LmjF.35.2410 | ubiquitin hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.35.2410OTHER0.9996330.0000010.000366
No Results

  • Fasta :-

    >LmjF.35.2410 MSDTTGTSSVHSQRQRCNIVMQRRRRLCSKSSTVRSSAQRISRKPSAVDAPAAASTVVPA SPVLALQKLGSARKAARDTYGNTTPKANGLHGYGQRSRASPGDGNNVDTALEHTSLPATN RSDELPNVFGTDSSSTARVSTLHDDSHVCPDSASTKGPLKGASGAMARDALSFDVYGGPD VFKPHPLRLLRGPRRGAGSGSAESTSAAEEGSLCKQTCGAAFNNAGAAERGTRGRSLLAY SCNAATQDKTTPPPSAHLNQPSKGSYPSSTPAAKGFPPRNVSENLGGTIRAIATINNADS SNVLASPPLPVSHRPSVGSDDDAASITSARQPVRGRDEAGAARALLVVPQLFHRNGSTPP YQHLSPVCGSLPSQSQAGMMTVAETKSTGSVDSFSDKGSFSSRALRVEPQVPPMRPSGSA GATKKSLLSTSTRSGGSASTKVPSAHSIARLHAAPIPLRNFGATCYLNSVVQCLLCTPGL LRKLNIDRQRIVRECEGRRRSEAKQKPDDTEGQSCAERKAPATSSLIDLGTACAAHHVAV QQLLVSLKAACAECNNEFSSNGQKDAHEFLITLLGVIDKEVCRSKPGNQETFRDFEDEKK SDVYARWVSWMQQENDSTVYDLFGGITGCTVKCSSCDLTSYRFEVLLHISLPISYRSRSQ GGGTDIELSDGKFDGKATPKGVATADELLREMFFSERGESLNGPMQVTCERCKQLRDKRI WYSMEYWPPIVVLHLKRFNNAGVKDETAVVFPYTFHPHRCVKYQLYSVCCHRGTCSSGHY TAYTYVQADDKKSVARKKAPTVAAFSDIYHPLLKGTRSDRIFSPQTLPRRGGAGIFGWFD GVGIRNGGSNARASSEALSPKRNGRADGKDRVRSAGRTAKAGKWYLCNDKNITEVTALDV LSMTKEAYILFYRRVDDGDGTII
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/230 Sequence name : 230 Sequence length : 923 VALUES OF COMPUTED PARAMETERS Coef20 : 4.288 CoefTot : -0.681 ChDiff : 34 ZoneTo : 102 KR : 18 DE : 3 CleavSite : 100 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.459 1.406 0.311 0.539 MesoH : -0.216 0.192 -0.244 0.131 MuHd_075 : 60.020 24.491 15.336 11.347 MuHd_095 : 36.595 19.799 10.867 8.523 MuHd_100 : 28.788 21.294 10.360 8.210 MuHd_105 : 38.489 26.786 11.095 9.880 Hmax_075 : 10.900 9.917 2.960 2.200 Hmax_095 : 8.138 3.200 -0.661 4.110 Hmax_100 : 1.100 8.800 2.224 3.980 Hmax_105 : 14.817 18.667 4.981 5.052 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0282 0.9718 DFMC : 0.0153 0.9847 This protein is probably imported in mitochondria. f(Ser) = 0.1569 f(Arg) = 0.1275 CMi = 0.63141 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 923 LmjF.35.2410 