LmjF.36.4450 | mitochondrial intermediate peptidase, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004222      

  • Computed_GO_Functions:  metalloendopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.36.4450mTP0.0002120.0002220.999567CS pos: 28-29. GRF-AS. Pr: 0.7547
No Results

  • Fasta :-

    >LmjF.36.4450 MLRRLVSCASPLRLRGCGAAVVLGNGRFASTANASAAPPITTTKAPTYGTVPDIPNLNFL SSPDNLLNTVDGTVDVCEALLKEIPKAKTPQAKHDLIDSTSNVLCLLLDPCEFVRQIHPD ENYKRGASLAFQKGYEYMCEVNSRRDLYDVIKELDSQEGRKGLTPESVKNVVQLRRDMEN NGIHLPDAQRAKVTEMNIEKEELAMRFLTEQGSANPFGTLRYLLQCRYELAQLLGFESYA EQQLRGTMLENQENVWHFLCSIASKYRQQAEAEMNLIRKHVGEVRNRVNITDEYRARVAS SMRRDAEPENALEYFSVANCVRGIQCLCSEVFGVKLEEVPLNPEEVINNSVKKFHVYDEH KRFLGVIVLDMYTNEMKYCQAGHLTLQLGCVPHQEALATVGLRLPKRQYPVVVLTANVGA LKPAQRRPDGTYDDESTLMQPNEVTTVFHEFGHAMHTIFGQTQVQNLAGTRASIDYVETF SQLFEQFLSSHEFLKLWAHRINTREPISFDIVQKRNSAANMFKHLDMLDQVVLSAVDQAL HGPQPLTVYFPHGDQGHVGKRTLGDLGDYGRGGFNMARALIQVAKPVSVAEPTETGVLST LSFEHLSGYPGGYYGYLYSLSVARRIWTKKFERDPLNRDAGRELVEKVMCHGAACDPRET IEKYLGDNLTDIDIWA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/552 Sequence name : 552 Sequence length : 676 VALUES OF COMPUTED PARAMETERS Coef20 : 4.938 CoefTot : -0.051 ChDiff : -10 ZoneTo : 52 KR : 6 DE : 0 CleavSite : 29 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.771 1.059 0.126 0.431 MesoH : -0.275 0.288 -0.234 0.206 MuHd_075 : 26.275 15.017 6.595 5.778 MuHd_095 : 25.770 19.887 6.734 6.485 MuHd_100 : 19.389 16.630 4.866 5.468 MuHd_105 : 22.761 15.066 5.565 5.553 Hmax_075 : 13.125 19.600 6.810 4.069 Hmax_095 : 3.587 12.775 2.338 2.476 Hmax_100 : 16.400 17.200 4.369 5.330 Hmax_105 : 10.100 13.000 0.575 2.459 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0814 0.9186 DFMC : 0.0401 0.9599 This protein is probably imported in mitochondria. f(Ser) = 0.0769 f(Arg) = 0.0962 CMi = 0.37594 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 676 LmjF.36.4450 MLRRLVSCASPLRLRGCGAAVVLGNGRFASTANASAAPPITTTKAPTYGTVPDIPNLNFLSSPDNLLNTVDGTVDVCEAL 80 LKEIPKAKTPQAKHDLIDSTSNVLCLLLDPCEFVRQIHPDENYKRGASLAFQKGYEYMCEVNSRRDLYDVIKELDSQEGR 160 KGLTPESVKNVVQLRRDMENNGIHLPDAQRAKVTEMNIEKEELAMRFLTEQGSANPFGTLRYLLQCRYELAQLLGFESYA 240 EQQLRGTMLENQENVWHFLCSIASKYRQQAEAEMNLIRKHVGEVRNRVNITDEYRARVASSMRRDAEPENALEYFSVANC 320 VRGIQCLCSEVFGVKLEEVPLNPEEVINNSVKKFHVYDEHKRFLGVIVLDMYTNEMKYCQAGHLTLQLGCVPHQEALATV 400 GLRLPKRQYPVVVLTANVGALKPAQRRPDGTYDDESTLMQPNEVTTVFHEFGHAMHTIFGQTQVQNLAGTRASIDYVETF 480 SQLFEQFLSSHEFLKLWAHRINTREPISFDIVQKRNSAANMFKHLDMLDQVVLSAVDQALHGPQPLTVYFPHGDQGHVGK 560 RTLGDLGDYGRGGFNMARALIQVAKPVSVAEPTETGVLSTLSFEHLSGYPGGYYGYLYSLSVARRIWTKKFERDPLNRDA 640 GRELVEKVMCHGAACDPRETIEKYLGDNLTDIDIWA 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.36.4450 3 ----MLR|RL 