LmjF.35.1390 | Zn-finger in Ran binding protein and others/OTU-like cysteine protease, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0051286      

  • Curated_GO_Components:  cell tip      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.35.1390OTHER0.9999920.0000010.000008
No Results

  • Fasta :-

    >LmjF.35.1390 MEYVDNLLNKKIERERLGAGGADVSSSSAASAAGTSSKHDDGHGTTGDRQLKSAALRLCW LCNRASPLRFRLQGGIHLCFTCFRASYLSLLLPIINTPARRASDARFLKLIGSIENERGG SVSSPTAELLTSMYGEVIEPQQASFVMSSAMMRLRREEEEQRLLSATRRSHSGGAASLTK SVKSFWNCPLCTFLNAAAARECEACGFVNPGEVTCPVCKARCSLGIIGAPSAEENPASRC KTGEPHCIWNCRECGGLNTLDGDRCTSCRQPRYWACSQCTALHHMARGEDGLRYCPTCGA YNTPNDILVGQAKIDKETRNAGMVTAQQSAVQRRKGGSKDRDHNCGDSRAAAGGAAMAKP DDQILFGVNDAHTLEELERQKQIENNEKRLLSRLNRLHISRNLQKTDGNCLFRALANQLF GQPRLHYLVRSLATAYMSEHSEDYAILFDGTAEWKKYLTAMKEQGTWGDELCLNAAARCF RVNIHVITSDQERWHIVFQHDQLGRTRTARSDEAARTNDVAQTLTSYEGVSLFLAYLSPV HYDDITPLPVAHLQLGELLSGELNKRMKRNQTTHSPSDSGSSTSALVSAGPSTGGRWADA SNFSHLPSRPLPVDPAKSHTRSSDDLVKSCLESPTVSNAAVPPVPRSRPHSCKSVTYKSS EPPSRPPPTSPTSLPSEYTC
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/371 Sequence name : 371 Sequence length : 680 VALUES OF COMPUTED PARAMETERS Coef20 : 3.371 CoefTot : 0.000 ChDiff : 10 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.153 1.582 0.309 0.486 MesoH : -0.369 0.342 -0.209 0.165 MuHd_075 : 36.067 23.259 10.862 8.634 MuHd_095 : 25.438 19.829 8.060 5.128 MuHd_100 : 25.259 17.785 7.275 5.000 MuHd_105 : 23.862 17.892 6.466 4.726 Hmax_075 : 3.600 11.100 0.270 4.700 Hmax_095 : -6.400 7.600 -2.886 2.720 Hmax_100 : -4.100 6.600 -2.827 2.480 Hmax_105 : -8.500 4.900 -3.482 0.420 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9398 0.0602 DFMC : 0.9664 0.0336
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 680 LmjF.35.1390 MEYVDNLLNKKIERERLGAGGADVSSSSAASAAGTSSKHDDGHGTTGDRQLKSAALRLCWLCNRASPLRFRLQGGIHLCF 80 TCFRASYLSLLLPIINTPARRASDARFLKLIGSIENERGGSVSSPTAELLTSMYGEVIEPQQASFVMSSAMMRLRREEEE 160 QRLLSATRRSHSGGAASLTKSVKSFWNCPLCTFLNAAAARECEACGFVNPGEVTCPVCKARCSLGIIGAPSAEENPASRC 240 KTGEPHCIWNCRECGGLNTLDGDRCTSCRQPRYWACSQCTALHHMARGEDGLRYCPTCGAYNTPNDILVGQAKIDKETRN 320 AGMVTAQQSAVQRRKGGSKDRDHNCGDSRAAAGGAAMAKPDDQILFGVNDAHTLEELERQKQIENNEKRLLSRLNRLHIS 400 RNLQKTDGNCLFRALANQLFGQPRLHYLVRSLATAYMSEHSEDYAILFDGTAEWKKYLTAMKEQGTWGDELCLNAAARCF 480 RVNIHVITSDQERWHIVFQHDQLGRTRTARSDEAARTNDVAQTLTSYEGVSLFLAYLSPVHYDDITPLPVAHLQLGELLS 560 GELNKRMKRNQTTHSPSDSGSSTSALVSAGPSTGGRWADASNFSHLPSRPLPVDPAKSHTRSSDDLVKSCLESPTVSNAA 640 VPPVPRSRPHSCKSVTYKSSEPPSRPPPTSPTSLPSEYTC 720 ................................................................................ 80 ...........................................................................P.... 160 ................................................................................ 240 ...............................P................................................ 320 ................................................................................ 400 ................................................................................ 480 .............................P.................................................. 560 ................................................................................ 