MSDTTGTSSVHSQRQRCNIVMQRRRRLCSKSSTVRSSAQRISRKPSAVDAPAAASTVVPASPVLALQKLGSARKAARDTY 80 GNTTPKANGLHGYGQRSRASPGDGNNVDTALEHTSLPATNRSDELPNVFGTDSSSTARVSTLHDDSHVCPDSASTKGPLK 160 GASGAMARDALSFDVYGGPDVFKPHPLRLLRGPRRGAGSGSAESTSAAEEGSLCKQTCGAAFNNAGAAERGTRGRSLLAY 240 SCNAATQDKTTPPPSAHLNQPSKGSYPSSTPAAKGFPPRNVSENLGGTIRAIATINNADSSNVLASPPLPVSHRPSVGSD 320 DDAASITSARQPVRGRDEAGAARALLVVPQLFHRNGSTPPYQHLSPVCGSLPSQSQAGMMTVAETKSTGSVDSFSDKGSF 400 SSRALRVEPQVPPMRPSGSAGATKKSLLSTSTRSGGSASTKVPSAHSIARLHAAPIPLRNFGATCYLNSVVQCLLCTPGL 480 LRKLNIDRQRIVRECEGRRRSEAKQKPDDTEGQSCAERKAPATSSLIDLGTACAAHHVAVQQLLVSLKAACAECNNEFSS 560 NGQKDAHEFLITLLGVIDKEVCRSKPGNQETFRDFEDEKKSDVYARWVSWMQQENDSTVYDLFGGITGCTVKCSSCDLTS 640 YRFEVLLHISLPISYRSRSQGGGTDIELSDGKFDGKATPKGVATADELLREMFFSERGESLNGPMQVTCERCKQLRDKRI 720 WYSMEYWPPIVVLHLKRFNNAGVKDETAVVFPYTFHPHRCVKYQLYSVCCHRGTCSSGHYTAYTYVQADDKKSVARKKAP 800 TVAAFSDIYHPLLKGTRSDRIFSPQTLPRRGGAGIFGWFDGVGIRNGGSNARASSEALSPKRNGRADGKDRVRSAGRTAK 880 AGKWYLCNDKNITEVTALDVLSMTKEAYILFYRRVDDGDGTII 960 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................................................................................ 880 ........................................... 960 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.35.2410 14 SSVHSQR|QR 0.112 . LmjF.35.2410 16 VHSQRQR|CN 0.102 . LmjF.35.2410 23 CNIVMQR|RR 0.067 . LmjF.35.2410 24 NIVMQRR|RR 0.093 . LmjF.35.2410 25 IVMQRRR|RL 0.122 . LmjF.35.2410 26 VMQRRRR|LC 0.477 . LmjF.35.2410 30 RRRLCSK|SS 0.084 . LmjF.35.2410 35 SKSSTVR|SS 0.147 . LmjF.35.2410 40 VRSSAQR|IS 0.089 . LmjF.35.2410 43 SAQRISR|KP 0.250 . LmjF.35.2410 44 AQRISRK|PS 0.083 . LmjF.35.2410 68 PVLALQK|LG 0.056 . LmjF.35.2410 73 QKLGSAR|KA 0.100 . LmjF.35.2410 74 KLGSARK|AA 0.096 . LmjF.35.2410 77 SARKAAR|DT 0.169 . LmjF.35.2410 86 YGNTTPK|AN 0.075 . LmjF.35.2410 96 LHGYGQR|SR 0.096 . LmjF.35.2410 98 GYGQRSR|AS 0.086 . LmjF.35.2410 121 SLPATNR|SD 0.105 . LmjF.35.2410 138 DSSSTAR|VS 0.096 . LmjF.35.2410 156 PDSASTK|GP 0.074 . LmjF.35.2410 160 STKGPLK|GA 0.077 . LmjF.35.2410 168 ASGAMAR|DA 0.114 . LmjF.35.2410 183 GGPDVFK|PH 0.057 . LmjF.35.2410 188 FKPHPLR|LL 0.081 . LmjF.35.2410 191 HPLRLLR|GP 0.222 . LmjF.35.2410 194 RLLRGPR|RG 0.181 . LmjF.35.2410 195 LLRGPRR|GA 0.262 . LmjF.35.2410 215 EEGSLCK|QT 0.064 . LmjF.35.2410 230 NAGAAER|GT 0.079 . LmjF.35.2410 233 AAERGTR|GR 0.162 . LmjF.35.2410 235 ERGTRGR|SL 0.153 . LmjF.35.2410 249 NAATQDK|TT 0.060 . LmjF.35.2410 263 HLNQPSK|GS 0.071 . LmjF.35.2410 274 SSTPAAK|GF 0.067 . LmjF.35.2410 279 AKGFPPR|NV 0.220 . LmjF.35.2410 290 NLGGTIR|AI 0.094 . LmjF.35.2410 314 PLPVSHR|PS 0.086 . LmjF.35.2410 330 ASITSAR|QP 0.098 . LmjF.35.2410 334 SARQPVR|GR 0.119 . LmjF.35.2410 336 RQPVRGR|DE 0.101 . LmjF.35.2410 343 DEAGAAR|AL 0.089 . LmjF.35.2410 354 VPQLFHR|NG 0.087 . LmjF.35.2410 386 MTVAETK|ST 0.090 . LmjF.35.2410 397 VDSFSDK|GS 0.078 . LmjF.35.2410 403 KGSFSSR|AL 0.124 . LmjF.35.2410 406 FSSRALR|VE 0.272 . LmjF.35.2410 415 PQVPPMR|PS 0.111 . LmjF.35.2410 424 GSAGATK|KS 0.062 . LmjF.35.2410 425 SAGATKK|SL 0.124 . LmjF.35.2410 433 LLSTSTR|SG 0.170 . LmjF.35.2410 441 GGSASTK|VP 0.070 . LmjF.35.2410 450 SAHSIAR|LH 0.095 . LmjF.35.2410 459 AAPIPLR|NF 0.077 . LmjF.35.2410 482 CTPGLLR|KL 0.067 . LmjF.35.2410 483 TPGLLRK|LN 0.083 . LmjF.35.2410 488 RKLNIDR|QR 0.077 . LmjF.35.2410 490 LNIDRQR|IV 0.149 . LmjF.35.2410 493 DRQRIVR|EC 0.297 . LmjF.35.2410 498 VRECEGR|RR 0.087 . LmjF.35.2410 499 RECEGRR|RS 0.116 . LmjF.35.2410 500 ECEGRRR|SE 0.171 . LmjF.35.2410 504 RRRSEAK|QK 0.093 . LmjF.35.2410 506 RSEAKQK|PD 0.084 . LmjF.35.2410 518 GQSCAER|KA 0.092 . LmjF.35.2410 519 QSCAERK|AP 0.082 . LmjF.35.2410 548 QLLVSLK|AA 0.074 . LmjF.35.2410 564 FSSNGQK|DA 0.099 . LmjF.35.2410 579 LLGVIDK|EV 0.081 . LmjF.35.2410 583 IDKEVCR|SK 0.137 . LmjF.35.2410 585 KEVCRSK|PG 0.062 . LmjF.35.2410 593 GNQETFR|DF 0.166 . LmjF.35.2410 599 RDFEDEK|KS 0.064 . LmjF.35.2410 600 DFEDEKK|SD 0.098 . LmjF.35.2410 606 KSDVYAR|WV 0.248 . LmjF.35.2410 632 ITGCTVK|CS 0.064 . LmjF.35.2410 642 CDLTSYR|FE 0.070 . LmjF.35.2410 656 SLPISYR|SR 0.219 . LmjF.35.2410 658 PISYRSR|SQ 