0.068 . LmjF.36.4450 4 ---MLRR|LV 0.175 . LmjF.36.4450 13 SCASPLR|LR 0.081 . LmjF.36.4450 15 ASPLRLR|GC 0.101 . LmjF.36.4450 27 VVLGNGR|FA 0.109 . LmjF.36.4450 44 PPITTTK|AP 0.062 . LmjF.36.4450 82 VCEALLK|EI 0.059 . LmjF.36.4450 86 LLKEIPK|AK 0.072 . LmjF.36.4450 88 KEIPKAK|TP 0.069 . LmjF.36.4450 93 AKTPQAK|HD 0.064 . LmjF.36.4450 115 DPCEFVR|QI 0.120 . LmjF.36.4450 124 HPDENYK|RG 0.055 . LmjF.36.4450 125 PDENYKR|GA 0.260 . LmjF.36.4450 133 ASLAFQK|GY 0.066 . LmjF.36.4450 144 MCEVNSR|RD 0.068 . LmjF.36.4450 145 CEVNSRR|DL 0.225 . LmjF.36.4450 152 DLYDVIK|EL 0.073 . LmjF.36.4450 160 LDSQEGR|KG 0.083 . LmjF.36.4450 161 DSQEGRK|GL 0.090 . LmjF.36.4450 169 LTPESVK|NV 0.067 . LmjF.36.4450 175 KNVVQLR|RD 0.083 . LmjF.36.4450 176 NVVQLRR|DM 0.168 . LmjF.36.4450 190 HLPDAQR|AK 0.079 . LmjF.36.4450 192 PDAQRAK|VT 0.074 . LmjF.36.4450 200 TEMNIEK|EE 0.058 . LmjF.36.4450 206 KEELAMR|FL 0.102 . LmjF.36.4450 221 NPFGTLR|YL 0.091 . LmjF.36.4450 227 RYLLQCR|YE 0.085 . LmjF.36.4450 245 YAEQQLR|GT 0.091 . LmjF.36.4450 265 LCSIASK|YR 0.093 . LmjF.36.4450 267 SIASKYR|QQ 0.114 . LmjF.36.4450 278 AEMNLIR|KH 0.076 . LmjF.36.4450 279 EMNLIRK|HV 0.173 . LmjF.36.4450 285 KHVGEVR|NR 0.072 . LmjF.36.4450 287 VGEVRNR|VN 0.078 . LmjF.36.4450 295 NITDEYR|AR 0.069 . LmjF.36.4450 297 TDEYRAR|VA 0.127 . LmjF.36.4450 303 RVASSMR|RD 0.084 . LmjF.36.4450 304 VASSMRR|DA 0.341 . LmjF.36.4450 322 SVANCVR|GI 0.096 . LmjF.36.4450 335 SEVFGVK|LE 0.058 . LmjF.36.4450 352 VINNSVK|KF 0.070 . LmjF.36.4450 353 INNSVKK|FH 0.132 . LmjF.36.4450 361 HVYDEHK|RF 0.058 . LmjF.36.4450 362 VYDEHKR|FL 0.244 . LmjF.36.4450 377 MYTNEMK|YC 0.068 . LmjF.36.4450 403 LATVGLR|LP 0.070 . LmjF.36.4450 406 VGLRLPK|RQ 0.092 . LmjF.36.4450 407 GLRLPKR|QY 0.192 . LmjF.36.4450 422 ANVGALK|PA 0.063 . LmjF.36.4450 426 ALKPAQR|RP 0.085 . LmjF.36.4450 427 LKPAQRR|PD 0.163 . LmjF.36.4450 471 QNLAGTR|AS 0.091 . LmjF.36.4450 495 SSHEFLK|LW 0.071 . LmjF.36.4450 500 LKLWAHR|IN 0.094 . LmjF.36.4450 504 AHRINTR|EP 0.073 . LmjF.36.4450 514 SFDIVQK|RN 0.069 . LmjF.36.4450 515 FDIVQKR|NS 0.194 . LmjF.36.4450 523 SAANMFK|HL 0.075 . LmjF.36.4450 560 DQGHVGK|RT 0.070 . LmjF.36.4450 561 QGHVGKR|TL 0.268 . LmjF.36.4450 571 DLGDYGR|GG 0.081 . LmjF.36.4450 578 GGFNMAR|AL 0.107 . LmjF.36.4450 585 ALIQVAK|PV 0.144 . LmjF.36.4450 624 YSLSVAR|RI 0.090 . LmjF.36.4450 625 SLSVARR|IW 0.271 . LmjF.36.4450 629 ARRIWTK|KF 0.069 . LmjF.36.4450 630 RRIWTKK|FE 0.128 . LmjF.36.4450 633 WTKKFER|DP 0.077 . LmjF.36.4450 638 ERDPLNR|DA 0.177 . LmjF.36.4450 642 LNRDAGR|EL 0.105 . LmjF.36.4450 647 GRELVEK|VM 0.064 . LmjF.36.4450 658 GAACDPR|ET 0.106 . LmjF.36.4450 663 PRETIEK|YL 0.095 . ____________________________^_________________

