LmxM.04.0850 | serine peptidase, Clan S-, family S54, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.04.0850OTHER0.9949890.0001720.004839
No Results

  • Fasta :-

    >LmxM.04.0850 MRCAMSSSSSSTSTSSSGLLTVRASAAAMHALHSGSLSVSSTLPTSLTALRTMRGAATIV VPVRASFFAGAAVSPMATACSSLFAAQRCYGVARATRVARSPKKSSEGSGQLQGVNNLER YKGEEEEEQKDGGGNEQENPFNMNSGPGYLPFPPPFHTINIVMILFLANVMCYLIMNLGS DDWRDFVVEHCTLSHENWARIYPLFTNAFYQENILQLLIDCWLLWQFGDTMLGFLGNTRM TFFALLCTLGGSVIHVARQKFELYYGMDELEVRGRCYGPNPFIMGLVAIEGLIFRHLNFI QQPPIPFLVLTAFVMVIDVWRIFTTKPEEHGAATGGALMAYLFWALPTRMLGLDKLTATL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/839 Sequence name : 839 Sequence length : 360 VALUES OF COMPUTED PARAMETERS Coef20 : 5.093 CoefTot : 4.421 ChDiff : -1 ZoneTo : 106 KR : 11 DE : 0 CleavSite : 56 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.947 2.376 0.330 0.776 MesoH : 0.784 0.873 -0.003 0.433 MuHd_075 : 24.057 13.120 5.960 5.041 MuHd_095 : 24.146 18.442 5.800 5.218 MuHd_100 : 34.733 17.310 7.704 7.627 MuHd_105 : 45.940 23.255 11.524 9.569 Hmax_075 : 16.000 16.400 2.128 2.430 Hmax_095 : 14.350 13.563 2.463 1.260 Hmax_100 : 9.800 18.700 1.566 3.860 Hmax_105 : 9.800 6.883 2.408 3.860 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0079 0.9921 DFMC : 0.0003 0.9997 This protein is probably imported in chloroplast. f(Ser) = 0.2264 f(Arg) = 0.0849 CMi = 1.19880 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 360 LmxM.04.0850 MRCAMSSSSSSTSTSSSGLLTVRASAAAMHALHSGSLSVSSTLPTSLTALRTMRGAATIVVPVRASFFAGAAVSPMATAC 80 SSLFAAQRCYGVARATRVARSPKKSSEGSGQLQGVNNLERYKGEEEEEQKDGGGNEQENPFNMNSGPGYLPFPPPFHTIN 160 IVMILFLANVMCYLIMNLGSDDWRDFVVEHCTLSHENWARIYPLFTNAFYQENILQLLIDCWLLWQFGDTMLGFLGNTRM 240 TFFALLCTLGGSVIHVARQKFELYYGMDELEVRGRCYGPNPFIMGLVAIEGLIFRHLNFIQQPPIPFLVLTAFVMVIDVW 320 RIFTTKPEEHGAATGGALMAYLFWALPTRMLGLDKLTATL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.04.0850 2 -----MR|CA 0.114 . LmxM.04.0850 23 SGLLTVR|AS 0.090 . LmxM.04.0850 51 TSLTALR|TM 0.077 . LmxM.04.0850 54 TALRTMR|GA 0.323 . LmxM.04.0850 64 TIVVPVR|AS 0.106 . LmxM.04.0850 88 SLFAAQR|CY 0.117 . LmxM.04.0850 94 RCYGVAR|AT 0.120 . LmxM.04.0850 97 GVARATR|VA 0.230 . LmxM.04.0850 100 RATRVAR|SP 0.485 . LmxM.04.0850 103 RVARSPK|KS 0.223 . LmxM.04.0850 104 VARSPKK|SS 0.205 . LmxM.04.0850 120 GVNNLER|YK 0.144 . LmxM.04.0850 122 NNLERYK|GE 0.065 . LmxM.04.0850 130 EEEEEQK|DG 0.072 . LmxM.04.0850 184 LGSDDWR|DF 0.118 . LmxM.04.0850 200 SHENWAR|IY 0.090 . LmxM.04.0850 239 GFLGNTR|MT 0.083 . LmxM.04.0850 258 SVIHVAR|QK 0.102 . LmxM.04.0850 260 IHVARQK|FE 0.065 . LmxM.04.0850 273 MDELEVR|GR 0.085 . LmxM.04.0850 275 ELEVRGR|CY 0.123 . LmxM.04.0850 295 IEGLIFR|HL 0.084 . LmxM.04.0850 321 MVIDVWR|IF 0.095 . LmxM.04.0850 326 WRIFTTK|PE 0.075 . LmxM.04.0850 349 FWALPTR|ML 0.093 . LmxM.04.0850 355 RMLGLDK|LT 0.058 . ____________________________^_________________

