LmxM.07.0370 | Zinc finger, C3HC4 type (RING finger), putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0046872      GO:0005515      GO:0008270      

  • Computed_GO_Functions:  metal ion binding      protein binding      zinc ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.07.0370OTHER0.9999950.0000020.000003
No Results

  • Fasta :-

    >LmxM.07.0370 MRHSCRAHTPSPSHLLPRDFERAPSNTCGSGGGDLTVRLNSTTTRPRQRPHHHQQDPRRE RHFTDTQESNGSSSSSSRESVGGCIVPTWTNAPPNVVGGQVMMVNNSHRSLPPSCAAAAV NRPPGTSTSPTTQYKWREAAARPASGAAPSSPSAAVAFGAAPCTVTSGVAVSGTQRSDHS PTSTGERVAQMPLPGASSAAVTLQHDCPSRDSSGYPQGLSPTALRLHATASTAAGTATRG NLADPQRRRRLKPPPIMSDVASASGRRSCSCPSTRSATAIDATIASSPVAIYTGVAADPK AVAAMTRPARTLRSAGSPSNPNNMLPQGPVSLPNSDFKPLGLWCTSPASAAAASTSATTS ELEGSTVTVIGVDVGSLLTHEMDGGVVIVRPRQTPDDLVCGVCMSVCRQPTAAACGHLFC RRCLQSWMQENRTATCPLDRTPILVELLHTDARAQRQINALACRCPASLSRASQWALRQL GSASPVLGDRTEEDEGGDGDARREHPRCMWAGCVSDAAAHLRQCPYIIIECPFAKRGCSA AMARVDMAGHLKNSVADHLLLVSQALDASTEQYRVLQGEVEVLRQRCPMSYPVTLPNAPT GGPAGNSEPAVSMYSSSLHGMDVPTGALAPALLIPGGGSSNSGATPIAIAAFPEEVPPAS GSPTRVVGAFGHGASATVDYPFPVFSLLQPPYQHPHHSSLTTAVQTNVRRHAATDDMLLV AAHRVPSGHDATMPMAADTTALCTSSSPHIGAPPASVPVANTAAAAPTFALPAGAVGPIP AQLASAPPRAAPVVGSGRCVDRFVWVITEMASRQAPCYSRSFTSHGLPWYVGIDTTASRE QCGVYLFTEGHEHRVDFRVILYHEDPARDVVHVVRDWQDDYIGKGWGPLRFINRFTLEQD GFLVNGCLRVGIEVLSGPY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/16 Sequence name : 16 Sequence length : 919 VALUES OF COMPUTED PARAMETERS Coef20 : 3.861 CoefTot : -0.350 ChDiff : 7 ZoneTo : 18 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.700 1.559 0.355 0.612 MesoH : 0.632 0.607 -0.047 0.376 MuHd_075 : 16.293 16.333 7.133 3.252 MuHd_095 : 39.122 20.007 10.098 8.038 MuHd_100 : 24.361 16.574 7.579 4.970 MuHd_105 : 8.124 7.775 2.796 1.542 Hmax_075 : 7.233 3.150 -0.184 1.983 Hmax_095 : 8.400 6.400 0.429 2.670 Hmax_100 : 9.000 6.500 0.465 2.800 Hmax_105 : -3.600 3.850 -0.269 0.070 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5885 0.4115 DFMC : 0.6409 0.3591
