LmjF.35.2350 | aminopeptidase P, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004177      GO:0030145      

  • Computed_GO_Functions:  aminopeptidase activity      manganese ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.35.2350OTHER0.9996490.0001730.000178
No Results

  • Fasta :-

    >LmjF.35.2350 MSAHDKSLAYPFPISMKMYREQRERLGASLQQAFPEGGHAAVLRAASEVPVNSTDCNYLF VQESYFHYLFGAEIPDAYGAVLAGGKSVFFIPRLPADFATWMGPLPTPQSVKAQLEVEEV HYVDEMEQVLMSCGVHTAEVLKGTNTDSGLEVLQAKLPEGTALATSTDYLYRVLSSQRCY KTALEADVLKYVCKVSSAAHVKVMQIAKPGMSQHHLESTFLHDVYYNGGCRRVSYTCICA TGPHGATLHYPDNNCVIEDGTMALLDMGGNYRGYAADITCSFPVNGKFTEAQKTIYNAVL DAHDRVMRAMKPGVEWVDMHLLAIRTTCMHLIAAGILKGDIETLMAKEIMQYFQPHGLGH LIGIDVHDVGGYMEGCPERPTKKDCCRLRTARTIEEGLYMTVEPGCYFNTALLEMAKANP DVQVHLCMEKLEEYVNFGGVRIESDVLVTKDGVVNYTLVPRTVEEIERTMAGAPFTKEVE VYHN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/136 Sequence name : 136 Sequence length : 484 VALUES OF COMPUTED PARAMETERS Coef20 : 3.820 CoefTot : -0.648 ChDiff : -17 ZoneTo : 20 KR : 3 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.106 1.706 0.188 0.532 MesoH : -0.164 0.367 -0.289 0.298 MuHd_075 : 26.869 15.779 5.402 6.024 MuHd_095 : 28.302 8.791 6.407 4.596 MuHd_100 : 28.856 10.234 6.270 5.285 MuHd_105 : 22.976 11.017 5.601 4.910 Hmax_075 : 7.525 6.737 -0.667 3.815 Hmax_095 : 6.738 2.100 -0.076 2.573 Hmax_100 : 7.300 4.700 -1.148 2.740 Hmax_105 : 7.817 5.367 -1.148 3.127 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9725 0.0275 DFMC : 0.9641 0.0359
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 484 LmjF.35.2350 MSAHDKSLAYPFPISMKMYREQRERLGASLQQAFPEGGHAAVLRAASEVPVNSTDCNYLFVQESYFHYLFGAEIPDAYGA 80 VLAGGKSVFFIPRLPADFATWMGPLPTPQSVKAQLEVEEVHYVDEMEQVLMSCGVHTAEVLKGTNTDSGLEVLQAKLPEG 160 TALATSTDYLYRVLSSQRCYKTALEADVLKYVCKVSSAAHVKVMQIAKPGMSQHHLESTFLHDVYYNGGCRRVSYTCICA 240 TGPHGATLHYPDNNCVIEDGTMALLDMGGNYRGYAADITCSFPVNGKFTEAQKTIYNAVLDAHDRVMRAMKPGVEWVDMH 320 LLAIRTTCMHLIAAGILKGDIETLMAKEIMQYFQPHGLGHLIGIDVHDVGGYMEGCPERPTKKDCCRLRTARTIEEGLYM 400 TVEPGCYFNTALLEMAKANPDVQVHLCMEKLEEYVNFGGVRIESDVLVTKDGVVNYTLVPRTVEEIERTMAGAPFTKEVE 480 VYHN 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.35.2350 6 -MSAHDK|SL 0.095 . LmjF.35.2350 17 PFPISMK|MY 0.065 . LmjF.35.2350 20 ISMKMYR|EQ 0.103 . LmjF.35.2350 23 KMYREQR|ER 0.156 . LmjF.35.2350 25 YREQRER|LG 0.078 . LmjF.35.2350 44 GHAAVLR|AA 0.185 . LmjF.35.2350 86 AVLAGGK|SV 0.081 . LmjF.35.2350 93 SVFFIPR|LP 0.084 . LmjF.35.2350 112 PTPQSVK|AQ 0.064 . LmjF.35.2350 142 HTAEVLK|GT 0.066 . LmjF.35.2350 156 LEVLQAK|LP 0.061 . LmjF.35.2350 172 STDYLYR|VL 0.092 . LmjF.35.2350 178 RVLSSQR|CY 0.082 . LmjF.35.2350 181 SSQRCYK|TA 0.147 . LmjF.35.2350 190 LEADVLK|YV 0.092 . LmjF.35.2350 194 VLKYVCK|VS 0.072 . LmjF.35.2350 202 SSAAHVK|VM 0.074 . LmjF.35.2350 208 KVMQIAK|PG 0.065 . LmjF.35.2350 231 YYNGGCR|RV 0.084 . LmjF.35.2350 232 YNGGCRR|VS 0.128 . LmjF.35.2350 272 DMGGNYR|GY 0.088 . LmjF.35.2350 287 SFPVNGK|FT 0.075 . LmjF.35.2350 293 KFTEAQK|TI 0.061 . LmjF.35.2350 305 VLDAHDR|VM 0.080 . LmjF.35.2350 308 AHDRVMR|AM 0.306 . LmjF.35.2350 311 RVMRAMK|PG 0.145 . LmjF.35.2350 325 MHLLAIR|TT 0.080 . LmjF.35.2350 338 IAAGILK|GD 0.071 . LmjF.35.2350 347 IETLMAK|EI 0.065 . LmjF.35.2350 379 MEGCPER|PT 0.082 . LmjF.35.2350 382 CPERPTK|KD 0.155 . LmjF.35.2350 383 PERPTKK|DC 0.121 . LmjF.35.2350 387 TKKDCCR|LR 0.084 . LmjF.35.2350 389 KDCCRLR|TA 0.143 . LmjF.35.2350 392 CRLRTAR|TI 0.491 . LmjF.35.2350 417 ALLEMAK|AN 0.068 . LmjF.35.2350 430 VHLCMEK|LE 0.058 . LmjF.35.2350 441 VNFGGVR|IE 0.118 . LmjF.35.2350 450 SDVLVTK|DG 0.064 . LmjF.35.2350 461 NYTLVPR|TV 0.161 . LmjF.35.2350 468 TVEEIER|TM 0.085 . LmjF.35.2350 477 AGAPFTK|EV 0.090 . ____________________________^_________________

