LmjF.36.2710 | mitochondrial ATP-dependent zinc metallopeptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.36.2710OTHER0.8238020.0142900.161908
No Results

  • Fasta :-

    >LmjF.36.2710 MQRYFRDATLVANRRTAVLRVHAGVLSQFRTTLIVAPEFLQRRTYYPAPGTYPPPPPPPP QSHYAQPLWTPYNAAYTAPPPPLPQGGMSYGQPQQQPLPSDLGTKERPIVVVSAPQKASW ATRFWMFLLFGIALSCFISLVEEFNDRFQEGQPANKSGFARSGISGLFGSVDVKPVNLDN LEVTFDSIRGCDEAKKELEEIVEFLKDPEKFYNLGGRLPKGALLTGPPGCGKTMLAKAIA KEAGVSFFYATGSEFDEMFVGVGARRVRELFAAAKANSPALIFIDEVDALGGRRSRSDHS TSRMTLNQLLAEMDGFDSDEAVIVLAATNTPETLDKALTRPGRLDTTITVDPPDMKGRAE VAQVYLDKIKTDSTVNAMDIARGTTGFTGAELSNLVNLAAIRAAVLNKAKVTSEEIEYAK DRVMMGAESKKIVPEEERRVTAFHEGGHALSAILLKDEGADPVHKATIVPRGNGIMGLVQ QQPDRDKYSQSKRQCLARLKVCVAGRVGEEILLGPDDITTGAGSDFQQATNMARHMVRQF GFSDAMGFVDYGTPDTAEGAYISDETKLKIEKEVHRLVEQAYIETKELLLSHRAELENIA NNLLKYETLSGKDLEKIIKGEAIPERPPRLSQAAESKAAPPRGGNSDQANGRRTVPIS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/83 Sequence name : 83 Sequence length : 658 VALUES OF COMPUTED PARAMETERS Coef20 : 5.123 CoefTot : -6.672 ChDiff : -4 ZoneTo : 100 KR : 8 DE : 2 CleavSite : 22 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.547 2.359 0.452 0.852 MesoH : -0.016 0.401 -0.299 0.243 MuHd_075 : 33.084 24.291 8.042 7.683 MuHd_095 : 43.844 20.042 8.099 7.437 MuHd_100 : 36.314 21.981 7.946 7.549 MuHd_105 : 39.178 20.578 9.294 8.403 Hmax_075 : 13.650 17.033 1.755 4.909 Hmax_095 : 12.000 18.900 1.032 3.240 Hmax_100 : 8.600 19.500 3.201 6.340 Hmax_105 : 2.600 14.100 0.277 3.240 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3924 0.6076 DFMC : 0.6112 0.3888
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 658 LmjF.36.2710 MQRYFRDATLVANRRTAVLRVHAGVLSQFRTTLIVAPEFLQRRTYYPAPGTYPPPPPPPPQSHYAQPLWTPYNAAYTAPP 80 PPLPQGGMSYGQPQQQPLPSDLGTKERPIVVVSAPQKASWATRFWMFLLFGIALSCFISLVEEFNDRFQEGQPANKSGFA 160 RSGISGLFGSVDVKPVNLDNLEVTFDSIRGCDEAKKELEEIVEFLKDPEKFYNLGGRLPKGALLTGPPGCGKTMLAKAIA 240 KEAGVSFFYATGSEFDEMFVGVGARRVRELFAAAKANSPALIFIDEVDALGGRRSRSDHSTSRMTLNQLLAEMDGFDSDE 320 AVIVLAATNTPETLDKALTRPGRLDTTITVDPPDMKGRAEVAQVYLDKIKTDSTVNAMDIARGTTGFTGAELSNLVNLAA 400 IRAAVLNKAKVTSEEIEYAKDRVMMGAESKKIVPEEERRVTAFHEGGHALSAILLKDEGADPVHKATIVPRGNGIMGLVQ 480 QQPDRDKYSQSKRQCLARLKVCVAGRVGEEILLGPDDITTGAGSDFQQATNMARHMVRQFGFSDAMGFVDYGTPDTAEGA 560 YISDETKLKIEKEVHRLVEQAYIETKELLLSHRAELENIANNLLKYETLSGKDLEKIIKGEAIPERPPRLSQAAESKAAP 640 PRGGNSDQANGRRTVPIS 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.36.2710 3 ----MQR|YF 0.103 . LmjF.36.2710 6 -MQRYFR|DA 0.402 . LmjF.36.2710 14 ATLVANR|RT 0.072 . LmjF.36.2710 15 TLVANRR|TA 0.117 . LmjF.36.2710 20 RRTAVLR|VH 0.110 . LmjF.36.2710 30 GVLSQFR|TT 0.082 . LmjF.36.2710 42 APEFLQR|RT 0.080 . LmjF.36.2710 