LmxM.07.1120 | proteasome regulatory non-ATP-ase subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.07.1120OTHER0.9998440.0001540.000002
No Results

  • Fasta :-

    >LmxM.07.1120 MVEACFLCLDSTEYMRNGDQYPTRMMAEQDAACLLANAKLQANAENTLGFLTTGGNACTV YETLTNNVDAIMTSIGSIPINGKRCNFSSGLQIASLALSHRTNSRAEKRIVAFVGSPIGE TAAELEALAKKLRKDDVAVDVVTFGVESNVELLQAFVKKVSKKENSRFLAVTARENLTDK LMSNAILLGEDLPEGAEGGGASMSGFGVDPNMDPELAMALRLSMEDEMQRQAAAAAAAAS SAAPESTPASGSAATPAAPPAPAAAPVVDEDELSYENMSEEEMMRRAIALSLQDTAQGAS ETVSQPSAPQPATTSEACRNEEENEDDFAKGVEDALEKEDEEKRS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/464 Sequence name : 464 Sequence length : 345 VALUES OF COMPUTED PARAMETERS Coef20 : 3.705 CoefTot : 0.000 ChDiff : -27 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.106 1.265 0.066 0.462 MesoH : -0.235 0.278 -0.277 0.200 MuHd_075 : 12.606 6.885 3.780 2.115 MuHd_095 : 14.524 6.016 5.308 1.887 MuHd_100 : 30.869 14.274 9.716 2.673 MuHd_105 : 41.456 19.263 12.539 4.712 Hmax_075 : 4.550 6.183 0.195 2.485 Hmax_095 : 3.400 7.300 1.806 2.210 Hmax_100 : 14.800 10.700 3.949 3.590 Hmax_105 : 17.400 16.100 5.145 4.010 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9879 0.0121 DFMC : 0.9605 0.0395
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 345 LmxM.07.1120 MVEACFLCLDSTEYMRNGDQYPTRMMAEQDAACLLANAKLQANAENTLGFLTTGGNACTVYETLTNNVDAIMTSIGSIPI 80 NGKRCNFSSGLQIASLALSHRTNSRAEKRIVAFVGSPIGETAAELEALAKKLRKDDVAVDVVTFGVESNVELLQAFVKKV 160 SKKENSRFLAVTARENLTDKLMSNAILLGEDLPEGAEGGGASMSGFGVDPNMDPELAMALRLSMEDEMQRQAAAAAAAAS 240 SAAPESTPASGSAATPAAPPAPAAAPVVDEDELSYENMSEEEMMRRAIALSLQDTAQGASETVSQPSAPQPATTSEACRN 320 EEENEDDFAKGVEDALEKEDEEKRS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.07.1120 16 DSTEYMR|NG 0.080 . LmxM.07.1120 24 GDQYPTR|MM 0.105 . LmxM.07.1120 39 CLLANAK|LQ 0.063 . LmxM.07.1120 83 SIPINGK|RC 0.055 . LmxM.07.1120 84 IPINGKR|CN 0.192 . LmxM.07.1120 101 SLALSHR|TN 0.128 . LmxM.07.1120 105 SHRTNSR|AE 0.089 . LmxM.07.1120 108 TNSRAEK|RI 0.180 . LmxM.07.1120 109 NSRAEKR|IV 0.303 . LmxM.07.1120 130 ELEALAK|KL 0.064 . LmxM.07.1120 131 LEALAKK|LR 0.074 . LmxM.07.1120 133 ALAKKLR|KD 0.105 . LmxM.07.1120 134 LAKKLRK|DD 0.098 . LmxM.07.1120 158 LLQAFVK|KV 0.111 . LmxM.07.1120 159 LQAFVKK|VS 0.119 . LmxM.07.1120 162 FVKKVSK|KE 0.056 . LmxM.07.1120 163 VKKVSKK|EN 0.135 . LmxM.07.1120 167 SKKENSR|FL 0.086 . LmxM.07.1120 174 FLAVTAR|EN 0.091 . LmxM.07.1120 180 RENLTDK|LM 0.066 . LmxM.07.1120 221 ELAMALR|LS 0.091 . LmxM.07.1120 230 MEDEMQR|QA 0.090 . LmxM.07.1120 285 SEEEMMR|RA 0.083 . LmxM.07.1120 286 EEEMMRR|AI 0.126 . LmxM.07.1120 319 TTSEACR|NE 0.144 . LmxM.07.1120 330 NEDDFAK|GV 0.119 . LmxM.07.1120 338 VEDALEK|ED 0.058 . LmxM.07.1120 343 EKEDEEK|RS 0.061 . LmxM.07.1120 344 KEDEEKR|S- 0.233 . ____________________________^_________________

