LmjF.35.3450 | DNA-repair protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003677      

  • Computed_GO_Functions:  DNA binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      GO:0031981      GO:0005634      

  • Curated_GO_Components:  cytoplasm      nuclear lumen      nucleus      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.35.3450OTHER0.9843410.0010520.014606
No Results

  • Fasta :-

    >LmjF.35.3450 MSSNTRRAATSVASAATATVDGYLRNMSKRLRIPTAEGGRGTRRKMAMVTSASVPADPAE TRNVTEKDQSNLAADVDEWDEVELPVAFSPAKKQEESESGSLVKKGLTDDGEGEAVKHET AYAVSTVKTEVTTTTTGEADTVTSGGVKEELVSVDTEAAASDRPLMEWAQLPLVGRPRAS DTWRQRDPAYEAMMEQRDLLAAKRRSERIQRVCESLFALLAVLIRARLLWRESCHPGFVK QLLRLHVSRGRGPKRSRCEDPSGKATSAYVFLKAVATAKVLVAESTKPSHRKPSLAPAWV TCAKDAVQNKTSAAVKVLIETINDYFKLEALAAPASSSGREAPVGAAAYTVAPSSAEQDF SDWSMPVKPGFLFTKTAERHCRVSADAPLELPHPLYFSLVFLALARVAGLSCRLVVAKLG KTQLEKARAAGPAGDTANGYNDTSEGKDNTADGESEDSTRRPLRVLSIFEGREKRKASDR TDASGVARAGKGSKRQRPSAGLAEDTKDREELKSKKLPTSCYWVEVWSAERESFLSVNPC QSCATLWGASYTLSVSGHVAVDATPRYISKYSTAYAYGRRLGTCRQHRFLWRDELAWDDT RELSEVLRATFNVAAPHTSSLAQRQQQRESRQLHSLMYSEAVPTTLNALHRHPLYVTDSD LARHEGVYPKDANTTVGSVKGRLVYKRSAVVSLRSRDGWLREGRSLLTEDQPAYKVVAPP ASRPFAAPSTLYGRWQTQPFEPLPLTAGDPPSIPHHGRTSWYILLDKAPPQGIVHLTQPQ ISRVARRMKLDFCLAVVGFERRRTDEHRRGHWETVINGIVVKETDSVALLHAYEEWVQLV QEQEATKRRQRAFHWWLLLAQRLLALKRLQDQYAKGLGAGSMPMQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/30 Sequence name : 30 Sequence length : 885 VALUES OF COMPUTED PARAMETERS Coef20 : 5.325 CoefTot : 0.890 ChDiff : 23 ZoneTo : 56 KR : 10 DE : 2 CleavSite : 46 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.235 1.912 0.246 0.619 MesoH : -0.369 0.395 -0.297 0.212 MuHd_075 : 37.411 13.793 7.883 6.462 MuHd_095 : 45.441 23.828 10.635 8.472 MuHd_100 : 49.318 21.324 10.691 8.727 MuHd_105 : 44.379 18.902 10.426 7.830 Hmax_075 : 9.450 -1.600 0.421 1.900 Hmax_095 : 12.800 14.000 1.500 3.614 Hmax_100 : 11.200 14.000 1.500 2.720 Hmax_105 : 10.033 11.083 0.768 3.080 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1296 0.8704 DFMC : 0.1272 0.8728 This