43 PEFLQRR|TY 0.134 . LmjF.36.2710 105 PSDLGTK|ER 0.057 . LmjF.36.2710 107 DLGTKER|PI 0.089 . LmjF.36.2710 117 VVSAPQK|AS 0.078 . LmjF.36.2710 123 KASWATR|FW 0.173 . LmjF.36.2710 147 VEEFNDR|FQ 0.092 . LmjF.36.2710 156 EGQPANK|SG 0.068 . LmjF.36.2710 161 NKSGFAR|SG 0.299 . LmjF.36.2710 174 FGSVDVK|PV 0.070 . LmjF.36.2710 189 VTFDSIR|GC 0.086 . LmjF.36.2710 195 RGCDEAK|KE 0.062 . LmjF.36.2710 196 GCDEAKK|EL 0.103 . LmjF.36.2710 206 EIVEFLK|DP 0.062 . LmjF.36.2710 210 FLKDPEK|FY 0.065 . LmjF.36.2710 217 FYNLGGR|LP 0.090 . LmjF.36.2710 220 LGGRLPK|GA 0.127 . LmjF.36.2710 232 GPPGCGK|TM 0.057 . LmjF.36.2710 237 GKTMLAK|AI 0.073 . LmjF.36.2710 241 LAKAIAK|EA 0.088 . LmjF.36.2710 265 FVGVGAR|RV 0.127 . LmjF.36.2710 266 VGVGARR|VR 0.081 . LmjF.36.2710 268 VGARRVR|EL 0.277 . LmjF.36.2710 275 ELFAAAK|AN 0.075 . LmjF.36.2710 293 VDALGGR|RS 0.068 . LmjF.36.2710 294 DALGGRR|SR 0.142 . LmjF.36.2710 296 LGGRRSR|SD 0.354 . LmjF.36.2710 303 SDHSTSR|MT 0.106 . LmjF.36.2710 336 TPETLDK|AL 0.068 . LmjF.36.2710 340 LDKALTR|PG 0.077 . LmjF.36.2710 343 ALTRPGR|LD 0.203 . LmjF.36.2710 356 VDPPDMK|GR 0.058 . LmjF.36.2710 358 PPDMKGR|AE 0.102 . LmjF.36.2710 368 AQVYLDK|IK 0.065 . LmjF.36.2710 370 VYLDKIK|TD 0.066 . LmjF.36.2710 382 NAMDIAR|GT 0.116 . LmjF.36.2710 402 VNLAAIR|AA 0.072 . LmjF.36.2710 408 RAAVLNK|AK 0.076 . LmjF.36.2710 410 AVLNKAK|VT 0.070 . LmjF.36.2710 420 EEIEYAK|DR 0.063 . LmjF.36.2710 422 IEYAKDR|VM 0.103 . LmjF.36.2710 430 MMGAESK|KI 0.068 . LmjF.36.2710 431 MGAESKK|IV 0.179 . LmjF.36.2710 438 IVPEEER|RV 0.089 . LmjF.36.2710 439 VPEEERR|VT 0.117 . LmjF.36.2710 456 LSAILLK|DE 0.081 . LmjF.36.2710 465 GADPVHK|AT 0.064 . LmjF.36.2710 471 KATIVPR|GN 0.132 . LmjF.36.2710 485 VQQQPDR|DK 0.093 . LmjF.36.2710 487 QQPDRDK|YS 0.065 . LmjF.36.2710 492 DKYSQSK|RQ 0.058 . LmjF.36.2710 493 KYSQSKR|QC 0.221 . LmjF.36.2710 498 KRQCLAR|LK 0.105 . LmjF.36.2710 500 QCLARLK|VC 0.058 . LmjF.36.2710 506 KVCVAGR|VG 0.094 . LmjF.36.2710 534 QATNMAR|HM 0.088 . LmjF.36.2710 538 MARHMVR|QF 0.138 . LmjF.36.2710 567 YISDETK|LK 0.068 . LmjF.36.2710 569 SDETKLK|IE 0.061 . LmjF.36.2710 572 TKLKIEK|EV 0.079 . LmjF.36.2710 576 IEKEVHR|LV 0.141 . LmjF.36.2710 586 QAYIETK|EL 0.059 . LmjF.36.2710 593 ELLLSHR|AE 0.071 . LmjF.36.2710 605 IANNLLK|YE 0.072 . LmjF.36.2710 612 YETLSGK|DL 0.090 . LmjF.36.2710 616 SGKDLEK|II 0.060 . LmjF.36.2710 619 DLEKIIK|GE 0.059 . LmjF.36.2710 626 GEAIPER|PP 0.097 . LmjF.36.2710 629 IPERPPR|LS 0.353 . LmjF.36.2710 637 SQAAESK|AA 0.079 . LmjF.36.2710 642 SKAAPPR|GG 0.108 . LmjF.36.2710 652 SDQANGR|RT 0.086 . LmjF.36.2710 653 DQANGRR|TV 0.190 . ____________________________^_________________

