LmjF.34.4060 | ubiquitin hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.34.4060OTHER0.9784720.0011990.020329
No Results

  • Fasta :-

    >LmjF.34.4060 MRSGYVGIYNQGSTCYLNSVIQALYHLPAFRTQIYNLPNVEKDSVALALRDVFAQLEVRN RNTTTTELTKAFGWSAQEAAVQHDVHELMQQLFDSLETTLKETSKKNMIRDMFGGLMIYR SRAIDGAEYLSDRLEDFYDVELVVQNKANIEESLREFSSGERIEGVCVEVVPGADATPHT IERSQHFLDCPKVLLVHPNRVAFDMETYELVTLRNVWSFDFDLSLASYVVDDASLRLDKE SQEKWKRLSHRTHLGANYRLRSILTHAGDATIGHYYVYVNFDGEWVRFNDEVVESATEED VRKSAFGGQSIQSRYRLFDNERASLLIYVNDDVKDELLNETPPPSAIVEVGRCIEEERTR KEETHKVSYYLCDKSVVDVLDGVNGASDKLQRHMSVRLSPGQDEMAAIVTAAAKELHVAP EQIRIFCRDRHGLSPWCAVESMCNSYDSYYYPPIFIDIAPPLAEEDAASATTAAAAAEPF LAFLRNIESPHDRDVPVAIVRSIPELQARVPCDAVVYESRGGPQYLNAITATNQLVCGAN LLYTHQRSSNDAVRGYLQHRQLVCTKVYLYDDYTAELTELFEIHIVESTPYTTLQVGLYK MMTESKRGLPIPPSHNHLAFFKGNDRCNYAFAMPMATSLTIQWNTYNHTLRDVWGSAQHE HKIVMTILPMPLEKIDLTVLVTFNGGYNNLPHVYVPLEGGSVTFRELLELMVQQLGSRLR AGAAAGYEQQLAGQARLLRLLRVRRGELIEVVEDLDTPIDLETREDIVLDKLCPALPGYE LVNVLFCRRRSGEYYFGLPTNICINSSLDEQGDVLLRRIVKKLGYPDQEEAMKKWILCVM NVKSRKTRTASKKEVLADLVKEVGGAPFVFVVDRPQCLLLDGIEEEEHRPESIVIKSASK TDLSTT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/57 Sequence name : 57 Sequence length : 906 VALUES OF COMPUTED PARAMETERS Coef20 : 3.699 CoefTot : -1.905 ChDiff : -32 ZoneTo : 40 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.200 1.441 0.062 0.546 MesoH : -0.298 0.369 -0.338 0.247 MuHd_075 : 24.790 18.459 7.747 6.361 MuHd_095 : 23.893 23.775 9.185 6.575 MuHd_100 : 22.156 23.008 7.222 6.280 MuHd_105 : 19.159 27.030 7.880 5.980 Hmax_075 : 12.700 15.200 2.585 6.240 Hmax_095 : 12.200 13.800 3.233 5.260 Hmax_100 : 14.500 17.700 2.991 5.740 Hmax_105 : 19.600 14.700 4.123 7.620 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7417 0.2583 DFMC : 0.7326 0.2674
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 906 LmjF.34.4060 MRSGYVGIYNQGSTCYLNSVIQALYHLPAFRTQIYNLPNVEKDSVALALRDVFAQLEVRNRNTTTTELTKAFGWSAQEAA 80 VQHDVHELMQQLFDSLETTLKETSKKNMIRDMFGGLMIYRSRAIDGAEYLSDRLEDFYDVELVVQNKANIEESLREFSSG 160 ERIEGVCVEVVPGADATPHTIERSQHFLDCPKVLLVHPNRVAFDMETYELVTLRNVWSFDFDLSLASYVVDDASLRLDKE 240 SQEKWKRLSHRTHLGANYRLRSILTHAGDATIGHYYVYVNFDGEWVRFNDEVVESATEEDVRKSAFGGQSIQSRYRLFDN 320 