protein is probably imported in mitochondria. f(Ser) = 0.1250 f(Arg) = 0.1429 CMi = 0.46296 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 885 LmjF.35.3450 MSSNTRRAATSVASAATATVDGYLRNMSKRLRIPTAEGGRGTRRKMAMVTSASVPADPAETRNVTEKDQSNLAADVDEWD 80 EVELPVAFSPAKKQEESESGSLVKKGLTDDGEGEAVKHETAYAVSTVKTEVTTTTTGEADTVTSGGVKEELVSVDTEAAA 160 SDRPLMEWAQLPLVGRPRASDTWRQRDPAYEAMMEQRDLLAAKRRSERIQRVCESLFALLAVLIRARLLWRESCHPGFVK 240 QLLRLHVSRGRGPKRSRCEDPSGKATSAYVFLKAVATAKVLVAESTKPSHRKPSLAPAWVTCAKDAVQNKTSAAVKVLIE 320 TINDYFKLEALAAPASSSGREAPVGAAAYTVAPSSAEQDFSDWSMPVKPGFLFTKTAERHCRVSADAPLELPHPLYFSLV 400 FLALARVAGLSCRLVVAKLGKTQLEKARAAGPAGDTANGYNDTSEGKDNTADGESEDSTRRPLRVLSIFEGREKRKASDR 480 TDASGVARAGKGSKRQRPSAGLAEDTKDREELKSKKLPTSCYWVEVWSAERESFLSVNPCQSCATLWGASYTLSVSGHVA 560 VDATPRYISKYSTAYAYGRRLGTCRQHRFLWRDELAWDDTRELSEVLRATFNVAAPHTSSLAQRQQQRESRQLHSLMYSE 640 AVPTTLNALHRHPLYVTDSDLARHEGVYPKDANTTVGSVKGRLVYKRSAVVSLRSRDGWLREGRSLLTEDQPAYKVVAPP 720 ASRPFAAPSTLYGRWQTQPFEPLPLTAGDPPSIPHHGRTSWYILLDKAPPQGIVHLTQPQISRVARRMKLDFCLAVVGFE 800 RRRTDEHRRGHWETVINGIVVKETDSVALLHAYEEWVQLVQEQEATKRRQRAFHWWLLLAQRLLALKRLQDQYAKGLGAG 880 SMPMQ 960 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ..........................................................................P..... 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................................................................................ 880 ..... 960 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.35.3450 6 -MSSNTR|RA 0.101 . LmjF.35.3450 7 MSSNTRR|AA 0.303 . LmjF.35.3450 25 TVDGYLR|NM 0.083 . LmjF.35.3450 29 YLRNMSK|RL 0.059 . LmjF.35.3450 30 LRNMSKR|LR 0.218 . LmjF.35.3450 32 NMSKRLR|IP 0.103 . LmjF.35.3450 40 PTAEGGR|GT 0.094 . LmjF.35.3450 43 EGGRGTR|RK 0.180 . LmjF.35.3450 44 GGRGTRR|KM 0.130 . LmjF.35.3450 45 GRGTRRK|MA 0.143 . LmjF.35.3450 62 ADPAETR|NV 0.116 . LmjF.35.3450 67 TRNVTEK|DQ 0.099 . LmjF.35.3450 92 VAFSPAK|KQ 0.071 . LmjF.35.3450 93 AFSPAKK|QE 0.108 . LmjF.35.3450 104 ESGSLVK|KG 0.058 . LmjF.35.3450 105 SGSLVKK|GL 0.167 . LmjF.35.3450 117 GEGEAVK|HE 0.061 . LmjF.35.3450 