640 ........................................ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 3 Name Pos Context Score Pred ____________________________v_________________ LmjF.35.1390 10 VDNLLNK|KI 0.079 . LmjF.35.1390 11 DNLLNKK|IE 0.072 . LmjF.35.1390 14 LNKKIER|ER 0.086 . LmjF.35.1390 16 KKIERER|LG 0.080 . LmjF.35.1390 38 AAGTSSK|HD 0.081 . LmjF.35.1390 49 HGTTGDR|QL 0.068 . LmjF.35.1390 52 TGDRQLK|SA 0.184 . LmjF.35.1390 57 LKSAALR|LC 0.091 . LmjF.35.1390 64 LCWLCNR|AS 0.065 . LmjF.35.1390 69 NRASPLR|FR 0.110 . LmjF.35.1390 71 ASPLRFR|LQ 0.098 . LmjF.35.1390 84 LCFTCFR|AS 0.082 . LmjF.35.1390 100 IINTPAR|RA 0.153 . LmjF.35.1390 101 INTPARR|AS 0.139 . LmjF.35.1390 106 RRASDAR|FL 0.147 . LmjF.35.1390 109 SDARFLK|LI 0.219 . LmjF.35.1390 118 GSIENER|GG 0.088 . LmjF.35.1390 153 MSSAMMR|LR 0.112 . LmjF.35.1390 155 SAMMRLR|RE 0.097 . LmjF.35.1390 156 AMMRLRR|EE 0.510 *ProP* LmjF.35.1390 162 REEEEQR|LL 0.091 . LmjF.35.1390 168 RLLSATR|RS 0.088 . LmjF.35.1390 169 LLSATRR|SH 0.408 . LmjF.35.1390 180 GAASLTK|SV 0.095 . LmjF.35.1390 183 SLTKSVK|SF 0.080 . LmjF.35.1390 200 LNAAAAR|EC 0.139 . LmjF.35.1390 219 VTCPVCK|AR 0.059 . LmjF.35.1390 221 CPVCKAR|CS 0.136 . LmjF.35.1390 239 EENPASR|CK 0.101 . LmjF.35.1390 241 NPASRCK|TG 0.069 . LmjF.35.1390 252 HCIWNCR|EC 0.103 . LmjF.35.1390 264 NTLDGDR|CT 0.072 . LmjF.35.1390 269 DRCTSCR|QP 0.088 . LmjF.35.1390 272 TSCRQPR|YW 0.513 *ProP* LmjF.35.1390 287 ALHHMAR|GE 0.130 . LmjF.35.1390 293 RGEDGLR|YC 0.073 . LmjF.35.1390 313 ILVGQAK|ID 0.066 . LmjF.35.1390 316 GQAKIDK|ET 0.070 . LmjF.35.1390 319 KIDKETR|NA 0.139 . LmjF.35.1390 333 QQSAVQR|RK 0.121 . LmjF.35.1390 334 QSAVQRR|KG 0.222 . LmjF.35.1390 335 SAVQRRK|GG 0.104 . LmjF.35.1390 339 RRKGGSK|DR 0.075 . LmjF.35.1390 341 KGGSKDR|DH 0.110 . LmjF.35.1390 349 HNCGDSR|AA 0.120 . LmjF.35.1390 359 GGAAMAK|PD 0.093 . LmjF.35.1390 379 TLEELER|QK 0.087 . LmjF.35.1390 381 EELERQK|QI 0.065 . LmjF.35.1390 388 QIENNEK|RL 0.058 . LmjF.35.1390 389 IENNEKR|LL 0.199 . LmjF.35.1390 393 EKRLLSR|LN 0.077 . LmjF.35.1390 396 LLSRLNR|LH 0.180 . LmjF.35.1390 401 NRLHISR|NL 0.088 . LmjF.35.1390 405 ISRNLQK|TD 0.074 . LmjF.35.1390 413 DGNCLFR|AL 0.111 . LmjF.35.1390 424 QLFGQPR|LH 0.084 . LmjF.35.1390 430 RLHYLVR|SL 0.209 . LmjF.35.1390 455 DGTAEWK|KY 0.059 . LmjF.35.1390 456 GTAEWKK|YL 0.128 . LmjF.35.1390 462 KYLTAMK|EQ 0.069 . LmjF.35.1390 478 CLNAAAR|CF 0.120 . LmjF.35.1390 481 AAARCFR|VN 0.272 . LmjF.35.1390 493 ITSDQER|WH 0.109 . LmjF.35.1390 505 QHDQLGR|TR 0.069 . LmjF.35.1390 507 DQLGRTR|TA 0.091 . LmjF.35.1390 510 GRTRTAR|SD 0.650 *ProP* LmjF.35.1390 516 RSDEAAR|TN 0.097 . LmjF.35.1390 565 LSGELNK|RM 0.066 . LmjF.35.1390 566 SGELNKR|MK 0.162 . LmjF.35.1390 568 ELNKRMK|RN 0.063 . LmjF.35.1390 569 LNKRMKR|NQ 0.459 . LmjF.35.1390 596 GPSTGGR|WA 0.214 . LmjF.35.1390 609 FSHLPSR|PL 0.083 . LmjF.35.1390 617 LPVDPAK|SH 0.088 . LmjF.35.1390 621 PAKSHTR|SS 0.168 . LmjF.35.1390 628 SSDDLVK|SC 0.072 . LmjF.35.1390 646 AVPPVPR|SR 0.101 . LmjF.35.1390 648 PPVPRSR|PH 0.093 . LmjF.35.1390 653 SRPHSCK|SV 0.154 . LmjF.35.1390 658 CKSVTYK|SS 0.117 . LmjF.35.1390 665 SSEPPSR|PP 0.097 . ____________________________^_________________

