LmjF.36.6020 | OTU-like cysteine protease, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0097014      GO:0005737      GO:0031981      

  • Curated_GO_Components:  ciliary plasm      cytoplasm      nuclear lumen      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.36.6020OTHER0.9995740.0000660.000361
No Results

  • Fasta :-

    >LmjF.36.6020 MSISVRIRTPKSSTPEQVELNSSGTWGEAAVLLSRKSEVALERLRVLAGFPPKAVDLAAD SPLSALKLRANDMLIVQEGEAKVQLGNTGERYVPPAPERAHLTRRRCPADNSCLFHACAY VLRDKSRTEGPQLRQECVQAVLDHPEMFNVNTLGMDPLAYASWLSQKDTWGGAIELEILS FLYKTEMFALDLQSVTVQRFGTGLGYTVRAFLVYTGNHYDCIAMNPVYNSASEREDQTLF SSRDENVLVRAKRFVAEEGQKMKEGKAT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/46 Sequence name : 46 Sequence length : 268 VALUES OF COMPUTED PARAMETERS Coef20 : 4.219 CoefTot : 0.099 ChDiff : -1 ZoneTo : 15 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.806 0.959 0.040 0.424 MesoH : -0.267 0.320 -0.328 0.257 MuHd_075 : 24.164 10.287 7.016 3.341 MuHd_095 : 7.695 8.438 2.613 2.696 MuHd_100 : 7.744 9.073 2.317 2.840 MuHd_105 : 7.879 6.911 1.203 2.148 Hmax_075 : 10.267 6.300 1.211 2.380 Hmax_095 : 1.600 6.200 -0.986 2.590 Hmax_100 : 1.600 6.200 -0.986 2.290 Hmax_105 : 4.317 2.800 -0.612 2.147 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8100 0.1900 DFMC : 0.7138 0.2862
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 268 LmjF.36.6020 MSISVRIRTPKSSTPEQVELNSSGTWGEAAVLLSRKSEVALERLRVLAGFPPKAVDLAADSPLSALKLRANDMLIVQEGE 80 AKVQLGNTGERYVPPAPERAHLTRRRCPADNSCLFHACAYVLRDKSRTEGPQLRQECVQAVLDHPEMFNVNTLGMDPLAY 160 ASWLSQKDTWGGAIELEILSFLYKTEMFALDLQSVTVQRFGTGLGYTVRAFLVYTGNHYDCIAMNPVYNSASEREDQTLF 240 SSRDENVLVRAKRFVAEEGQKMKEGKAT 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............P............... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.36.6020 6 -MSISVR|IR 0.095 . LmjF.36.6020 8 SISVRIR|TP 0.101 . LmjF.36.6020 11 VRIRTPK|SS 0.364 . LmjF.36.6020 35 AAVLLSR|KS 0.080 . LmjF.36.6020 36 AVLLSRK|SE 0.088 . LmjF.36.6020 43 SEVALER|LR 0.071 . LmjF.36.6020 45 VALERLR|VL 0.063 . LmjF.36.6020 53 LAGFPPK|AV 0.089 . LmjF.36.6020 67 SPLSALK|LR 0.055 . LmjF.36.6020 69 LSALKLR|AN 0.121 . LmjF.36.6020 82 VQEGEAK|VQ 0.055 . LmjF.36.6020 91 LGNTGER|YV 0.119 . LmjF.36.6020 99 VPPAPER|AH 0.076 . LmjF.36.6020 104 ERAHLTR|RR 0.112 . LmjF.36.6020 105 RAHLTRR|RC 0.115 . LmjF.36.6020 106 AHLTRRR|CP 0.102 . LmjF.36.6020 123 ACAYVLR|DK 0.121 . LmjF.36.6020 125 AYVLRDK|SR 0.066 . LmjF.36.6020 127 VLRDKSR|TE 0.167 . LmjF.36.6020 134 TEGPQLR|QE 0.085 . LmjF.36.6020 167 ASWLSQK|DT 0.083 . LmjF.36.6020 184 ILSFLYK|TE 0.072 . LmjF.36.6020 199 QSVTVQR|FG 0.107 . LmjF.36.6020 209 GLGYTVR|AF 0.084 . LmjF.36.6020 234 YNSASER|ED 0.107 . LmjF.36.6020 243 QTLFSSR|DE 0.091 . LmjF.36.6020 250 DENVLVR|AK 0.084 . LmjF.36.6020 252 NVLVRAK|RF 0.062 . LmjF.36.6020 253 VLVRAKR|FV 0.747 *ProP* LmjF.36.6020 261 VAEEGQK|MK 0.060 . LmjF.36.6020 263 EEGQKMK|EG 0.063 . LmjF.36.6020 266 QKMKEGK|AT 0.092 . ____________________________^_________________