ERASLLIYVNDDVKDELLNETPPPSAIVEVGRCIEEERTRKEETHKVSYYLCDKSVVDVLDGVNGASDKLQRHMSVRLSP 400 GQDEMAAIVTAAAKELHVAPEQIRIFCRDRHGLSPWCAVESMCNSYDSYYYPPIFIDIAPPLAEEDAASATTAAAAAEPF 480 LAFLRNIESPHDRDVPVAIVRSIPELQARVPCDAVVYESRGGPQYLNAITATNQLVCGANLLYTHQRSSNDAVRGYLQHR 560 QLVCTKVYLYDDYTAELTELFEIHIVESTPYTTLQVGLYKMMTESKRGLPIPPSHNHLAFFKGNDRCNYAFAMPMATSLT 640 IQWNTYNHTLRDVWGSAQHEHKIVMTILPMPLEKIDLTVLVTFNGGYNNLPHVYVPLEGGSVTFRELLELMVQQLGSRLR 720 AGAAAGYEQQLAGQARLLRLLRVRRGELIEVVEDLDTPIDLETREDIVLDKLCPALPGYELVNVLFCRRRSGEYYFGLPT 800 NICINSSLDEQGDVLLRRIVKKLGYPDQEEAMKKWILCVMNVKSRKTRTASKKEVLADLVKEVGGAPFVFVVDRPQCLLL 880 DGIEEEEHRPESIVIKSASKTDLSTT 960 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ...............................................P................................ 880 .......................... 960 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.34.4060 2 -----MR|SG 0.135 . LmjF.34.4060 31 YHLPAFR|TQ 0.077 . LmjF.34.4060 42 NLPNVEK|DS 0.061 . LmjF.34.4060 50 SVALALR|DV 0.193 . LmjF.34.4060 59 FAQLEVR|NR 0.069 . LmjF.34.4060 61 QLEVRNR|NT 0.101 . LmjF.34.4060 70 TTTELTK|AF 0.066 . LmjF.34.4060 101 SLETTLK|ET 0.068 . LmjF.34.4060 105 TLKETSK|KN 0.065 . LmjF.34.4060 106 LKETSKK|NM 0.101 . LmjF.34.4060 110 SKKNMIR|DM 0.173 . LmjF.34.4060 120 GGLMIYR|SR 0.091 . LmjF.34.4060 122 LMIYRSR|AI 0.120 . LmjF.34.4060 133 AEYLSDR|LE 0.071 . LmjF.34.4060 147 ELVVQNK|AN 0.062 . LmjF.34.4060 155 NIEESLR|EF 0.096 . LmjF.34.4060 162 EFSSGER|IE 0.080 . LmjF.34.4060 183 TPHTIER|SQ 0.126 . LmjF.34.4060 192 HFLDCPK|VL 0.056 . LmjF.34.4060 200 LLVHPNR|VA 0.126 . LmjF.34.4060 214 YELVTLR|NV 0.096 . LmjF.34.4060 236 VDDASLR|LD 0.068 . LmjF.34.4060 239 ASLRLDK|ES 0.102 . LmjF.34.4060 244 DKESQEK|WK 0.062 . LmjF.34.4060 246 ESQEKWK|RL 0.075 . LmjF.34.4060 247 SQEKWKR|LS 0.149 . LmjF.34.4060 251 WKRLSHR|TH 0.100 . LmjF.34.4060 259 HLGANYR|LR 0.088 . LmjF.34.4060 261 GANYRLR|SI 0.167 . LmjF.34.4060 287 FDGEWVR|FN 0.111 . LmjF.34.4060 302 ATEEDVR|KS 0.082 . LmjF.34.4060 303 TEEDVRK|SA 0.210 . LmjF.34.4060 314 GQSIQSR|YR 0.088 . LmjF.34.4060 316 SIQSRYR|LF 0.100 . LmjF.34.4060 322 RLFDNER|AS 0.069 . LmjF.34.4060 334 YVNDDVK|DE 0.058 . LmjF.34.4060 352 AIVEVGR|CI 0.124 . LmjF.34.4060 358 RCIEEER|TR 0.078 . LmjF.34.4060 360 IEEERTR|KE 0.081 . LmjF.34.4060 361 EEERTRK|EE 0.145 . LmjF.34.4060 366 RKEETHK|VS 0.059 . LmjF.34.4060 374 SYYLCDK|SV 0.105 . LmjF.34.4060 389 VNGASDK|LQ 0.059 . LmjF.34.4060 392 ASDKLQR|HM 0.092 . LmjF.34.4060 397 QRHMSVR|LS 0.128 . LmjF.34.4060 414 IVTAAAK|EL 0.070 . LmjF.34.4060 424 VAPEQIR|IF 0.081 . LmjF.34.4060 428 QIRIFCR|DR 0.120 . LmjF.34.4060 430 RIFCRDR|HG 0.067 . LmjF.34.4060 485 PFLAFLR|NI 0.070 . LmjF.34.4060 493 IESPHDR|DV 0.223 . LmjF.34.4060 501 VPVAIVR|SI 0.123 . LmjF.34.4060 509 IPELQAR|VP 0.103 . LmjF.34.4060 520 AVVYESR|GG 0.092 . LmjF.34.4060 547 LLYTHQR|SS 0.210 . LmjF.34.4060 554 SSNDAVR|GY 0.114 . LmjF.34.4060 560 RGYLQHR|QL 0.078 . LmjF.34.4060 566 RQLVCTK|VY 0.056 . LmjF.34.4060 600 LQVGLYK|MM 0.064 . LmjF.34.4060 606 KMMTESK|RG 0.061 . LmjF.34.4060 607 MMTESKR|GL 0.151 . LmjF.34.4060 622 NHLAFFK|GN 0.070 . LmjF.34.4060 626 FFKGNDR|CN 0.070 . LmjF.34.4060 651 TYNHTLR|DV 0.249 . LmjF.34.4060 662 SAQHEHK|IV 0.135 . LmjF.34.4060 674 LPMPLEK|ID 0.072 . LmjF.34.4060 705 GGSVTFR|EL 0.101 . LmjF.34.4060 718 VQQLGSR|LR 0.065 . LmjF.34.4060 720 QLGSRLR|AG 0.091 . LmjF.34.4060 736 QLAGQAR|LL 0.101 . LmjF.34.4060 739 GQARLLR|LL 0.177 . LmjF.34.4060 742 RLLRLLR|VR 0.150 . LmjF.34.4060 744 LRLLRVR|RG 0.086 . LmjF.34.4060 745 RLLRVRR|GE 0.293 . LmjF.34.4060 764 PIDLETR|ED 0.066 . LmjF.34.4060 771 EDIVLDK|LC 0.058 . LmjF.34.4060 788 VNVLFCR|RR 0.081 . LmjF.34.4060 789 NVLFCRR|RS 0.108 . LmjF.34.4060 790 VLFCRRR|SG 0.191 . LmjF.34.4060 817 QGDVLLR|RI 0.076 . LmjF.34.4060 818 GDVLLRR|IV 0.181 . LmjF.34.4060 821 LLRRIVK|KL 0.131 . LmjF.34.4060 822 LRRIVKK|LG 0.120 . LmjF.34.4060 833 DQEEAMK|KW 0.062 . LmjF.34.4060 834 QEEAMKK|WI 0.116 . LmjF.34.4060 843 LCVMNVK|SR 0.065 . LmjF.34.4060 845 VMNVKSR|KT 0.105 . LmjF.34.4060 846 MNVKSRK|TR 0.093 . LmjF.34.4060 848 VKSRKTR|TA 0.680 *ProP* LmjF.34.4060 852 KTRTASK|KE 0.055 . LmjF.34.4060 853 TRTASKK|EV 0.176 . LmjF.34.4060 861 VLADLVK|EV 0.083 . LmjF.34.4060 874 FVFVVDR|PQ 0.089 . LmjF.34.4060 889 IEEEEHR|PE 0.093 . LmjF.34.4060 896 PESIVIK|SA 0.135 . LmjF.34.4060 900 VIKSASK|TD 0.051 . ____________________________^_________________