  • Fasta :-

    >LmxM.04.0850 ATGCGCTGCGCCATGAGCAGCAGCAGCAGCAGCACCAGCACTAGCAGCAGCGGCCTGCTC ACGGTGCGCGCCTCCGCAGCCGCCATGCACGCCCTCCATTCGGGATCGCTGTCTGTGTCG TCGACGCTTCCGACAAGCCTGACCGCCCTTCGCACGATGCGCGGCGCCGCTACCATTGTA GTCCCGGTGCGCGCCTCGTTCTTCGCCGGAGCCGCGGTCTCGCCGATGGCGACAGCGTGC TCGTCGCTCTTCGCTGCGCAGCGCTGCTACGGCGTCGCCAGAGCCACCCGCGTTGCGCGC TCCCCAAAGAAGAGCAGCGAAGGCAGCGGTCAGCTGCAGGGCGTCAACAACCTCGAGCGG TACAAGGGAGAGGAAGAGGAGGAGCAGAAGGATGGCGGTGGCAACGAGCAGGAGAACCCG TTCAACATGAACTCCGGCCCGGGCTACCTGCCCTTTCCCCCACCATTTCATACCATCAAC ATCGTCATGATCCTCTTCCTCGCCAACGTGATGTGCTACCTGATCATGAACCTCGGCAGC GACGACTGGCGCGACTTCGTGGTCGAGCACTGCACTCTCTCACACGAGAACTGGGCACGC ATCTACCCCCTCTTCACGAACGCCTTCTATCAAGAGAACATCCTCCAACTGCTCATTGAC TGCTGGCTGCTCTGGCAATTTGGCGACACGATGCTGGGCTTCCTCGGCAACACGCGCATG ACCTTCTTCGCGCTGCTCTGCACGCTCGGCGGCAGCGTCATCCATGTGGCGCGGCAGAAA TTTGAGCTGTACTATGGCATGGACGAGCTGGAGGTGCGTGGGCGCTGCTACGGGCCGAAC CCGTTCATCATGGGTCTCGTGGCGATCGAGGGGCTCATTTTCCGTCACCTGAACTTCATT CAGCAGCCGCCGATCCCCTTCCTCGTGCTGACGGCGTTCGTTATGGTGATCGACGTCTGG CGCATCTTCACAACGAAGCCGGAGGAGCACGGCGCGGCCACCGGCGGCGCCCTCATGGCG TACCTCTTCTGGGCCCTGCCGACCCGCATGCTGGGTCTCGACAAGCTCACGGCCACGCTT TAA
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  • Fasta :-

    MRCAMSSSSSSTSTSSSGLLTVRASAAAMHALHSGSLSVSSTLPTSLTALRTMRGAATIV VPVRASFFAGAAVSPMATACSSLFAAQRCYGVARATRVARSPKKSSEGSGQLQGVNNLER YKGEEEEEQKDGGGNEQENPFNMNSGPGYLPFPPPFHTINIVMILFLANVMCYLIMNLGS DDWRDFVVEHCTLSHENWARIYPLFTNAFYQENILQLLIDCWLLWQFGDTMLGFLGNTRM TFFALLCTLGGSVIHVARQKFELYYGMDELEVRGRCYGPNPFIMGLVAIEGLIFRHLNFI QQPPIPFLVLTAFVMVIDVWRIFTTKPEEHGAATGGALMAYLFWALPTRMLGLDKLTATL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.04.0850101 SRVARSPKKS0.998unspLmxM.04.0850101 SRVARSPKKS0.998unspLmxM.04.0850101 SRVARSPKKS0.998unspLmxM.04.0850105 SSPKKSSEGS0.995unspLmxM.04.085010 SSSSSSSTST0.99unspLmxM.04.085013 SSSSTSTSSS0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India