  • Fasta :-

    >LmxM.07.1120 ATGGTCGAGGCGTGCTTCCTGTGCTTGGACTCCACGGAGTACATGCGCAATGGGGATCAG TACCCCACTCGCATGATGGCGGAGCAGGATGCGGCCTGCCTGCTGGCGAATGCGAAGCTG CAAGCGAACGCCGAAAACACGCTTGGCTTCCTCACAACAGGGGGGAATGCGTGTACAGTG TACGAAACTCTCACAAACAATGTGGACGCTATCATGACCTCGATCGGCAGCATCCCCATC AACGGTAAGCGCTGCAACTTCAGCTCTGGTCTGCAAATCGCGTCGTTGGCTCTCAGTCAC CGCACCAACTCCCGCGCTGAAAAGCGCATTGTCGCCTTCGTTGGCAGCCCGATCGGGGAG ACGGCAGCGGAGTTGGAGGCGCTGGCGAAAAAGCTGCGTAAAGATGACGTCGCCGTGGAC GTGGTGACATTCGGCGTGGAGTCGAACGTGGAGCTGCTGCAGGCCTTTGTGAAGAAGGTA TCCAAGAAGGAGAACTCGCGCTTCCTGGCGGTGACTGCGCGCGAGAACCTGACAGACAAA CTGATGAGCAACGCCATTCTCCTCGGCGAGGACCTTCCCGAGGGAGCCGAGGGCGGTGGC GCCAGCATGAGCGGCTTTGGTGTGGACCCCAACATGGATCCGGAGCTAGCCATGGCTCTC CGCCTCTCCATGGAGGACGAGATGCAGCGCCAGGCGGCAGCGGCCGCTGCTGCGGCTTCA TCTGCAGCCCCTGAAAGCACACCGGCTTCTGGCAGCGCTGCCACTCCTGCTGCTCCCCCA GCTCCAGCAGCGGCGCCGGTGGTGGACGAGGATGAGCTGAGCTACGAGAACATGTCAGAG GAGGAGATGATGCGGCGGGCCATCGCCCTCTCACTGCAGGATACCGCGCAGGGCGCGTCG GAAACGGTGTCCCAGCCATCGGCGCCGCAGCCTGCCACTACCTCGGAAGCGTGCAGGAAT GAGGAGGAGAACGAGGACGACTTTGCGAAAGGCGTCGAGGACGCCTTGGAGAAGGAGGAT GAGGAGAAGCGCTCGTGA
  • Download Fasta

  • Fasta :-

    MVEACFLCLDSTEYMRNGDQYPTRMMAEQDAACLLANAKLQANAENTLGFLTTGGNACTV YETLTNNVDAIMTSIGSIPINGKRCNFSSGLQIASLALSHRTNSRAEKRIVAFVGSPIGE TAAELEALAKKLRKDDVAVDVVTFGVESNVELLQAFVKKVSKKENSRFLAVTARENLTDK LMSNAILLGEDLPEGAEGGGASMSGFGVDPNMDPELAMALRLSMEDEMQRQAAAAAAAAS SAAPESTPASGSAATPAAPPAPAAAPVVDEDELSYENMSEEEMMRRAIALSLQDTAQGAS ETVSQPSAPQPATTSEACRNEEENEDDFAKGVEDALEKEDEEKRS

  • title: metal ion-dependent adhesion site (MIDAS)
  • coordinates: D10,C85,G115
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.07.1120223 SALRLSMEDE0.998unspLmxM.07.1120223 SALRLSMEDE0.998unspLmxM.07.1120223 SALRLSMEDE0.998unspLmxM.07.1120279 SYENMSEEEM0.996unspLmxM.07.1120104 SHRTNSRAEK0.992unspLmxM.07.1120161 SVKKVSKKEN0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India