  • Fasta :-

    >LmjF.36.2710 ATGCAAAGGTATTTCAGGGACGCGACTTTGGTCGCCAACCGACGAACAGCAGTGCTTCGC GTGCATGCCGGAGTTCTATCCCAGTTTCGAACGACGCTGATTGTGGCGCCGGAGTTCCTG CAAAGGCGCACGTACTACCCCGCCCCTGGGACCTATCCTCCGCCACCGCCACCGCCGCCG CAATCACACTACGCGCAACCTCTGTGGACCCCGTATAATGCTGCGTATACGGCTCCTCCA CCACCCCTGCCACAAGGGGGTATGTCGTATGGGCAGCCACAACAGCAGCCACTCCCAAGT GATCTGGGGACCAAGGAAAGACCGATTGTGGTCGTGTCAGCACCGCAGAAGGCTTCCTGG GCCACCCGCTTCTGGATGTTCTTGCTCTTCGGGATTGCTCTTAGCTGCTTCATCAGCCTG GTCGAGGAGTTCAACGATCGCTTTCAGGAGGGCCAGCCCGCAAACAAGTCAGGATTTGCG CGCTCTGGCATATCTGGCCTGTTCGGCTCTGTCGACGTGAAGCCGGTGAATCTGGACAAC TTGGAGGTCACATTTGACAGCATCCGCGGATGCGATGAGGCGAAAAAAGAGCTGGAGGAG ATTGTTGAGTTTCTAAAGGACCCCGAGAAGTTCTACAATTTGGGTGGGCGGCTGCCAAAA GGAGCGCTGCTCACCGGTCCGCCAGGGTGCGGGAAAACCATGCTGGCAAAGGCGATTGCC AAAGAGGCTGGCGTGAGCTTTTTCTACGCCACCGGAAGCGAGTTCGATGAGATGTTTGTT GGCGTTGGCGCCCGCCGCGTTCGCGAACTTTTCGCGGCCGCAAAGGCCAACTCACCAGCT TTGATTTTCATCGACGAGGTAGACGCATTAGGCGGTCGCCGCTCTCGTTCTGACCACAGC ACCTCTCGCATGACGTTGAACCAGCTCCTGGCAGAGATGGACGGCTTCGACTCCGATGAG GCCGTTATTGTCCTCGCCGCCACGAACACCCCTGAAACGCTGGACAAGGCACTCACGCGC CCCGGTCGCCTGGACACCACCATCACCGTTGACCCTCCGGATATGAAAGGGCGCGCGGAG GTAGCTCAGGTGTACCTTGACAAAATCAAGACAGACAGCACGGTCAATGCAATGGATATC GCACGCGGAACAACTGGTTTCACAGGTGCCGAGCTTAGCAACTTGGTGAATCTGGCAGCC ATCAGGGCCGCGGTGCTGAACAAGGCGAAAGTGACCAGCGAAGAGATAGAGTACGCTAAG GACCGCGTCATGATGGGTGCCGAGAGCAAGAAGATTGTGCCGGAGGAGGAGCGTCGCGTG ACTGCGTTCCACGAGGGCGGCCACGCTTTGAGCGCTATCTTGCTGAAGGATGAGGGTGCC GATCCTGTCCACAAGGCAACCATTGTTCCCCGCGGCAACGGCATTATGGGACTCGTCCAG CAACAGCCGGACAGGGATAAGTACAGTCAAAGCAAGCGCCAGTGCCTGGCTCGCCTGAAG GTGTGTGTGGCGGGACGAGTCGGCGAAGAGATTCTTTTAGGCCCTGACGATATTACCACC GGCGCAGGCTCCGATTTTCAGCAGGCCACCAACATGGCCCGCCACATGGTGCGACAGTTC GGGTTCAGCGACGCTATGGGCTTCGTAGACTATGGTACACCCGACACCGCCGAAGGCGCC TACATTTCAGATGAGACGAAGCTCAAGATCGAAAAAGAGGTACATCGCCTCGTTGAGCAG GCCTACATCGAGACCAAGGAGCTTCTTCTGAGCCACCGCGCCGAGTTGGAGAATATCGCC AACAACCTGCTCAAGTATGAAACGCTCAGTGGCAAGGATCTTGAGAAGATTATAAAGGGC GAGGCTATCCCAGAGCGTCCTCCGCGCCTGTCACAGGCTGCAGAGAGCAAGGCCGCGCCG CCACGAGGCGGGAACAGCGACCAGGCAAACGGTCGGAGAACTGTTCCAATCTCATAG
  • Download Fasta