128 YAVSTVK|TE 0.054 . LmjF.35.3450 148 VTSGGVK|EE 0.059 . LmjF.35.3450 163 EAAASDR|PL 0.087 . LmjF.35.3450 176 QLPLVGR|PR 0.069 . LmjF.35.3450 178 PLVGRPR|AS 0.099 . LmjF.35.3450 184 RASDTWR|QR 0.157 . LmjF.35.3450 186 SDTWRQR|DP 0.101 . LmjF.35.3450 197 EAMMEQR|DL 0.123 . LmjF.35.3450 203 RDLLAAK|RR 0.063 . LmjF.35.3450 204 DLLAAKR|RS 0.141 . LmjF.35.3450 205 LLAAKRR|SE 0.351 . LmjF.35.3450 208 AKRRSER|IQ 0.255 . LmjF.35.3450 211 RSERIQR|VC 0.202 . LmjF.35.3450 225 LLAVLIR|AR 0.072 . LmjF.35.3450 227 AVLIRAR|LL 0.075 . LmjF.35.3450 231 RARLLWR|ES 0.089 . LmjF.35.3450 240 CHPGFVK|QL 0.059 . LmjF.35.3450 244 FVKQLLR|LH 0.066 . LmjF.35.3450 249 LRLHVSR|GR 0.131 . LmjF.35.3450 251 LHVSRGR|GP 0.078 . LmjF.35.3450 254 SRGRGPK|RS 0.155 . LmjF.35.3450 255 RGRGPKR|SR 0.267 . LmjF.35.3450 257 RGPKRSR|CE 0.102 . LmjF.35.3450 264 CEDPSGK|AT 0.070 . LmjF.35.3450 273 SAYVFLK|AV 0.091 . LmjF.35.3450 279 KAVATAK|VL 0.064 . LmjF.35.3450 287 LVAESTK|PS 0.064 . LmjF.35.3450 291 STKPSHR|KP 0.091 . LmjF.35.3450 292 TKPSHRK|PS 0.084 . LmjF.35.3450 304 AWVTCAK|DA 0.087 . LmjF.35.3450 310 KDAVQNK|TS 0.071 . LmjF.35.3450 316 KTSAAVK|VL 0.069 . LmjF.35.3450 327 TINDYFK|LE 0.060 . LmjF.35.3450 340 PASSSGR|EA 0.127 . LmjF.35.3450 368 DWSMPVK|PG 0.068 . LmjF.35.3450 375 PGFLFTK|TA 0.072 . LmjF.35.3450 379 FTKTAER|HC 0.076 . LmjF.35.3450 382 TAERHCR|VS 0.302 . LmjF.35.3450 406 VFLALAR|VA 0.083 . LmjF.35.3450 413 VAGLSCR|LV 0.116 . LmjF.35.3450 418 CRLVVAK|LG 0.073 . LmjF.35.3450 421 VVAKLGK|TQ 0.058 . LmjF.35.3450 426 GKTQLEK|AR 0.061 . LmjF.35.3450 428 TQLEKAR|AA 0.223 . LmjF.35.3450 447 NDTSEGK|DN 0.071 . LmjF.35.3450 460 ESEDSTR|RP 0.081 . LmjF.35.3450 461 SEDSTRR|PL 0.092 . LmjF.35.3450 464 STRRPLR|VL 0.364 . LmjF.35.3450 472 LSIFEGR|EK 0.087 . LmjF.35.3450 474 IFEGREK|RK 0.054 . LmjF.35.3450 475 FEGREKR|KA 0.649 *ProP* LmjF.35.3450 476 EGREKRK|AS 0.099 . LmjF.35.3450 480 KRKASDR|TD 0.099 . LmjF.35.3450 488 DASGVAR|AG 0.130 . LmjF.35.3450 491 GVARAGK|GS 0.204 . LmjF.35.3450 494 RAGKGSK|RQ 0.058 . LmjF.35.3450 495 AGKGSKR|QR 0.144 . LmjF.35.3450 497 KGSKRQR|PS 0.105 . LmjF.35.3450 507 GLAEDTK|DR 0.065 . LmjF.35.3450 509 AEDTKDR|EE 0.073 . LmjF.35.3450 513 KDREELK|SK 0.066 . LmjF.35.3450 515 REELKSK|KL 0.064 . LmjF.35.3450 516 EELKSKK|LP 0.075 . LmjF.35.3450 531 EVWSAER|ES 0.064 . LmjF.35.3450 566 AVDATPR|YI 0.112 . LmjF.35.3450 570 TPRYISK|YS 0.076 . LmjF.35.3450 579 TAYAYGR|RL 0.118 . LmjF.35.3450 580 AYAYGRR|LG 0.093 . LmjF.35.3450 585 RRLGTCR|QH 0.082 . LmjF.35.3450 588 GTCRQHR|FL 0.320 . LmjF.35.3450 592 QHRFLWR|DE 0.107 . LmjF.35.3450 601 LAWDDTR|EL 0.098 . LmjF.35.3450 608 ELSEVLR|AT 0.104 . LmjF.35.3450 624 TSSLAQR|QQ 0.124 . LmjF.35.3450 628 AQRQQQR|ES 0.097 . LmjF.35.3450 631 QQQRESR|QL 0.267 . LmjF.35.3450 651 TLNALHR|HP 0.107 . LmjF.35.3450 663 TDSDLAR|HE 0.136 . LmjF.35.3450 670 HEGVYPK|DA 0.095 . LmjF.35.3450 680 TTVGSVK|GR 0.064 . LmjF.35.3450 682 VGSVKGR|LV 0.143 . LmjF.35.3450 686 KGRLVYK|RS 0.062 . LmjF.35.3450 687 GRLVYKR|SA 0.493 . LmjF.35.3450 694 SAVVSLR|SR 0.145 . LmjF.35.3450 696 VVSLRSR|DG 0.087 . LmjF.35.3450 701 SRDGWLR|EG 0.081 . LmjF.35.3450 704 GWLREGR|SL 0.341 . LmjF.35.3450 715 EDQPAYK|VV 0.062 . LmjF.35.3450 723 VAPPASR|PF 0.062 . LmjF.35.3450 734 PSTLYGR|WQ 0.074 . LmjF.35.3450 758 SIPHHGR|TS 0.118 . LmjF.35.3450 767 WYILLDK|AP 0.062 . LmjF.35.3450 783 TQPQISR|VA 0.088 . LmjF.35.3450 786 QISRVAR|RM 0.256 . LmjF.35.3450 787 ISRVARR|MK 0.167 . LmjF.35.3450 789 RVARRMK|LD 0.109 . LmjF.35.3450 801 AVVGFER|RR 0.072 . LmjF.35.3450 802 VVGFERR|RT 0.146 . LmjF.35.3450 803 VGFERRR|TD 0.111 . LmjF.35.3450 808 RRTDEHR|RG 0.091 . LmjF.35.3450 809 RTDEHRR|GH 0.120 . LmjF.35.3450 822 INGIVVK|ET 0.072 . LmjF.35.3450 847 QEQEATK|RR 0.062 . LmjF.35.3450 848 EQEATKR|RQ 0.127 . LmjF.35.3450 849 QEATKRR|QR 0.116 . LmjF.35.3450 851 ATKRRQR|AF 0.271 . LmjF.35.3450 862 WLLLAQR|LL 0.070 . LmjF.35.3450 867 QRLLALK|RL 0.058 . LmjF.35.3450 868 RLLALKR|LQ 0.170 . LmjF.35.3450 875 LQDQYAK|GL 0.081 . ____________________________^_________________

  • Fasta :-