  • Fasta :-

    >LmjF.35.1390 ATGGAGTACGTAGATAATCTCTTGAACAAGAAGATCGAGCGGGAGCGGCTCGGCGCGGGC GGTGCTGACGTGTCGTCATCGTCTGCGGCTTCGGCGGCCGGAACTAGCAGCAAGCATGAT GATGGACACGGCACTACCGGAGATAGGCAGCTCAAGTCTGCGGCACTGCGACTGTGTTGG CTCTGCAACCGAGCAAGTCCCTTGCGCTTCCGTTTACAAGGAGGCATCCACCTCTGCTTT ACGTGCTTCCGAGCGTCGTACTTGTCGTTGCTCCTCCCCATCATTAACACACCTGCCAGG CGCGCGAGTGACGCGAGATTCTTGAAGCTGATCGGCAGCATTGAGAACGAAAGGGGAGGG TCCGTGTCGTCTCCAACTGCTGAGCTACTCACCAGCATGTACGGTGAGGTAATTGAGCCA CAGCAGGCATCGTTCGTGATGAGCTCAGCCATGATGCGGCTGCGGCGGGAGGAGGAGGAG CAGCGCCTGCTGTCGGCGACGCGGCGCTCTCACAGCGGTGGTGCCGCCAGCCTCACGAAG AGCGTTAAGTCCTTTTGGAATTGCCCGCTGTGTACCTTCCTGAACGCGGCCGCCGCGCGC GAGTGCGAGGCGTGCGGGTTTGTCAATCCAGGCGAGGTCACCTGCCCCGTCTGCAAGGCG CGCTGCTCCCTCGGCATAATAGGCGCCCCGTCGGCTGAGGAGAACCCCGCCAGCAGGTGC AAGACCGGCGAGCCGCATTGCATCTGGAACTGCCGCGAGTGCGGTGGGCTCAACACCCTC GACGGTGACCGTTGCACGTCGTGCCGCCAGCCGCGCTACTGGGCATGCTCGCAGTGCACG GCACTGCACCACATGGCGCGCGGCGAGGATGGCTTGCGCTACTGTCCCACCTGCGGCGCG TACAACACCCCGAATGACATCTTGGTTGGCCAGGCAAAGATCGACAAGGAGACCAGGAAT GCGGGTATGGTGACGGCGCAGCAGAGTGCGGTGCAGCGGCGCAAGGGCGGCAGCAAGGAC CGTGACCACAACTGCGGTGACTCACGCGCTGCAGCAGGCGGTGCTGCCATGGCGAAACCC GACGACCAAATCCTCTTTGGCGTTAACGACGCCCATACGCTGGAGGAGCTGGAGCGGCAG AAGCAAATCGAAAATAATGAAAAACGGCTGCTTTCCCGCCTGAACCGGCTGCACATTTCC CGCAACTTGCAGAAGACGGACGGCAACTGCCTCTTCCGGGCTCTGGCAAACCAGCTCTTT GGGCAGCCACGGCTGCATTACCTCGTCCGATCCCTGGCTACCGCGTACATGAGCGAGCAC TCGGAAGACTACGCCATCCTCTTCGACGGCACGGCGGAGTGGAAGAAGTACCTGACAGCG ATGAAGGAGCAGGGAACCTGGGGTGATGAGCTATGCCTCAACGCTGCCGCCCGTTGCTTT CGGGTTAACATCCACGTCATCACGAGCGACCAGGAGCGCTGGCACATTGTATTCCAGCAC GACCAGCTAGGGCGCACGCGCACGGCTCGCAGCGACGAGGCTGCGAGGACGAACGACGTG GCGCAGACTTTGACCAGTTATGAAGGTGTGTCGCTGTTTCTCGCTTACCTCTCCCCTGTG CATTACGACGACATCACTCCCTTGCCCGTGGCACACCTCCAGCTCGGCGAGCTGCTCAGC GGGGAGCTGAACAAGCGCATGAAGCGCAATCAGACGACACACAGTCCCAGTGACAGTGGT AGCAGCACTTCTGCATTAGTATCAGCAGGCCCCAGCACCGGCGGTCGCTGGGCGGATGCT TCGAACTTTTCACACCTGCCTTCCCGTCCGCTTCCCGTGGACCCGGCTAAGTCGCACACG AGGTCGTCTGATGACCTTGTTAAGTCGTGCCTGGAGTCGCCGACCGTGTCAAACGCGGCG GTGCCACCGGTGCCACGCTCGCGGCCGCATTCCTGCAAGTCGGTCACATACAAGAGTTCC GAGCCGCCGTCGCGGCCCCCGCCGACTTCGCCGACTAGCTTGCCAAGCGAGTACACATGC TAG
  • Download Fasta