  • Fasta :-

    >LmjF.36.4450 ATGCTTCGCCGACTTGTATCCTGCGCATCACCGCTGCGCTTGCGGGGCTGTGGTGCGGCT GTTGTCTTGGGCAATGGTCGTTTTGCTTCCACGGCGAACGCGTCGGCAGCACCGCCCATC ACCACCACCAAGGCGCCGACCTACGGTACTGTTCCCGATATCCCGAACCTGAACTTCCTT TCCAGCCCTGATAATCTGCTTAACACCGTGGATGGAACGGTGGACGTGTGCGAGGCGTTG CTGAAGGAGATTCCAAAAGCCAAGACGCCGCAGGCCAAGCATGACCTAATCGATTCCACC AGCAACGTGCTCTGCCTGCTGCTGGACCCGTGCGAGTTTGTGCGTCAAATCCACCCAGAC GAGAACTACAAGCGTGGTGCCTCCCTCGCCTTCCAGAAGGGGTACGAGTACATGTGCGAG GTGAACTCGCGGCGCGACCTCTACGACGTCATTAAGGAGCTAGATAGCCAGGAAGGCCGC AAAGGCCTGACGCCGGAGTCGGTCAAGAACGTTGTGCAGCTGAGGAGGGACATGGAGAAC AACGGCATCCATCTTCCAGACGCGCAGCGCGCCAAGGTGACGGAGATGAACATCGAGAAG GAAGAACTGGCGATGCGCTTTTTGACGGAGCAGGGCTCAGCCAACCCTTTCGGCACTCTC CGGTACCTTCTTCAGTGCCGCTACGAGCTGGCTCAGTTGCTGGGGTTCGAGAGTTACGCA GAGCAACAGCTGCGCGGGACGATGCTGGAGAATCAGGAGAACGTATGGCACTTCCTTTGT AGCATTGCCAGCAAATATCGTCAGCAGGCGGAGGCGGAGATGAACCTCATTCGTAAACAC GTCGGCGAGGTGCGCAACCGTGTCAACATCACCGACGAATACAGAGCCCGCGTAGCGTCC TCGATGCGGCGCGATGCAGAGCCGGAGAATGCGCTGGAATACTTCTCCGTCGCGAACTGC GTGCGCGGCATTCAGTGTCTCTGCTCGGAGGTTTTCGGCGTGAAGCTGGAGGAGGTCCCC CTCAACCCCGAAGAGGTTATCAACAACAGTGTCAAGAAGTTTCACGTGTACGATGAGCAC AAGAGGTTCCTCGGCGTGATTGTGCTGGACATGTACACGAACGAGATGAAGTACTGCCAG GCAGGTCACTTGACGCTGCAACTCGGCTGCGTGCCGCACCAGGAGGCCCTCGCCACGGTG GGGCTGCGCTTACCGAAGCGGCAGTACCCGGTAGTTGTGCTCACGGCAAATGTGGGCGCG CTGAAGCCGGCACAGCGCCGCCCTGATGGCACATACGACGACGAATCCACCCTAATGCAG CCGAACGAGGTGACGACTGTTTTCCATGAGTTTGGCCACGCCATGCATACCATCTTTGGA CAGACCCAGGTGCAAAACTTGGCCGGCACGCGCGCCAGCATCGACTACGTCGAGACGTTC TCGCAGCTGTTTGAGCAGTTCCTCTCGTCGCACGAGTTCTTGAAGCTGTGGGCGCACCGC ATCAACACCCGTGAGCCGATCTCCTTCGACATTGTGCAGAAGCGCAACAGCGCGGCGAAC ATGTTCAAGCACCTGGATATGCTGGACCAGGTGGTGCTCTCTGCGGTGGACCAGGCGCTG CACGGGCCGCAGCCGTTAACGGTGTACTTCCCGCACGGCGACCAGGGTCACGTGGGCAAG CGCACGCTCGGTGACCTGGGCGATTACGGCCGCGGTGGCTTCAACATGGCACGGGCGCTC ATTCAGGTGGCGAAGCCGGTCTCCGTCGCGGAGCCGACGGAAACCGGCGTCCTGAGTACG CTATCCTTTGAGCACCTTTCAGGATACCCGGGAGGCTACTACGGCTATCTCTACAGCCTG AGCGTGGCGCGTCGAATCTGGACGAAAAAGTTCGAGCGCGACCCGCTCAACCGCGATGCC GGGCGTGAGCTGGTAGAAAAAGTCATGTGCCACGGCGCCGCCTGTGACCCACGCGAAACC ATCGAGAAATACCTCGGCGACAACCTCACAGATATTGATATTTGGGCCTAA
  • Download Fasta