  • Fasta :-

    MQRYFRDATLVANRRTAVLRVHAGVLSQFRTTLIVAPEFLQRRTYYPAPGTYPPPPPPPP QSHYAQPLWTPYNAAYTAPPPPLPQGGMSYGQPQQQPLPSDLGTKERPIVVVSAPQKASW ATRFWMFLLFGIALSCFISLVEEFNDRFQEGQPANKSGFARSGISGLFGSVDVKPVNLDN LEVTFDSIRGCDEAKKELEEIVEFLKDPEKFYNLGGRLPKGALLTGPPGCGKTMLAKAIA KEAGVSFFYATGSEFDEMFVGVGARRVRELFAAAKANSPALIFIDEVDALGGRRSRSDHS TSRMTLNQLLAEMDGFDSDEAVIVLAATNTPETLDKALTRPGRLDTTITVDPPDMKGRAE VAQVYLDKIKTDSTVNAMDIARGTTGFTGAELSNLVNLAAIRAAVLNKAKVTSEEIEYAK DRVMMGAESKKIVPEEERRVTAFHEGGHALSAILLKDEGADPVHKATIVPRGNGIMGLVQ QQPDRDKYSQSKRQCLARLKVCVAGRVGEEILLGPDDITTGAGSDFQQATNMARHMVRQF GFSDAMGFVDYGTPDTAEGAYISDETKLKIEKEVHRLVEQAYIETKELLLSHRAELENIA NNLLKYETLSGKDLEKIIKGEAIPERPPRLSQAAESKAAPPRGGNSDQANGRRTVPIS

  • title: ATP binding site
  • coordinates: P227,P228,G229,C230,G231,K232,T233,M234,D285,N329
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.36.2710300 SRSDHSTSRM0.994unspLmjF.36.2710300 SRSDHSTSRM0.994unspLmjF.36.2710300 SRSDHSTSRM0.994unspLmjF.36.2710610 SYETLSGKDL0.998unspLmjF.36.2710295 SGGRRSRSDH0.996unspLmjF.36.2710297 SRRSRSDHST0.995unsp

LmjF.36.2710      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India