LmjF.34.4000 | Peptidase family C78, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005634      

  • Curated_GO_Components:  nucleus      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.34.4000OTHER0.9996230.0000530.000324
No Results

  • Fasta :-

    >LmjF.34.4000 MEDVITRIADTASYPLHVLQRNKKTIGIVGADALAALPMAGGSCTHRLVISATELKPFLI DSPAAEVLFKWCARVSCSLSRTLKRHCLVVKNVLRGVAISALLEEDHSDASTVETVWADV ERSAELWKTPFTGGSTETLHVYMMSVPEVADDISKTLHDMPGASAAAPECSLATTRVLLG DSASEMVAAIRQLFNQFLGTEAESLTGTEVCWPASMLFPVNVHTRDDARRRAEHAALRLP YQGLLRHEDAIQAWSTWDDLRRQHEANDASIFRTGAAWERHLATSPHRDLAPGSAPSLPG AETLLVSGAYDYYHYRVDGFRDDGWGCAYRSLQTVLSWFQHAGLVRSAIPSIRRIQEMLY QVDPDKASKRDFVGSREWIGSFEIMLVLQQYLPGLECIIKRLERGQDLDTNASVQSLLME HFRSPLAAPVMIGGSSYAHTILGVHVNVHTMEAQYLILDPHYSAYPTQIKTAIKKGYVGW KEASKFFETGSWYNLCIPRVDLFDPR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/167 Sequence name : 167 Sequence length : 506 VALUES OF COMPUTED PARAMETERS Coef20 : 3.830 CoefTot : 0.000 ChDiff : -9 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.359 1.735 0.225 0.646 MesoH : -0.177 0.695 -0.212 0.242 MuHd_075 : 21.496 13.789 6.855 4.962 MuHd_095 : 39.965 26.997 10.347 7.745 MuHd_100 : 40.780 28.116 11.023 8.257 MuHd_105 : 36.258 25.101 9.774 7.946 Hmax_075 : 11.433 14.700 2.538 5.017 Hmax_095 : 18.200 22.500 3.956 6.880 Hmax_100 : 16.400 19.100 3.238 6.380 Hmax_105 : 4.400 11.300 0.206 4.520 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7188 0.2812 DFMC : 0.8707 0.1293
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 506 LmjF.34.4000 MEDVITRIADTASYPLHVLQRNKKTIGIVGADALAALPMAGGSCTHRLVISATELKPFLIDSPAAEVLFKWCARVSCSLS 80 RTLKRHCLVVKNVLRGVAISALLEEDHSDASTVETVWADVERSAELWKTPFTGGSTETLHVYMMSVPEVADDISKTLHDM 160 PGASAAAPECSLATTRVLLGDSASEMVAAIRQLFNQFLGTEAESLTGTEVCWPASMLFPVNVHTRDDARRRAEHAALRLP 240 YQGLLRHEDAIQAWSTWDDLRRQHEANDASIFRTGAAWERHLATSPHRDLAPGSAPSLPGAETLLVSGAYDYYHYRVDGF 320 RDDGWGCAYRSLQTVLSWFQHAGLVRSAIPSIRRIQEMLYQVDPDKASKRDFVGSREWIGSFEIMLVLQQYLPGLECIIK 400 