0.231 . LmjF.35.2410 672 IELSDGK|FD 0.070 . LmjF.35.2410 676 DGKFDGK|AT 0.070 . LmjF.35.2410 680 DGKATPK|GV 0.082 . LmjF.35.2410 690 TADELLR|EM 0.089 . LmjF.35.2410 697 EMFFSER|GE 0.093 . LmjF.35.2410 711 MQVTCER|CK 0.068 . LmjF.35.2410 713 VTCERCK|QL 0.068 . LmjF.35.2410 716 ERCKQLR|DK 0.134 . LmjF.35.2410 718 CKQLRDK|RI 0.070 . LmjF.35.2410 719 KQLRDKR|IW 0.497 . LmjF.35.2410 736 IVVLHLK|RF 0.060 . LmjF.35.2410 737 VVLHLKR|FN 0.205 . LmjF.35.2410 744 FNNAGVK|DE 0.068 . LmjF.35.2410 759 YTFHPHR|CV 0.135 . LmjF.35.2410 762 HPHRCVK|YQ 0.149 . LmjF.35.2410 772 YSVCCHR|GT 0.111 . LmjF.35.2410 791 YVQADDK|KS 0.055 . LmjF.35.2410 792 VQADDKK|SV 0.190 . LmjF.35.2410 796 DKKSVAR|KK 0.106 . LmjF.35.2410 797 KKSVARK|KA 0.139 . LmjF.35.2410 798 KSVARKK|AP 0.108 . LmjF.35.2410 814 IYHPLLK|GT 0.062 . LmjF.35.2410 817 PLLKGTR|SD 0.094 . LmjF.35.2410 820 KGTRSDR|IF 0.278 . LmjF.35.2410 829 SPQTLPR|RG 0.147 . LmjF.35.2410 830 PQTLPRR|GG 0.123 . LmjF.35.2410 845 FDGVGIR|NG 0.078 . LmjF.35.2410 852 NGGSNAR|AS 0.108 . LmjF.35.2410 861 SEALSPK|RN 0.074 . LmjF.35.2410 862 EALSPKR|NG 0.120 . LmjF.35.2410 865 SPKRNGR|AD 0.430 . LmjF.35.2410 869 NGRADGK|DR 0.063 . LmjF.35.2410 871 RADGKDR|VR 0.107 . LmjF.35.2410 873 DGKDRVR|SA 0.151 . LmjF.35.2410 877 RVRSAGR|TA 0.111 . LmjF.35.2410 880 SAGRTAK|AG 0.154 . LmjF.35.2410 883 RTAKAGK|WY 0.064 . LmjF.35.2410 890 WYLCNDK|NI 0.058 . LmjF.35.2410 905 DVLSMTK|EA 0.058 . LmjF.35.2410 913 AYILFYR|RV 0.134 . LmjF.35.2410 914 YILFYRR|VD 0.103 . ____________________________^_________________

  • Fasta :-

    >LmjF.35.2410 ATGTCGGACACCACCGGCACATCTTCCGTGCATAGTCAGCGGCAAAGATGCAACATAGTG ATGCAGCGAAGGCGTCGCCTCTGCTCCAAGTCTTCTACTGTGCGCTCGTCTGCGCAGCGA ATCTCTCGGAAGCCGAGCGCCGTCGATGCACCTGCTGCCGCCTCCACCGTGGTGCCGGCC TCCCCCGTTTTGGCGTTGCAGAAGCTCGGTTCTGCGAGAAAAGCTGCAAGAGACACGTAC GGCAACACCACGCCCAAAGCAAACGGTCTTCACGGGTACGGCCAACGGTCTCGAGCGTCG CCCGGCGATGGGAACAATGTCGACACTGCCCTAGAGCACACATCTCTGCCTGCGACCAAC AGGAGTGACGAGTTGCCAAACGTCTTCGGCACCGACTCGTCGTCTACTGCACGAGTTTCC