    >LmjF.35.3450 ATGAGCTCCAACACCCGAAGGGCTGCAACGTCGGTCGCCTCAGCGGCGACTGCTACTGTG GATGGGTATCTGCGCAATATGTCAAAGCGGCTGCGCATTCCGACCGCCGAAGGCGGCCGC GGTACACGACGAAAAATGGCCATGGTGACATCCGCCAGCGTACCCGCTGATCCAGCCGAG ACGCGTAACGTCACGGAGAAGGACCAGAGCAACTTGGCCGCCGATGTGGACGAGTGGGAT GAAGTGGAGCTTCCAGTCGCCTTTTCTCCTGCCAAGAAGCAGGAAGAAAGCGAGAGCGGC AGCTTAGTCAAGAAGGGTCTGACCGATGACGGCGAAGGTGAGGCCGTGAAGCATGAGACC GCTTACGCGGTTTCAACTGTCAAGACAGAAGTAACGACTACGACAACGGGTGAGGCAGAT ACTGTAACATCGGGTGGCGTGAAGGAGGAACTGGTGAGTGTGGACACGGAGGCGGCTGCG AGCGATCGACCCCTGATGGAGTGGGCGCAACTGCCGCTTGTGGGACGGCCACGCGCTTCA GATACATGGCGGCAGCGTGACCCAGCTTATGAGGCCATGATGGAGCAGAGGGATTTGCTA GCCGCAAAGCGTCGCTCGGAGCGCATTCAGCGCGTCTGTGAGTCGCTCTTCGCACTCCTG GCTGTGCTCATTCGAGCCCGTCTGCTCTGGCGTGAGTCGTGTCATCCCGGTTTCGTTAAA CAGCTTCTCCGGCTCCATGTGTCGCGCGGAAGGGGCCCGAAACGCTCACGCTGCGAAGAT CCTTCTGGAAAGGCAACAAGTGCTTACGTTTTTCTCAAAGCAGTAGCCACCGCAAAGGTG CTGGTGGCGGAGTCGACAAAGCCGTCGCATCGCAAGCCCTCGCTCGCCCCAGCGTGGGTG ACGTGCGCAAAAGACGCGGTGCAGAACAAAACCTCGGCGGCCGTGAAAGTACTCATTGAA ACAATCAACGACTACTTCAAGTTAGAGGCACTGGCGGCTCCAGCTTCGTCGAGTGGACGC GAGGCACCTGTTGGTGCCGCGGCGTATACTGTTGCTCCGTCGTCTGCCGAGCAAGACTTT TCCGACTGGTCGATGCCTGTCAAACCAGGGTTTCTCTTCACGAAGACAGCAGAGCGTCAT TGCCGTGTCTCTGCGGATGCGCCACTCGAGTTGCCTCATCCCCTTTACTTCTCCCTTGTG TTTCTGGCATTGGCGCGCGTGGCGGGACTGAGCTGCCGTCTTGTGGTGGCGAAGCTGGGA AAGACGCAGCTGGAGAAGGCTCGTGCAGCGGGGCCTGCCGGCGACACTGCCAATGGGTAC AACGACACAAGTGAGGGCAAGGACAACACCGCGGACGGTGAGAGCGAAGATAGCACTCGC CGGCCGCTGCGAGTTCTTTCCATTTTTGAAGGCCGCGAGAAGCGCAAGGCATCGGATCGC ACCGACGCCAGTGGGGTTGCTCGAGCGGGCAAGGGGTCGAAGAGGCAGCGACCATCAGCA GGGTTGGCAGAAGACACCAAAGACCGTGAGGAGCTCAAGTCAAAAAAGCTGCCCACTTCA TGCTACTGGGTGGAGGTGTGGTCCGCGGAGCGCGAGAGCTTCCTTTCTGTCAACCCGTGC CAAAGCTGCGCCACCCTTTGGGGTGCATCATACACGCTGTCAGTCTCTGGTCACGTGGCG GTGGACGCGACGCCGCGGTACATCTCCAAGTACAGCACCGCATACGCCTACGGTCGTCGC CTCGGCACCTGTCGGCAGCACCGATTCTTGTGGCGCGACGAACTCGCCTGGGATGATACC CGTGAGCTGTCTGAAGTGCTGCGTGCCACCTTCAACGTGGCTGCCCCACACACGAGCTCG CTGGCGCAGCGGCAGCAGCAGCGGGAGAGCCGGCAGCTACACTCCCTCATGTACTCGGAG GCCGTGCCCACAACGCTGAATGCTCTTCACCGCCACCCACTCTATGTGACAGACTCCGAC CTTGCGCGGCATGAGGGGGTATACCCAAAGGATGCAAACACGACCGTGGGAAGCGTGAAG GGTCGCTTGGTCTACAAGCGTTCCGCGGTCGTGAGTCTGCGGTCTCGCGACGGGTGGTTG