACNTSVRFCASSALPPSSSSSDKTTAAAKTPSEGTQVAPA AKQGEADTAAADTVAGAGAPSRRGATSPSSDEEGVSAPAPASVSPSSTGAEASTKGLPQL HERGGTSPPEKSTPPAPGANVNDAFAKDRVVPRGFEAFYAKNIVSKMLPKRSPTDAVQRA YTMSPQERVLIAQIAARARLQRTWRHLGILSVLLSALIGYRWYTAQARLDADVSNYKAVV VDVPGHTAVYVDDNGKFIGVRNFIDFATFEKTCDPEKDVLIQFSSYYPWIPMLLLCLLPV LAVVNAGFNGSARMITMAAQAEKSRFTFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKH PERYQTLGAKLPKGVLLDGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEVYVGVGAQRV RELFREAHNCKPCVVFIDEIDAFGRKRRSDGNGSSRGTLNAFLAALDGFKDASGIMVLAA TNRADILDNALTRSGRFDRKISLEKPSYKDRVAIALVHLQPLHLDPSSSLQNYAEMVAAL TPGCSGADIFNVCNEAAIQAAREDKEYVGAPHFHLAVERVLVGLEKSAVKYTPHEKERLA YHEAGIVVLNWFQSDTDPVIKSTILPRGRHRTGVTQKLPQNIYISTQERLLQRIVGRLGG YVSEEHFFSDVSTSAAEDLQMATSMARDMVCVYGMDPVHIGHMGFELDRDDTLQKPFGPE KENAVDIAVETIVQSCLKRARALMLEHLNHTCIIAGLLLKQETLNAHEMWFALGDRPVMT KEFRTYLES

Extended AAA-ATPase domain

title: ATP binding site
coordinates: P380,P381,G382,V383,G384,K385,T386,L387,D438,N482

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	LmjF.34.1060	90 S	TSPSSDEEG	0.998	unsp	LmjF.34.1060	90 S	TSPSSDEEG	0.998	unsp	LmjF.34.1060	90 S	TSPSSDEEG	0.998	unsp	LmjF.34.1060	172 S	LPKRSPTDA	0.997	unsp	LmjF.34.1060	449 S	RKRRSDGNG	0.997	unsp	LmjF.34.1060	502 S	DRKISLEKP	0.993	unsp	LmjF.34.1060	507 S	LEKPSYKDR	0.997	unsp	LmjF.34.1060	41 S	SSSSSDKTT	0.995	unsp	LmjF.34.1060	87 S	RGATSPSSD	0.997	unsp

LmjF.34.1060 | mitochondrial ATP-dependent zinc metallopeptidase, putative

ID's

UniProt_ID: Q4Q399

GEO Functions

Computed_GO_Component_IDs: GO:0016020

Computed_GO_Components: membrane

Computed_GO_Function_IDs: GO:0005524 GO:0004222

Computed_GO_Functions: ATP binding metalloendopeptidase activity

Computed_GO_Process_IDs: GO:0006508

Computed_GO_Processes: proteolysis

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Extended AAA-ATPase domain

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

LmjF.34.1060

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India