RLERGQDLDTNASVQSLLMEHFRSPLAAPVMIGGSSYAHTILGVHVNVHTMEAQYLILDPHYSAYPTQIKTAIKKGYVGW 480 KEASKFFETGSWYNLCIPRVDLFDPR 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.34.4000 7 MEDVITR|IA 0.093 . LmjF.34.4000 21 PLHVLQR|NK 0.099 . LmjF.34.4000 23 HVLQRNK|KT 0.065 . LmjF.34.4000 24 VLQRNKK|TI 0.437 . LmjF.34.4000 47 GGSCTHR|LV 0.126 . LmjF.34.4000 56 ISATELK|PF 0.057 . LmjF.34.4000 70 AAEVLFK|WC 0.064 . LmjF.34.4000 74 LFKWCAR|VS 0.084 . LmjF.34.4000 81 VSCSLSR|TL 0.077 . LmjF.34.4000 84 SLSRTLK|RH 0.122 . LmjF.34.4000 85 LSRTLKR|HC 0.181 . LmjF.34.4000 91 RHCLVVK|NV 0.077 . LmjF.34.4000 95 VVKNVLR|GV 0.110 . LmjF.34.4000 122 VWADVER|SA 0.171 . LmjF.34.4000 128 RSAELWK|TP 0.076 . LmjF.34.4000 155 VADDISK|TL 0.062 . LmjF.34.4000 176 CSLATTR|VL 0.069 . LmjF.34.4000 191 EMVAAIR|QL 0.092 . LmjF.34.4000 225 PVNVHTR|DD 0.111 . LmjF.34.4000 229 HTRDDAR|RR 0.072 . LmjF.34.4000 230 TRDDARR|RA 0.201 . LmjF.34.4000 231 RDDARRR|AE 0.170 . LmjF.34.4000 238 AEHAALR|LP 0.085 . LmjF.34.4000 246 PYQGLLR|HE 0.092 . LmjF.34.4000 261 STWDDLR|RQ 0.085 . LmjF.34.4000 262 TWDDLRR|QH 0.153 . LmjF.34.4000 273 NDASIFR|TG 0.094 . LmjF.34.4000 280 TGAAWER|HL 0.102 . LmjF.34.4000 288 LATSPHR|DL 0.098 . LmjF.34.4000 316 YDYYHYR|VD 0.088 . LmjF.34.4000 321 YRVDGFR|DD 0.130 . LmjF.34.4000 330 GWGCAYR|SL 0.195 . LmjF.34.4000 346 QHAGLVR|SA 0.192 . LmjF.34.4000 353 SAIPSIR|RI 0.108 . LmjF.34.4000 354 AIPSIRR|IQ 0.090 . LmjF.34.4000 366 YQVDPDK|AS 0.060 . LmjF.34.4000 369 DPDKASK|RD 0.059 . LmjF.34.4000 370 PDKASKR|DF 0.314 . LmjF.34.4000 376 RDFVGSR|EW 0.100 . LmjF.34.4000 400 GLECIIK|RL 0.068 . LmjF.34.4000 401 LECIIKR|LE 0.138 . LmjF.34.4000 404 IIKRLER|GQ 0.191 . LmjF.34.4000 423 LLMEHFR|SP 0.147 . LmjF.34.4000 470 AYPTQIK|TA 0.065 . LmjF.34.4000 474 QIKTAIK|KG 0.060 . LmjF.34.4000 475 IKTAIKK|GY 0.095 . LmjF.34.4000 481 KGYVGWK|EA 0.090 . LmjF.34.4000 485 GWKEASK|FF 0.075 . LmjF.34.4000 499 YNLCIPR|VD 0.064 . LmjF.34.4000 506 VDLFDPR|-- 0.083 . ____________________________^_________________