ACTCTTCACGACGATTCACATGTGTGCCCGGACAGCGCATCGACAAAAGGGCCGCTGAAG GGCGCCTCAGGGGCTATGGCGCGCGACGCGCTGTCGTTTGATGTGTATGGGGGGCCCGAT GTGTTCAAACCTCACCCTCTGCGGCTGCTGAGGGGGCCAAGGCGAGGTGCTGGGAGCGGG TCTGCCGAATCCACCTCGGCAGCTGAAGAGGGGTCACTCTGCAAGCAAACCTGCGGTGCT GCGTTCAACAATGCTGGCGCTGCAGAGCGCGGAACCAGGGGCCGGTCCCTTCTCGCTTAC TCGTGCAATGCGGCGACGCAGGACAAGACGACGCCGCCCCCGAGTGCGCACCTGAACCAG CCTTCAAAAGGCAGCTACCCTTCTAGCACTCCCGCAGCGAAAGGATTCCCTCCCCGGAAC GTCTCAGAGAATCTGGGCGGCACCATTAGGGCGATAGCAACCATAAACAATGCCGACTCA AGCAATGTGCTTGCCTCTCCTCCACTACCCGTTTCTCACAGGCCCAGTGTAGGATCTGAT GATGATGCAGCATCCATCACCAGTGCGAGACAGCCTGTGCGAGGGCGGGATGAGGCAGGC GCGGCAAGAGCGTTGTTGGTGGTGCCGCAGCTGTTTCATCGCAACGGGTCTACGCCACCT TATCAACACCTCTCTCCCGTTTGCGGGTCCCTTCCCTCGCAGTCACAGGCGGGCATGATG ACTGTGGCCGAGACGAAAAGCACGGGGAGCGTCGACTCTTTTTCCGACAAAGGATCGTTT TCCTCTCGAGCACTGCGCGTCGAGCCTCAAGTTCCGCCAATGCGACCGTCAGGATCTGCA GGGGCGACCAAGAAGTCATTGTTGTCGACGTCGACCCGTAGCGGTGGGTCTGCCAGTACG AAGGTGCCGTCGGCGCACTCCATCGCTCGACTGCACGCCGCGCCGATTCCGCTGCGCAAT TTCGGTGCGACGTGCTATCTGAACTCGGTCGTGCAGTGCCTGCTATGTACGCCTGGCCTG CTCCGCAAGTTGAACATTGACCGTCAACGCATCGTGCGCGAATGTGAGGGGAGGCGCCGC TCCGAGGCGAAGCAAAAGCCGGACGACACCGAAGGGCAAAGCTGTGCAGAGCGCAAAGCC CCGGCAACGTCTTCACTGATTGATTTGGGCACCGCATGCGCCGCGCACCACGTCGCGGTT CAGCAGCTTCTTGTCAGCCTCAAGGCGGCTTGTGCGGAGTGTAACAATGAGTTTTCGTCT AATGGGCAGAAGGACGCGCATGAGTTTCTCATCACGTTGCTGGGGGTGATCGACAAGGAG GTTTGCCGCAGCAAGCCAGGTAACCAGGAAACCTTCAGAGACTTTGAAGATGAGAAAAAG AGTGATGTGTACGCGCGATGGGTGAGCTGGATGCAGCAGGAAAACGACTCGACCGTGTAC GACCTTTTCGGCGGAATCACCGGCTGCACCGTCAAGTGCTCTAGCTGCGACCTGACCTCC TACCGCTTTGAAGTGTTGCTGCACATCTCCTTGCCCATATCTTACCGTTCCCGCTCACAG GGCGGCGGAACCGACATCGAGTTGTCCGACGGGAAGTTCGACGGCAAGGCGACGCCTAAA GGGGTCGCTACCGCGGACGAGCTGCTGCGCGAGATGTTCTTTAGCGAGCGCGGGGAGTCC CTGAATGGGCCGATGCAGGTGACGTGCGAGCGTTGCAAGCAGCTGCGAGACAAACGCATA TGGTATTCAATGGAGTATTGGCCGCCGATCGTGGTGCTTCATCTGAAGCGTTTCAACAAC GCCGGAGTCAAGGATGAGACGGCGGTGGTGTTTCCGTACACGTTTCACCCGCACCGGTGC GTCAAGTATCAGCTGTACAGCGTCTGCTGCCACCGTGGCACTTGCTCCTCCGGGCACTAC ACGGCGTACACTTACGTGCAGGCGGATGACAAGAAATCCGTAGCGCGCAAAAAGGCCCCC