  • Fasta :-

    >LmjF.34.4060 ATGCGCTCGGGGTACGTTGGCATCTACAATCAAGGTAGCACGTGCTACCTGAACTCGGTC ATACAGGCATTGTACCACCTACCCGCCTTCCGCACGCAAATTTATAACCTCCCGAATGTG GAAAAAGACTCCGTCGCACTCGCTCTACGCGACGTGTTTGCGCAGCTGGAGGTGCGCAAC CGCAACACCACCACAACGGAGCTGACCAAGGCTTTTGGCTGGTCGGCGCAGGAGGCGGCG GTGCAGCATGACGTTCATGAGTTGATGCAGCAGCTCTTTGACAGCCTCGAAACGACGCTG AAGGAGACGTCGAAGAAGAACATGATCCGCGACATGTTTGGCGGCTTGATGATCTACCGG TCTCGTGCCATAGACGGCGCCGAATACCTCTCTGACCGCCTCGAGGACTTCTACGACGTG GAGCTGGTAGTGCAGAACAAAGCAAACATCGAGGAGTCGCTGCGGGAGTTCTCATCCGGA GAGCGGATCGAGGGTGTCTGTGTGGAGGTGGTGCCTGGCGCGGACGCGACGCCACACACG ATCGAGCGCAGCCAGCACTTTCTCGACTGCCCCAAGGTGCTCTTGGTGCACCCGAACCGC GTGGCGTTTGACATGGAAACATACGAGCTGGTGACGCTGCGCAACGTGTGGAGCTTCGAT TTCGACTTGTCACTGGCGAGCTACGTTGTCGATGACGCCTCGCTGAGGCTCGACAAGGAG AGTCAGGAAAAATGGAAGAGGCTTAGTCACCGCACCCACCTCGGCGCGAACTACAGACTG CGCTCCATCCTCACGCACGCCGGCGATGCCACCATCGGGCACTACTATGTGTACGTCAAC TTCGATGGGGAGTGGGTGCGCTTCAACGACGAGGTGGTCGAGTCGGCAACGGAGGAGGAT GTGCGCAAGTCCGCGTTTGGTGGACAGTCGATTCAGTCGCGCTACCGCCTCTTCGACAAC GAGCGCGCGTCGCTGCTGATCTACGTGAACGATGATGTCAAGGATGAGCTGCTGAACGAG ACGCCGCCACCGAGCGCGATCGTCGAGGTGGGCCGCTGCATTGAGGAGGAGCGCACTAGG AAGGAGGAGACGCACAAGGTGAGCTACTACCTATGCGACAAGTCTGTAGTGGACGTGCTC GACGGCGTGAACGGCGCCTCCGACAAGCTGCAGCGTCACATGTCCGTGCGCCTGTCTCCC GGTCAAGATGAGATGGCCGCCATCGTCACTGCCGCAGCGAAGGAGCTGCACGTAGCGCCA GAGCAGATTCGCATCTTCTGCCGCGACCGTCACGGCCTCTCCCCATGGTGCGCCGTTGAG TCGATGTGCAACTCGTACGACTCATACTATTACCCACCCATTTTTATTGATATCGCGCCG CCGCTCGCGGAGGAAGATGCGGCGTCCGCCACAACTGCCGCTGCCGCCGCCGAGCCGTTC CTCGCGTTCCTCCGTAATATCGAATCGCCGCACGACCGCGACGTCCCTGTCGCGATCGTC CGCTCGATCCCCGAGCTGCAGGCGCGAGTGCCGTGCGATGCGGTTGTGTACGAAAGCCGC GGCGGCCCGCAGTACTTGAACGCCATCACCGCGACGAACCAACTTGTGTGTGGCGCAAAC TTACTTTATACGCACCAGCGCTCCTCCAACGACGCGGTGCGAGGGTACCTTCAGCACCGC CAGCTCGTCTGCACTAAGGTCTACCTGTACGACGACTACACCGCCGAGCTGACGGAGCTC TTTGAAATACATATTGTTGAATCCACACCCTACACCACGCTGCAGGTCGGGCTGTACAAG ATGATGACAGAGTCGAAGAGGGGTCTGCCAATCCCTCCTTCCCACAACCACCTCGCGTTC TTCAAGGGGAATGACCGATGCAACTACGCCTTCGCGATGCCCATGGCGACGTCGCTCACA ATTCAGTGGAACACGTACAACCACACCCTGCGAGACGTGTGGGGTAGCGCGCAGCACGAG CACAAAATTGTCATGACAATTCTTCCAATGCCGCTCGAAAAGATCGACTTGACGGTGCTG GTGACGTTCAACGGCGGATACAATAACTTGCCGCACGTCTACGTCCCACTGGAGGGCGGC