  • Fasta :-

    MEYVDNLLNKKIERERLGAGGADVSSSSAASAAGTSSKHDDGHGTTGDRQLKSAALRLCW LCNRASPLRFRLQGGIHLCFTCFRASYLSLLLPIINTPARRASDARFLKLIGSIENERGG SVSSPTAELLTSMYGEVIEPQQASFVMSSAMMRLRREEEEQRLLSATRRSHSGGAASLTK SVKSFWNCPLCTFLNAAAARECEACGFVNPGEVTCPVCKARCSLGIIGAPSAEENPASRC KTGEPHCIWNCRECGGLNTLDGDRCTSCRQPRYWACSQCTALHHMARGEDGLRYCPTCGA YNTPNDILVGQAKIDKETRNAGMVTAQQSAVQRRKGGSKDRDHNCGDSRAAAGGAAMAKP DDQILFGVNDAHTLEELERQKQIENNEKRLLSRLNRLHISRNLQKTDGNCLFRALANQLF GQPRLHYLVRSLATAYMSEHSEDYAILFDGTAEWKKYLTAMKEQGTWGDELCLNAAARCF RVNIHVITSDQERWHIVFQHDQLGRTRTARSDEAARTNDVAQTLTSYEGVSLFLAYLSPV HYDDITPLPVAHLQLGELLSGELNKRMKRNQTTHSPSDSGSSTSALVSAGPSTGGRWADA SNFSHLPSRPLPVDPAKSHTRSSDDLVKSCLESPTVSNAAVPPVPRSRPHSCKSVTYKSS EPPSRPPPTSPTSLPSEYTC

  • title: Zn binding site
  • coordinates: C188-C218
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.35.1390172 SRRSHSGGAA0.997unspLmjF.35.1390172 SRRSHSGGAA0.997unspLmjF.35.1390172 SRRSHSGGAA0.997unspLmjF.35.1390231 SIGAPSAEEN0.997unspLmjF.35.1390511 SRTARSDEAA0.996unspLmjF.35.1390575 SQTTHSPSDS0.997unspLmjF.35.1390622 SSHTRSSDDL0.994unspLmjF.35.1390651 SSRPHSCKSV0.997unspLmjF.35.1390670 SPPPTSPTSL0.992unspLmjF.35.1390103 SARRASDARF0.991unspLmjF.35.1390170 SATRRSHSGG0.994unsp

LmjF.35.1390      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India