ACGGTTGCGGCATTCTCCGATATATACCACCCCTTACTGAAAGGCACGCGAAGCGATCGC ATCTTCAGCCCCCAGACACTTCCGCGCAGGGGTGGCGCCGGTATCTTCGGCTGGTTCGAC GGTGTCGGCATAAGAAACGGCGGCAGTAATGCACGGGCTAGTAGTGAGGCATTGAGTCCC AAAAGAAACGGAAGGGCTGATGGGAAAGATCGAGTCCGTTCGGCAGGGAGGACGGCGAAG GCTGGCAAGTGGTATCTCTGCAACGACAAAAACATCACCGAGGTGACAGCGCTGGACGTG CTGTCGATGACGAAGGAGGCATACATCCTTTTCTACCGGCGCGTTGATGATGGGGACGGG ACGATCATCTGA
  • Download Fasta

  • Fasta :-

    MSDTTGTSSVHSQRQRCNIVMQRRRRLCSKSSTVRSSAQRISRKPSAVDAPAAASTVVPA SPVLALQKLGSARKAARDTYGNTTPKANGLHGYGQRSRASPGDGNNVDTALEHTSLPATN RSDELPNVFGTDSSSTARVSTLHDDSHVCPDSASTKGPLKGASGAMARDALSFDVYGGPD VFKPHPLRLLRGPRRGAGSGSAESTSAAEEGSLCKQTCGAAFNNAGAAERGTRGRSLLAY SCNAATQDKTTPPPSAHLNQPSKGSYPSSTPAAKGFPPRNVSENLGGTIRAIATINNADS SNVLASPPLPVSHRPSVGSDDDAASITSARQPVRGRDEAGAARALLVVPQLFHRNGSTPP YQHLSPVCGSLPSQSQAGMMTVAETKSTGSVDSFSDKGSFSSRALRVEPQVPPMRPSGSA GATKKSLLSTSTRSGGSASTKVPSAHSIARLHAAPIPLRNFGATCYLNSVVQCLLCTPGL LRKLNIDRQRIVRECEGRRRSEAKQKPDDTEGQSCAERKAPATSSLIDLGTACAAHHVAV QQLLVSLKAACAECNNEFSSNGQKDAHEFLITLLGVIDKEVCRSKPGNQETFRDFEDEKK SDVYARWVSWMQQENDSTVYDLFGGITGCTVKCSSCDLTSYRFEVLLHISLPISYRSRSQ GGGTDIELSDGKFDGKATPKGVATADELLREMFFSERGESLNGPMQVTCERCKQLRDKRI WYSMEYWPPIVVLHLKRFNNAGVKDETAVVFPYTFHPHRCVKYQLYSVCCHRGTCSSGHY TAYTYVQADDKKSVARKKAPTVAAFSDIYHPLLKGTRSDRIFSPQTLPRRGGAGIFGWFD GVGIRNGGSNARASSEALSPKRNGRADGKDRVRSAGRTAKAGKWYLCNDKNITEVTALDV LSMTKEAYILFYRRVDDGDGTII

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.35.241046 SSRKPSAVDA0.998unspLmjF.35.241046 SSRKPSAVDA0.998unspLmjF.35.241046 SSRKPSAVDA0.998unspLmjF.35.2410100 SRSRASPGDG0.998unspLmjF.35.2410316 SSHRPSVGSD0.995unspLmjF.35.2410319 SPSVGSDDDA0.993unspLmjF.35.2410393 SGSVDSFSDK0.991unspLmjF.35.2410395 SVDSFSDKGS0.995unspLmjF.35.2410501 SGRRRSEAKQ0.996unspLmjF.35.2410659 SYRSRSQGGG0.995unspLmjF.35.2410854 SNARASSEAL0.996unspLmjF.35.2410859 SSEALSPKRN0.998unspLmjF.35.2410874 SDRVRSAGRT0.995unspLmjF.35.241012 SSSVHSQRQR0.994unspLmjF.35.241042 SAQRISRKPS0.995unsp

LmjF.35.2410      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India