LmjF.35.4850 | proteasome alpha 1 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.35.4850OTHER0.9998030.0001300.000067
No Results

  • Fasta :-

    >LmjF.35.4850 MNRAGFDKYITVFSPEGSLYQVEYAFKAVTYPGLLTVAIRCKDAVLVATQHVIPDRLMRP DSVTMLYEVTPGIGCCMTGRAPDGRALVQRAREEASDYHYRYGVQIPIAVLAKRMGDKAQ VRTQQAGLRPMGVVSTFIGMDQSDQDGALKPQIYTVDPAGWTCGHIACAVGKKQVEAMAF LEKRQKSTEFAELTQKEAAMIALAALQSAIGTAVKAKEVEVGRCTAANPAFQRVPNSEVE EWLTAVAEAD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/716 Sequence name : 716 Sequence length : 250 VALUES OF COMPUTED PARAMETERS Coef20 : 3.558 CoefTot : -0.108 ChDiff : 0 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.629 1.759 0.239 0.616 MesoH : -0.455 0.405 -0.260 0.210 MuHd_075 : 31.812 11.730 8.215 5.562 MuHd_095 : 20.263 9.576 4.095 5.424 MuHd_100 : 7.222 4.953 1.240 3.410 MuHd_105 : 6.922 3.521 1.223 1.272 Hmax_075 : 14.233 7.583 1.353 4.422 Hmax_095 : 9.100 5.600 -0.081 4.270 Hmax_100 : 0.800 1.400 -2.246 3.020 Hmax_105 : -0.800 1.983 -1.226 2.720 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9319 0.0681 DFMC : 0.9219 0.0781
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 250 LmjF.35.4850 MNRAGFDKYITVFSPEGSLYQVEYAFKAVTYPGLLTVAIRCKDAVLVATQHVIPDRLMRPDSVTMLYEVTPGIGCCMTGR 80 APDGRALVQRAREEASDYHYRYGVQIPIAVLAKRMGDKAQVRTQQAGLRPMGVVSTFIGMDQSDQDGALKPQIYTVDPAG 160 WTCGHIACAVGKKQVEAMAFLEKRQKSTEFAELTQKEAAMIALAALQSAIGTAVKAKEVEVGRCTAANPAFQRVPNSEVE 240 EWLTAVAEAD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.35.4850 3 ----MNR|AG 0.096 . LmjF.35.4850 8 NRAGFDK|YI 0.082 . LmjF.35.4850 27 QVEYAFK|AV 0.066 . LmjF.35.4850 40 LLTVAIR|CK 0.109 . LmjF.35.4850 42 TVAIRCK|DA 0.084 . LmjF.35.4850 56 QHVIPDR|LM 0.080 . LmjF.35.4850 59 IPDRLMR|PD 0.241 . LmjF.35.4850 80 GCCMTGR|AP 0.080 . LmjF.35.4850 85 GRAPDGR|AL 0.121 . LmjF.35.4850 90 GRALVQR|AR 0.134 . LmjF.35.4850 92 ALVQRAR|EE 0.072 . LmjF.35.4850 101 ASDYHYR|YG 0.108 . LmjF.35.4850 113 PIAVLAK|RM 0.070 . LmjF.35.4850 114 IAVLAKR|MG 0.218 . LmjF.35.4850 118 AKRMGDK|AQ 0.063 . LmjF.35.4850 122 GDKAQVR|TQ 0.103 . LmjF.35.4850 129 TQQAGLR|PM 0.095 . LmjF.35.4850 150 DQDGALK|PQ 0.054 . LmjF.35.4850 172 IACAVGK|KQ 0.065 . LmjF.35.4850 173 ACAVGKK|QV 0.172 . LmjF.35.4850 183 AMAFLEK|RQ 0.059 . LmjF.35.4850 184 MAFLEKR|QK 0.247 . LmjF.35.4850 186 FLEKRQK|ST 0.098 . LmjF.35.4850 196 FAELTQK|EA 0.058 . LmjF.35.4850 215 AIGTAVK|AK 0.063 . LmjF.35.4850 217 GTAVKAK|EV 0.164 . LmjF.35.4850 223 KEVEVGR|CT 0.092 . LmjF.35.4850 233 ANPAFQR|VP 0.076 . ____________________________^_________________

  • Fasta :-

    >LmjF.35.4850 ATGAACCGCGCAGGCTTCGACAAGTACATTACCGTCTTCAGCCCTGAGGGCTCGCTGTAC CAGGTGGAGTACGCATTCAAAGCGGTCACCTACCCTGGCCTGCTCACCGTTGCCATTCGA TGCAAGGATGCCGTTCTGGTCGCGACGCAGCACGTGATTCCCGACCGCCTCATGCGCCCT GACTCGGTGACGATGCTCTACGAGGTCACTCCGGGCATCGGCTGCTGCATGACCGGTCGC GCTCCCGACGGGCGCGCGCTAGTGCAGCGCGCGCGAGAGGAAGCGTCGGATTACCACTAC CGCTACGGTGTGCAGATTCCAATCGCGGTGTTGGCGAAGCGCATGGGCGACAAGGCGCAG GTGCGCACGCAGCAGGCCGGCCTGCGGCCGATGGGTGTGGTGAGCACCTTCATCGGCATG GATCAGAGTGACCAGGACGGCGCGCTGAAGCCGCAGATTTACACCGTCGACCCGGCTGGT TGGACCTGCGGGCACATTGCATGCGCTGTTGGCAAGAAGCAGGTGGAGGCGATGGCATTC TTGGAGAAGCGCCAGAAGAGCACCGAGTTTGCCGAGCTGACACAGAAGGAGGCCGCGATG ATCGCGCTGGCGGCGCTGCAGAGCGCGATCGGCACGGCTGTCAAAGCGAAAGAGGTGGAG GTGGGCCGCTGCACAGCCGCGAACCCGGCCTTTCAGCGTGTGCCGAATAGCGAGGTCGAG GAGTGGCTGACCGCCGTGGCCGAGGCGGATTAA
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  • Fasta :-

    MNRAGFDKYITVFSPEGSLYQVEYAFKAVTYPGLLTVAIRCKDAVLVATQHVIPDRLMRP DSVTMLYEVTPGIGCCMTGRAPDGRALVQRAREEASDYHYRYGVQIPIAVLAKRMGDKAQ VRTQQAGLRPMGVVSTFIGMDQSDQDGALKPQIYTVDPAGWTCGHIACAVGKKQVEAMAF LEKRQKSTEFAELTQKEAAMIALAALQSAIGTAVKAKEVEVGRCTAANPAFQRVPNSEVE EWLTAVAEAD

  • title: active site
  • coordinates: L34,Q50,V52,M65,K172
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.35.4850187 SKRQKSTEFA0.998unspLmjF.35.4850194 TFAELTQKEA0.99unsp

LmjF.35.4850      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India