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 919 LmxM.07.0370 MRHSCRAHTPSPSHLLPRDFERAPSNTCGSGGGDLTVRLNSTTTRPRQRPHHHQQDPRRERHFTDTQESNGSSSSSSRES 80 VGGCIVPTWTNAPPNVVGGQVMMVNNSHRSLPPSCAAAAVNRPPGTSTSPTTQYKWREAAARPASGAAPSSPSAAVAFGA 160 APCTVTSGVAVSGTQRSDHSPTSTGERVAQMPLPGASSAAVTLQHDCPSRDSSGYPQGLSPTALRLHATASTAAGTATRG 240 NLADPQRRRRLKPPPIMSDVASASGRRSCSCPSTRSATAIDATIASSPVAIYTGVAADPKAVAAMTRPARTLRSAGSPSN 320 PNNMLPQGPVSLPNSDFKPLGLWCTSPASAAAASTSATTSELEGSTVTVIGVDVGSLLTHEMDGGVVIVRPRQTPDDLVC 400 GVCMSVCRQPTAAACGHLFCRRCLQSWMQENRTATCPLDRTPILVELLHTDARAQRQINALACRCPASLSRASQWALRQL 480 GSASPVLGDRTEEDEGGDGDARREHPRCMWAGCVSDAAAHLRQCPYIIIECPFAKRGCSAAMARVDMAGHLKNSVADHLL 560 LVSQALDASTEQYRVLQGEVEVLRQRCPMSYPVTLPNAPTGGPAGNSEPAVSMYSSSLHGMDVPTGALAPALLIPGGGSS 640 NSGATPIAIAAFPEEVPPASGSPTRVVGAFGHGASATVDYPFPVFSLLQPPYQHPHHSSLTTAVQTNVRRHAATDDMLLV 720 AAHRVPSGHDATMPMAADTTALCTSSSPHIGAPPASVPVANTAAAAPTFALPAGAVGPIPAQLASAPPRAAPVVGSGRCV 800 DRFVWVITEMASRQAPCYSRSFTSHGLPWYVGIDTTASREQCGVYLFTEGHEHRVDFRVILYHEDPARDVVHVVRDWQDD 880 YIGKGWGPLRFINRFTLEQDGFLVNGCLRVGIEVLSGPY 960 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................................P....... 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................................................................................ 880 ....................................... 960 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.07.0370 2 -----MR|HS 0.101 . LmxM.07.0370 6 -MRHSCR|AH 0.119 . LmxM.07.0370 18 PSHLLPR|DF 0.161 . LmxM.07.0370 22 LPRDFER|AP 0.111 . LmxM.07.0370 38 GGDLTVR|LN 0.075 . LmxM.07.0370 45 LNSTTTR|PR 0.094 . LmxM.07.0370 47 STTTRPR|QR 0.075 . LmxM.07.0370 49 TTRPRQR|PH 0.119 . LmxM.07.0370 58 HHQQDPR|RE 0.089 . LmxM.07.0370 59 HQQDPRR|ER 0.141 . LmxM.07.0370 61 QDPRRER|HF 0.293 . LmxM.07.0370 78 SSSSSSR|ES 0.117 . LmxM.07.0370 109 MVNNSHR|SL 0.181 . LmxM.07.0370 122 AAAAVNR|PP 0.111 . LmxM.07.0370 135 SPTTQYK|WR 0.071 . LmxM.07.0370 137 TTQYKWR|EA 0.145 . LmxM.07.0370 142 WREAAAR|PA 0.189 . LmxM.07.0370 176 AVSGTQR|SD 0.124 . LmxM.07.0370 187 PTSTGER|VA 0.097 . LmxM.07.0370 210 QHDCPSR|DS 0.120 . LmxM.07.0370 225 LSPTALR|LH 0.073 . LmxM.07.0370 239 AAGTATR|GN 0.079 . LmxM.07.0370 247 NLADPQR|RR 0.074 . LmxM.07.0370 248 LADPQRR|RR 0.092 . LmxM.07.0370 249 ADPQRRR|RL 0.112 . LmxM.07.0370 250 DPQRRRR|LK 0.360 . LmxM.07.0370 252 QRRRRLK|PP 0.129 . LmxM.07.0370 266 VASASGR|RS 0.104 . LmxM.07.0370 267 ASASGRR|SC 0.160 . LmxM.07.0370 275 CSCPSTR|SA 0.230 . LmxM.07.0370 300 GVAADPK|AV 0.078 . LmxM.07.0370 307 AVAAMTR|PA 0.123 . LmxM.07.0370 310 AMTRPAR|TL 0.227 . LmxM.07.0370 313 RPARTLR|SA 0.550 *ProP* LmxM.07.0370 338 LPNSDFK|PL 0.076 . LmxM.07.0370 390 GGVVIVR|PR 0.072 . LmxM.07.0370 392 VVIVRPR|QT 0.091 . LmxM.07.0370 408 VCMSVCR|QP 0.093 . LmxM.07.0370 421 CGHLFCR|RC 0.091 . LmxM.07.0370 422 GHLFCRR|CL 0.107 . LmxM.07.0370 432 SWMQENR|TA 0.102 . LmxM.07.0370 440 ATCPLDR|TP 0.076 . LmxM.07.0370 453 LLHTDAR|AQ 0.103 . LmxM.07.0370 456 TDARAQR|QI 0.285 . LmxM.07.0370 464 INALACR|CP 0.075 . LmxM.07.0370 471 CPASLSR|AS 0.108 . LmxM.07.0370 478 ASQWALR|QL 0.107 . LmxM.07.0370 490 SPVLGDR|TE 0.093 . LmxM.07.0370 502 GGDGDAR|RE 0.071 . LmxM.07.0370 503 GDGDARR|EH 0.128 . LmxM.07.0370 507 ARREHPR|CM 0.153 . LmxM.07.0370 522 DAAAHLR|QC 0.094 . LmxM.07.0370 535 IECPFAK|RG 0.063 . LmxM.07.0370 536 ECPFAKR|GC 0.188 . LmxM.07.0370 544 CSAAMAR|VD 0.105 . LmxM.07.0370 552 DMAGHLK|NS 0.056 . LmxM.07.0370 574 ASTEQYR|VL 0.086 . LmxM.07.0370 584 GEVEVLR|QR 0.073 . LmxM.07.0370 586 VEVLRQR|CP 0.071 . LmxM.07.0370 665 ASGSPTR|VV 0.200 . LmxM.07.0370 709 AVQTNVR|RH 0.073 . LmxM.07.0370 710 VQTNVRR|HA 0.129 . LmxM.07.0370 724 LLVAAHR|VP 0.086 . LmxM.07.0370 789 LASAPPR|AA 0.162 . LmxM.07.0370 798 PVVGSGR|CV 0.118 . LmxM.07.0370 802 SGRCVDR|FV 0.208 . LmxM.07.0370 813 ITEMASR|QA 0.083 . LmxM.07.0370 820 QAPCYSR|SF 0.099 . LmxM.07.0370 839 IDTTASR|EQ 0.074 . LmxM.07.0370 854 TEGHEHR|VD 0.095 . LmxM.07.0370 858 EHRVDFR|VI 0.090 . LmxM.07.0370 868 YHEDPAR|DV 0.173 . LmxM.07.0370 875 DVVHVVR|DW 0.105 . LmxM.07.0370 884 QDDYIGK|GW 0.074 . LmxM.07.0370 890 KGWGPLR|FI 0.091 . LmxM.07.0370 894 PLRFINR|FT 0.111 . LmxM.07.0370 909 LVNGCLR|VG 0.082 . ____________________________^_________________

  • Fasta :-