  • Fasta :-

    >LmjF.36.6020 ATGTCCATCTCCGTGCGGATTCGTACACCGAAGAGCAGCACACCGGAGCAGGTGGAGCTG AACTCTAGCGGAACTTGGGGCGAGGCTGCCGTGCTGCTATCCCGGAAATCAGAGGTAGCA CTCGAGCGGCTGCGCGTGCTCGCCGGCTTCCCCCCAAAGGCGGTGGATCTGGCTGCCGAC AGCCCCCTTAGTGCACTCAAGCTGCGCGCTAATGACATGCTGATTGTTCAAGAGGGAGAA GCCAAGGTGCAGCTCGGTAACACAGGAGAGCGCTATGTTCCCCCGGCCCCTGAGCGGGCC CACCTCACGCGCCGTCGATGCCCGGCAGACAACAGCTGCCTCTTCCACGCCTGCGCCTAC GTGCTGCGCGACAAGAGCCGCACCGAGGGACCGCAGCTCCGGCAAGAGTGCGTGCAGGCC GTACTGGATCACCCCGAAATGTTCAACGTGAATACGCTGGGCATGGACCCCCTCGCCTAC GCCTCGTGGCTTTCGCAGAAGGACACGTGGGGTGGCGCCATTGAGCTGGAGATACTGTCC TTTTTGTACAAGACGGAGATGTTCGCTTTGGATCTGCAGTCGGTCACCGTGCAGCGCTTT GGCACAGGACTGGGTTACACCGTGCGCGCTTTTCTCGTGTACACGGGCAACCACTACGAC TGCATTGCCATGAATCCAGTGTACAACTCCGCCTCCGAGCGCGAGGATCAGACGCTGTTC AGCAGCCGTGACGAGAACGTCTTGGTACGGGCGAAGCGTTTCGTTGCCGAAGAAGGGCAG AAGATGAAGGAGGGCAAGGCCACATAG
  • Download Fasta

  • Fasta :-

    MSISVRIRTPKSSTPEQVELNSSGTWGEAAVLLSRKSEVALERLRVLAGFPPKAVDLAAD SPLSALKLRANDMLIVQEGEAKVQLGNTGERYVPPAPERAHLTRRRCPADNSCLFHACAY VLRDKSRTEGPQLRQECVQAVLDHPEMFNVNTLGMDPLAYASWLSQKDTWGGAIELEILS FLYKTEMFALDLQSVTVQRFGTGLGYTVRAFLVYTGNHYDCIAMNPVYNSASEREDQTLF SSRDENVLVRAKRFVAEEGQKMKEGKAT

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.36.6020165 SASWLSQKDT0.993unspLmjF.36.6020165 SASWLSQKDT0.993unspLmjF.36.6020165 SASWLSQKDT0.993unspLmjF.36.6020241 SQTLFSSRDE0.99unspLmjF.36.602013 STPKSSTPEQ0.995unspLmjF.36.6020126 SLRDKSRTEG0.997unsp

LmjF.36.6020      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India