AGCGTTACGTTTCGCGAACTTCTTGAACTGATGGTGCAGCAGCTGGGCAGTCGTCTCCGT GCAGGCGCCGCCGCGGGGTACGAGCAGCAGCTTGCCGGGCAGGCACGGCTGCTGCGGCTG CTGCGGGTGCGAAGAGGTGAGCTGATTGAAGTGGTGGAGGACCTGGACACTCCGATTGAC CTCGAGACACGCGAGGACATTGTTCTGGACAAGCTGTGCCCGGCACTGCCCGGGTACGAG CTCGTCAACGTGCTCTTCTGCCGCCGCCGCTCAGGAGAGTACTACTTTGGTCTACCGACG AACATCTGCATCAACTCGTCTCTCGATGAGCAGGGCGATGTGCTCCTTCGCCGCATTGTA AAGAAGCTGGGGTACCCTGATCAGGAGGAGGCAATGAAAAAGTGGATACTTTGTGTAATG AACGTCAAGTCGCGCAAGACGCGCACTGCCAGCAAGAAGGAGGTGCTGGCAGATCTCGTC AAGGAGGTTGGCGGCGCACCGTTTGTGTTCGTTGTCGACCGTCCCCAGTGCTTGCTGCTC GACGGTATTGAGGAGGAGGAGCACCGGCCAGAATCCATCGTTATCAAGTCGGCCTCTAAG ACAGACCTCTCCACGACTTAG
  • Download Fasta

  • Fasta :-

    MRSGYVGIYNQGSTCYLNSVIQALYHLPAFRTQIYNLPNVEKDSVALALRDVFAQLEVRN RNTTTTELTKAFGWSAQEAAVQHDVHELMQQLFDSLETTLKETSKKNMIRDMFGGLMIYR SRAIDGAEYLSDRLEDFYDVELVVQNKANIEESLREFSSGERIEGVCVEVVPGADATPHT IERSQHFLDCPKVLLVHPNRVAFDMETYELVTLRNVWSFDFDLSLASYVVDDASLRLDKE SQEKWKRLSHRTHLGANYRLRSILTHAGDATIGHYYVYVNFDGEWVRFNDEVVESATEED VRKSAFGGQSIQSRYRLFDNERASLLIYVNDDVKDELLNETPPPSAIVEVGRCIEEERTR KEETHKVSYYLCDKSVVDVLDGVNGASDKLQRHMSVRLSPGQDEMAAIVTAAAKELHVAP EQIRIFCRDRHGLSPWCAVESMCNSYDSYYYPPIFIDIAPPLAEEDAASATTAAAAAEPF LAFLRNIESPHDRDVPVAIVRSIPELQARVPCDAVVYESRGGPQYLNAITATNQLVCGAN LLYTHQRSSNDAVRGYLQHRQLVCTKVYLYDDYTAELTELFEIHIVESTPYTTLQVGLYK MMTESKRGLPIPPSHNHLAFFKGNDRCNYAFAMPMATSLTIQWNTYNHTLRDVWGSAQHE HKIVMTILPMPLEKIDLTVLVTFNGGYNNLPHVYVPLEGGSVTFRELLELMVQQLGSRLR AGAAAGYEQQLAGQARLLRLLRVRRGELIEVVEDLDTPIDLETREDIVLDKLCPALPGYE LVNVLFCRRRSGEYYFGLPTNICINSSLDEQGDVLLRRIVKKLGYPDQEEAMKKWILCVM NVKSRKTRTASKKEVLADLVKEVGGAPFVFVVDRPQCLLLDGIEEEEHRPESIVIKSASK TDLSTT

  • title: Active Site
  • coordinates: N10,C15,H274,D290
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.34.4060241 SLDKESQEKW0.993unspLmjF.34.4060241 SLDKESQEKW0.993unspLmjF.34.4060241 SLDKESQEKW0.993unspLmjF.34.4060249 SWKRLSHRTH0.993unspLmjF.34.4060295 SEVVESATEE0.992unspLmjF.34.4060399 SSVRLSPGQD0.997unspLmjF.34.4060791 SCRRRSGEYY0.997unspLmjF.34.4060851 STRTASKKEV0.997unspLmjF.34.4060899 SIKSASKTDL0.99unspLmjF.34.406099 TSLETTLKET0.991unspLmjF.34.4060104 SLKETSKKNM0.994unsp

LmjF.34.4060      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India