    >LmxM.07.0370 ATGCGACACTCGTGTCGAGCGCACACGCCGTCTCCGTCGCACCTCTTACCACGGGACTTC GAACGTGCGCCCAGTAACACCTGCGGCAGCGGTGGCGGTGACCTCACTGTGCGACTGAAC TCGACTACGACGCGCCCGCGACAACGTCCGCACCACCACCAGCAGGACCCTCGCAGGGAG CGCCACTTCACAGACACACAGGAGAGTAACGGCAGTAGCAGCAGCTCGAGCCGTGAAAGC GTCGGCGGCTGTATCGTGCCGACGTGGACGAATGCGCCGCCGAATGTTGTGGGCGGCCAA GTGATGATGGTGAACAACTCCCACCGGAGCTTGCCGCCGTCGTGTGCTGCCGCGGCGGTG AATCGCCCGCCTGGGACCTCCACCTCTCCGACCACTCAGTACAAGTGGCGGGAGGCGGCT GCGCGTCCGGCGAGTGGAGCTGCCCCAAGCTCGCCTAGCGCGGCCGTCGCGTTCGGCGCA GCGCCGTGCACGGTGACAAGCGGTGTCGCTGTTTCTGGAACGCAACGTAGCGACCACAGC CCCACTAGCACTGGCGAAAGGGTAGCGCAGATGCCATTGCCGGGTGCATCCAGCGCGGCT GTAACACTGCAACACGACTGCCCATCGCGTGATTCGTCGGGGTATCCTCAGGGGCTATCC CCAACCGCCCTTCGCCTGCACGCGACTGCCTCAACAGCTGCCGGCACTGCCACCCGCGGC AACCTCGCTGATCCGCAGCGCCGCCGCAGGCTCAAGCCGCCGCCAATCATGAGCGACGTT GCCAGCGCCTCGGGTCGTCGCTCGTGCTCGTGCCCCAGTACTCGCAGTGCCACGGCGATC GATGCCACCATCGCGTCCTCTCCAGTTGCGATCTACACGGGGGTGGCAGCAGACCCGAAA GCGGTAGCGGCAATGACGCGCCCGGCTCGCACACTTCGAAGCGCTGGCAGTCCGTCGAAC CCAAACAATATGCTACCACAGGGGCCCGTGTCGCTCCCTAACTCCGACTTCAAGCCTCTT GGGCTGTGGTGCACCTCGCCTGCCTCCGCCGCCGCCGCCTCCACTTCAGCTACCACTTCA GAGCTCGAGGGGTCGACGGTAACGGTGATCGGCGTGGATGTCGGCAGCCTCCTCACACAC GAGATGGACGGCGGCGTGGTCATTGTACGCCCTCGCCAGACGCCGGACGATCTCGTGTGC GGTGTGTGTATGTCTGTGTGCCGGCAACCGACGGCAGCGGCGTGCGGGCATCTTTTCTGC CGTCGCTGCCTTCAGTCGTGGATGCAAGAAAACCGAACGGCAACATGCCCGCTGGACCGA ACCCCAATCCTGGTGGAGCTGCTGCACACCGACGCCCGCGCGCAGCGGCAGATCAACGCA CTGGCATGCCGCTGCCCCGCCTCGCTCTCTCGGGCATCGCAGTGGGCGTTGCGGCAGCTC GGGTCTGCAAGTCCTGTATTAGGCGACAGAACAGAGGAGGACGAGGGGGGCGATGGAGAC GCACGACGGGAGCACCCGCGATGTATGTGGGCGGGATGCGTGTCGGACGCTGCAGCGCAC TTGCGTCAGTGCCCGTACATCATCATCGAGTGCCCGTTCGCCAAGCGCGGCTGCTCGGCG GCGATGGCGCGGGTGGATATGGCGGGACACTTAAAGAATAGCGTGGCGGACCACCTGCTG CTTGTCTCGCAGGCCCTCGACGCGTCCACGGAGCAGTACCGGGTTTTGCAGGGGGAGGTG GAGGTGCTGCGACAGCGCTGTCCCATGAGTTATCCCGTCACCCTCCCCAATGCGCCAACA GGCGGGCCAGCCGGAAATTCGGAGCCGGCGGTGTCGATGTACTCGTCATCCTTGCATGGA ATGGATGTTCCGACGGGGGCGCTGGCACCGGCTCTCCTCATCCCCGGCGGCGGCAGCAGC AACAGCGGTGCAACTCCCATCGCGATAGCGGCGTTCCCGGAGGAAGTACCGCCAGCGAGC GGCTCCCCGACTCGAGTGGTGGGGGCGTTTGGCCACGGCGCATCCGCCACCGTCGACTAC CCGTTCCCTGTCTTCTCGCTGTTGCAGCCGCCATATCAGCACCCGCACCACAGCTCATTG ACGACAGCCGTGCAGACCAACGTGCGTCGGCACGCAGCTACTGATGATATGTTGCTTGTC