  • Fasta :-

    >LmjF.35.2350 ATGTCTGCACACGATAAGAGCTTGGCGTACCCCTTCCCCATCTCGATGAAGATGTATCGA GAGCAACGTGAGCGGCTGGGTGCGTCGCTCCAGCAGGCGTTCCCAGAGGGTGGCCATGCG GCGGTGCTGCGGGCCGCCTCTGAGGTCCCCGTGAACTCGACGGACTGCAACTACCTCTTC GTGCAGGAGAGCTACTTCCACTACCTCTTCGGCGCGGAGATCCCGGACGCGTACGGCGCT GTGCTCGCAGGCGGCAAGAGCGTCTTCTTCATTCCGCGGCTACCGGCGGATTTCGCGACG TGGATGGGCCCGCTGCCGACACCGCAGAGCGTGAAGGCGCAGCTGGAGGTGGAAGAGGTG CACTACGTGGACGAGATGGAGCAGGTGCTGATGAGCTGCGGGGTACACACCGCCGAGGTG CTGAAGGGCACGAACACGGACAGCGGTCTCGAGGTGCTGCAGGCGAAGCTGCCGGAGGGG ACTGCGCTGGCAACGTCCACCGACTATCTTTATCGTGTGCTGAGCTCGCAGCGCTGCTAC AAGACAGCCCTTGAGGCTGATGTGCTCAAGTATGTGTGCAAGGTGTCGAGCGCCGCGCAC GTCAAAGTGATGCAGATCGCGAAACCCGGCATGTCGCAGCACCATCTCGAGTCTACATTT CTCCACGACGTGTACTACAATGGCGGCTGCCGCCGTGTGAGCTACACTTGCATCTGCGCC ACGGGCCCCCACGGTGCTACGCTGCATTACCCGGACAACAACTGCGTGATCGAGGACGGC ACGATGGCGCTGCTGGACATGGGCGGCAACTATCGCGGCTACGCTGCCGACATCACCTGC AGCTTCCCTGTGAACGGCAAGTTCACCGAGGCGCAGAAGACCATTTACAACGCGGTGCTC GACGCGCACGACAGGGTGATGCGCGCGATGAAGCCGGGTGTTGAGTGGGTGGACATGCAC CTGCTCGCCATCCGCACAACCTGCATGCACCTGATCGCGGCGGGTATCCTCAAGGGCGAC ATCGAAACGCTCATGGCGAAGGAGATCATGCAGTACTTCCAACCACACGGCCTCGGCCAC CTTATCGGCATCGACGTGCATGACGTTGGCGGCTACATGGAGGGTTGCCCTGAACGGCCG ACGAAGAAGGACTGCTGCCGTCTGCGCACCGCGCGCACAATCGAGGAGGGGCTTTACATG ACCGTCGAGCCTGGCTGCTACTTTAACACGGCACTGCTGGAGATGGCGAAGGCAAACCCG GATGTGCAGGTGCACCTGTGCATGGAAAAGCTCGAGGAGTACGTGAATTTTGGTGGCGTG CGTATCGAAAGCGACGTCCTGGTCACGAAGGACGGCGTGGTGAACTACACTCTAGTGCCA CGCACGGTGGAAGAGATCGAGAGAACGATGGCGGGTGCGCCCTTCACAAAGGAGGTGGAG GTGTACCACAACTGA
  • Download Fasta

  • Fasta :-

    MSAHDKSLAYPFPISMKMYREQRERLGASLQQAFPEGGHAAVLRAASEVPVNSTDCNYLF VQESYFHYLFGAEIPDAYGAVLAGGKSVFFIPRLPADFATWMGPLPTPQSVKAQLEVEEV HYVDEMEQVLMSCGVHTAEVLKGTNTDSGLEVLQAKLPEGTALATSTDYLYRVLSSQRCY KTALEADVLKYVCKVSSAAHVKVMQIAKPGMSQHHLESTFLHDVYYNGGCRRVSYTCICA TGPHGATLHYPDNNCVIEDGTMALLDMGGNYRGYAADITCSFPVNGKFTEAQKTIYNAVL DAHDRVMRAMKPGVEWVDMHLLAIRTTCMHLIAAGILKGDIETLMAKEIMQYFQPHGLGH LIGIDVHDVGGYMEGCPERPTKKDCCRLRTARTIEEGLYMTVEPGCYFNTALLEMAKANP DVQVHLCMEKLEEYVNFGGVRIESDVLVTKDGVVNYTLVPRTVEEIERTMAGAPFTKEVE VYHN

  • title: active site
  • coordinates: H249,D266,D277,H360,E403,E443
No Results
No Results
IDSitePeptideScoreMethod
LmjF.35.2350234 SCRRVSYTCI0.995unsp

LmjF.35.2350      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India