  • Fasta :-

    MLRRLVSCASPLRLRGCGAAVVLGNGRFASTANASAAPPITTTKAPTYGTVPDIPNLNFL SSPDNLLNTVDGTVDVCEALLKEIPKAKTPQAKHDLIDSTSNVLCLLLDPCEFVRQIHPD ENYKRGASLAFQKGYEYMCEVNSRRDLYDVIKELDSQEGRKGLTPESVKNVVQLRRDMEN NGIHLPDAQRAKVTEMNIEKEELAMRFLTEQGSANPFGTLRYLLQCRYELAQLLGFESYA EQQLRGTMLENQENVWHFLCSIASKYRQQAEAEMNLIRKHVGEVRNRVNITDEYRARVAS SMRRDAEPENALEYFSVANCVRGIQCLCSEVFGVKLEEVPLNPEEVINNSVKKFHVYDEH KRFLGVIVLDMYTNEMKYCQAGHLTLQLGCVPHQEALATVGLRLPKRQYPVVVLTANVGA LKPAQRRPDGTYDDESTLMQPNEVTTVFHEFGHAMHTIFGQTQVQNLAGTRASIDYVETF SQLFEQFLSSHEFLKLWAHRINTREPISFDIVQKRNSAANMFKHLDMLDQVVLSAVDQAL HGPQPLTVYFPHGDQGHVGKRTLGDLGDYGRGGFNMARALIQVAKPVSVAEPTETGVLST LSFEHLSGYPGGYYGYLYSLSVARRIWTKKFERDPLNRDAGRELVEKVMCHGAACDPRET IEKYLGDNLTDIDIWA

  • title: Zn binding site
  • coordinates: H449,H453,E478
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.36.4450301 SRVASSMRRD0.992unspLmjF.36.4450301 SRVASSMRRD0.992unspLmjF.36.4450301 SRVASSMRRD0.992unspLmjF.36.4450534 SQVVLSAVDQ0.99unspLmjF.36.4450143 SCEVNSRRDL0.993unspLmjF.36.4450156 SKELDSQEGR0.993unsp

LmjF.36.4450      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India