  • Fasta :-

    >LmjF.34.4000 ATGGAGGATGTCATCACCCGCATCGCCGACACGGCCTCCTATCCGCTCCATGTATTGCAA CGCAACAAGAAGACCATCGGCATCGTCGGCGCGGATGCGCTGGCTGCATTGCCCATGGCA GGTGGCAGCTGCACACATCGTCTAGTTATCTCTGCCACCGAATTGAAACCGTTCCTTATA GATTCGCCGGCAGCGGAGGTGCTGTTCAAGTGGTGCGCGCGCGTCAGCTGCTCTCTGTCC CGCACGCTGAAGCGTCACTGTCTTGTTGTGAAGAATGTGTTGCGCGGCGTCGCAATCTCT GCACTTCTCGAGGAGGACCACAGCGACGCTAGCACCGTAGAAACGGTGTGGGCGGATGTG GAGCGCAGCGCGGAGCTGTGGAAGACGCCGTTCACAGGTGGCAGCACCGAAACCCTGCAC GTGTACATGATGAGCGTGCCGGAGGTGGCAGATGACATTTCGAAAACGCTACATGATATG CCCGGCGCCTCTGCCGCAGCCCCGGAGTGCAGTCTCGCCACCACCCGCGTCCTTCTCGGG GACTCCGCTAGCGAAATGGTGGCGGCGATTCGGCAGCTTTTCAACCAGTTTCTCGGTACT GAGGCGGAGAGTCTCACTGGCACGGAGGTGTGCTGGCCTGCTTCCATGCTCTTCCCTGTG AATGTGCACACCCGCGACGACGCGAGGCGGCGGGCAGAGCACGCGGCCCTGCGGCTGCCG TATCAGGGGCTCCTGCGCCATGAGGATGCCATTCAAGCGTGGTCCACGTGGGACGACCTG CGCCGACAGCACGAGGCAAACGACGCTTCCATCTTTCGTACTGGCGCGGCCTGGGAGCGG CATCTCGCCACCAGCCCGCACCGTGACCTCGCTCCTGGATCTGCACCATCCCTTCCTGGG GCGGAGACGCTGTTGGTGAGCGGCGCCTACGATTACTATCACTACCGCGTCGACGGCTTC CGCGACGACGGCTGGGGCTGTGCGTACCGTAGCCTGCAAACGGTTCTTTCCTGGTTTCAG CATGCCGGTCTCGTACGCTCCGCTATTCCATCGATCCGGCGCATTCAGGAGATGCTCTAC CAGGTGGACCCGGACAAGGCGAGCAAGAGAGACTTCGTCGGCTCGCGTGAGTGGATCGGC AGCTTCGAGATTATGCTGGTCCTGCAGCAGTATTTGCCCGGTCTGGAGTGCATCATCAAG CGTCTGGAGAGAGGACAAGACCTGGACACGAACGCCTCGGTGCAGTCGCTGCTGATGGAG CACTTCCGCAGCCCACTAGCCGCGCCGGTGATGATAGGAGGCAGCAGCTACGCGCACACG ATCCTCGGCGTTCACGTGAACGTCCACACGATGGAGGCGCAGTACCTGATCCTCGACCCA CACTACTCCGCCTACCCAACACAAATCAAGACGGCCATCAAGAAGGGCTACGTGGGATGG AAAGAGGCCTCGAAGTTTTTTGAGACGGGTAGCTGGTACAACTTGTGCATCCCACGCGTT GACCTGTTCGATCCTCGCTGA
  • Download Fasta

  • Fasta :-

    MEDVITRIADTASYPLHVLQRNKKTIGIVGADALAALPMAGGSCTHRLVISATELKPFLI DSPAAEVLFKWCARVSCSLSRTLKRHCLVVKNVLRGVAISALLEEDHSDASTVETVWADV ERSAELWKTPFTGGSTETLHVYMMSVPEVADDISKTLHDMPGASAAAPECSLATTRVLLG DSASEMVAAIRQLFNQFLGTEAESLTGTEVCWPASMLFPVNVHTRDDARRRAEHAALRLP YQGLLRHEDAIQAWSTWDDLRRQHEANDASIFRTGAAWERHLATSPHRDLAPGSAPSLPG AETLLVSGAYDYYHYRVDGFRDDGWGCAYRSLQTVLSWFQHAGLVRSAIPSIRRIQEMLY QVDPDKASKRDFVGSREWIGSFEIMLVLQQYLPGLECIIKRLERGQDLDTNASVQSLLME HFRSPLAAPVMIGGSSYAHTILGVHVNVHTMEAQYLILDPHYSAYPTQIKTAIKKGYVGW KEASKFFETGSWYNLCIPRVDLFDPR

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.34.4000368 SPDKASKRDF0.996unspLmjF.34.4000368 SPDKASKRDF0.996unspLmjF.34.4000368 SPDKASKRDF0.996unspLmjF.34.4000111 SHSDASTVET0.996unspLmjF.34.4000285 SHLATSPHRD0.995unsp

LmjF.34.4000      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India