GCCGCCCACCGCGTGCCCAGCGGACACGATGCCACAATGCCGATGGCGGCGGACACGACG GCGCTGTGCACCTCATCTTCACCGCACATTGGCGCTCCACCGGCCTCCGTCCCTGTTGCC AACACAGCAGCGGCGGCGCCGACCTTTGCCCTTCCTGCCGGCGCAGTAGGACCGATCCCT GCCCAACTCGCTAGCGCTCCTCCGCGAGCGGCGCCGGTGGTGGGCAGCGGCCGCTGCGTG GATCGATTTGTTTGGGTCATCACCGAGATGGCGTCGCGACAGGCGCCGTGCTACAGTCGC TCCTTTACCTCGCACGGCCTGCCATGGTATGTGGGCATTGACACCACCGCCTCACGGGAG CAGTGTGGAGTCTACCTCTTCACCGAGGGTCACGAGCACCGTGTCGACTTCCGCGTGATC CTGTACCACGAGGACCCGGCACGTGACGTTGTGCACGTTGTGCGGGACTGGCAGGATGAC TACATTGGAAAAGGCTGGGGCCCACTGCGCTTCATCAATCGTTTCACGCTAGAACAGGAC GGCTTCCTCGTGAACGGCTGCCTGCGCGTCGGGATCGAGGTGCTGAGTGGACCGTACTGA
  • Download Fasta

  • Fasta :-

    MRHSCRAHTPSPSHLLPRDFERAPSNTCGSGGGDLTVRLNSTTTRPRQRPHHHQQDPRRE RHFTDTQESNGSSSSSSRESVGGCIVPTWTNAPPNVVGGQVMMVNNSHRSLPPSCAAAAV NRPPGTSTSPTTQYKWREAAARPASGAAPSSPSAAVAFGAAPCTVTSGVAVSGTQRSDHS PTSTGERVAQMPLPGASSAAVTLQHDCPSRDSSGYPQGLSPTALRLHATASTAAGTATRG NLADPQRRRRLKPPPIMSDVASASGRRSCSCPSTRSATAIDATIASSPVAIYTGVAADPK AVAAMTRPARTLRSAGSPSNPNNMLPQGPVSLPNSDFKPLGLWCTSPASAAAASTSATTS ELEGSTVTVIGVDVGSLLTHEMDGGVVIVRPRQTPDDLVCGVCMSVCRQPTAAACGHLFC RRCLQSWMQENRTATCPLDRTPILVELLHTDARAQRQINALACRCPASLSRASQWALRQL GSASPVLGDRTEEDEGGDGDARREHPRCMWAGCVSDAAAHLRQCPYIIIECPFAKRGCSA AMARVDMAGHLKNSVADHLLLVSQALDASTEQYRVLQGEVEVLRQRCPMSYPVTLPNAPT GGPAGNSEPAVSMYSSSLHGMDVPTGALAPALLIPGGGSSNSGATPIAIAAFPEEVPPAS GSPTRVVGAFGHGASATVDYPFPVFSLLQPPYQHPHHSSLTTAVQTNVRRHAATDDMLLV AAHRVPSGHDATMPMAADTTALCTSSSPHIGAPPASVPVANTAAAAPTFALPAGAVGPIP AQLASAPPRAAPVVGSGRCVDRFVWVITEMASRQAPCYSRSFTSHGLPWYVGIDTTASRE QCGVYLFTEGHEHRVDFRVILYHEDPARDVVHVVRDWQDDYIGKGWGPLRFINRFTLEQD GFLVNGCLRVGIEVLSGPY

  • title: putative substrate binding site
  • coordinates: Y845,G885,W886,G887
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.07.0370180 SRSDHSPTST0.994unspLmxM.07.0370180 SRSDHSPTST0.994unspLmxM.07.0370180 SRSDHSPTST0.994unspLmxM.07.0370183 SHSPTSTGER0.995unspLmxM.07.0370213 SSRDSSGYPQ0.993unspLmxM.07.0370264 SVASASGRRS0.99unspLmxM.07.0370394 TRPRQTPDDL0.997unspLmxM.07.0370727 SHRVPSGHDA0.997unspLmxM.07.037076 SSSSSSSRES0.998unspLmxM.07.037080 SSSRESVGGC0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India