CGCGAGGGGCGCAGCCTGCTCACGGAGGACCAGCCAGCGTACAAGGTTGTGGCGCCACCC GCCTCTCGCCCGTTTGCGGCACCGTCAACACTCTACGGTCGTTGGCAAACACAGCCATTC GAGCCACTGCCACTCACTGCAGGCGATCCTCCGAGCATTCCACATCACGGGCGGACGTCG TGGTACATCTTACTCGACAAAGCCCCGCCACAGGGAATTGTGCACCTGACCCAGCCCCAG ATATCTCGCGTGGCGCGCCGCATGAAGCTAGACTTCTGCTTGGCTGTGGTTGGCTTTGAG CGGCGCCGCACCGACGAGCATCGCCGCGGGCATTGGGAGACCGTCATCAATGGCATTGTT GTCAAGGAAACGGACAGCGTCGCACTCCTTCACGCCTACGAGGAGTGGGTGCAACTAGTG CAGGAGCAGGAAGCGACGAAGCGAAGACAGCGTGCGTTTCACTGGTGGCTTTTGCTTGCG CAGCGTCTTCTGGCGTTAAAACGGCTGCAGGATCAGTACGCCAAGGGACTCGGCGCTGGC TCGATGCCAATGCAATGA
  • Download Fasta

  • Fasta :-

    MSSNTRRAATSVASAATATVDGYLRNMSKRLRIPTAEGGRGTRRKMAMVTSASVPADPAE TRNVTEKDQSNLAADVDEWDEVELPVAFSPAKKQEESESGSLVKKGLTDDGEGEAVKHET AYAVSTVKTEVTTTTTGEADTVTSGGVKEELVSVDTEAAASDRPLMEWAQLPLVGRPRAS DTWRQRDPAYEAMMEQRDLLAAKRRSERIQRVCESLFALLAVLIRARLLWRESCHPGFVK QLLRLHVSRGRGPKRSRCEDPSGKATSAYVFLKAVATAKVLVAESTKPSHRKPSLAPAWV TCAKDAVQNKTSAAVKVLIETINDYFKLEALAAPASSSGREAPVGAAAYTVAPSSAEQDF SDWSMPVKPGFLFTKTAERHCRVSADAPLELPHPLYFSLVFLALARVAGLSCRLVVAKLG KTQLEKARAAGPAGDTANGYNDTSEGKDNTADGESEDSTRRPLRVLSIFEGREKRKASDR TDASGVARAGKGSKRQRPSAGLAEDTKDREELKSKKLPTSCYWVEVWSAERESFLSVNPC QSCATLWGASYTLSVSGHVAVDATPRYISKYSTAYAYGRRLGTCRQHRFLWRDELAWDDT RELSEVLRATFNVAAPHTSSLAQRQQQRESRQLHSLMYSEAVPTTLNALHRHPLYVTDSD LARHEGVYPKDANTTVGSVKGRLVYKRSAVVSLRSRDGWLREGRSLLTEDQPAYKVVAPP ASRPFAAPSTLYGRWQTQPFEPLPLTAGDPPSIPHHGRTSWYILLDKAPPQGIVHLTQPQ ISRVARRMKLDFCLAVVGFERRRTDEHRRGHWETVINGIVVKETDSVALLHAYEEWVQLV QEQEATKRRQRAFHWWLLLAQRLLALKRLQDQYAKGLGAGSMPMQ

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.35.3450262 SCEDPSGKAT0.994unspLmjF.35.3450262 SCEDPSGKAT0.994unspLmjF.35.3450262 SCEDPSGKAT0.994unspLmjF.35.3450338 SPASSSGREA0.995unspLmjF.35.3450355 SVAPSSAEQD0.993unspLmjF.35.3450458 SESEDSTRRP0.995unspLmjF.35.3450467 SLRVLSIFEG0.992unspLmjF.35.3450478 SKRKASDRTD0.993unspLmjF.35.3450569 SPRYISKYST0.994unspLmjF.35.3450206 SAKRRSERIQ0.996unspLmjF.35.3450256 SGPKRSRCED0.993unsp

LmjF.35.3450      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India