LmxM.08.0230 | ABC1 family, putative

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

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  • Curated_GO_Component_IDs:        

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  • Curated_GO_Function_IDs:        

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No Results
No Results

  • Fasta :-

    >LmxM.08.0230 MTFRFSRAARYGAAAAGFMGAGTAAILLPPRETIPPVLLPSRVLFEGIGRVGRCVYAGGQ IYCDYAFHVTQEDRQELWNEVHRRCAERLVDLAEKNGGLYVKAGQIFANMSHILPYQYCQ VMAVLQDAVVKRPYAEVVAVLEKDLGRPLTEVFSYIDPTPLAAASLAQVHRGRLRDEDTE VAIKVQYIDIAHRFNGDMCTISLMFAAASYFFPGYDFGQIIAKLNDTVAAELDFRIEGRN SDRAAADLRSCGWGERVVCPRIFWNYASRRVLVSQFIPDAVKISDRAGIASMGLNVKEVA TTFFDVIAFQIFRTGFFHGDPHAGNVLVHKLPNGKPQVVLLDFGLCAELSAAQRREISDI WTASTTHDTPKITEIAHRYNCDDYELFASCFLQHPYEYFANSTSGRLNSPNALEKMRETV KHRMADLNDIVAALPKEYALVLRSIMATKAINRELGEAANRPMCMLRYSLKTSHEDLPKI QFMVLMVKAWFSEWYASLLLRFTLWRHPELSEVLESSLQLSG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/721 Sequence name : 721 Sequence length : 522 VALUES OF COMPUTED PARAMETERS Coef20 : 4.668 CoefTot : -1.418 ChDiff : -1 ZoneTo : 63 KR : 7 DE : 2 CleavSite : 12 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.947 1.594 0.306 0.685 MesoH : -0.333 0.502 -0.251 0.283 MuHd_075 : 41.132 30.860 11.378 9.250 MuHd_095 : 46.959 26.295 10.981 11.041 MuHd_100 : 48.311 27.428 12.024 10.951 MuHd_105 : 46.933 33.209 12.883 11.148 Hmax_075 : 20.067 28.700 5.287 8.400 Hmax_095 : 14.613 19.863 4.438 6.563 Hmax_100 : 16.800 18.700 5.162 6.860 Hmax_105 : 16.800 18.700 3.783 6.860 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0563 0.9437 DFMC : 0.0817 0.9183 This protein is probably imported in mitochondria. f(Ser) = 0.0317 f(Arg) = 0.1111 CMi = 0.14075 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 522 LmxM.08.0230 MTFRFSRAARYGAAAAGFMGAGTAAILLPPRETIPPVLLPSRVLFEGIGRVGRCVYAGGQIYCDYAFHVTQEDRQELWNE 80 VHRRCAERLVDLAEKNGGLYVKAGQIFANMSHILPYQYCQVMAVLQDAVVKRPYAEVVAVLEKDLGRPLTEVFSYIDPTP 160 LAAASLAQVHRGRLRDEDTEVAIKVQYIDIAHRFNGDMCTISLMFAAASYFFPGYDFGQIIAKLNDTVAAELDFRIEGRN 240 SDRAAADLRSCGWGERVVCPRIFWNYASRRVLVSQFIPDAVKISDRAGIASMGLNVKEVATTFFDVIAFQIFRTGFFHGD 320 PHAGNVLVHKLPNGKPQVVLLDFGLCAELSAAQRREISDIWTASTTHDTPKITEIAHRYNCDDYELFASCFLQHPYEYFA 400 NSTSGRLNSPNALEKMRETVKHRMADLNDIVAALPKEYALVLRSIMATKAINRELGEAANRPMCMLRYSLKTSHEDLPKI 480 QFMVLMVKAWFSEWYASLLLRFTLWRHPELSEVLESSLQLSG 560 ....................................................P........................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.08.0230 4 ---MTFR|FS 0.120 . LmxM.08.0230 7 MTFRFSR|AA 0.383 . LmxM.08.0230 10 RFSRAAR|YG 0.429 . LmxM.08.0230 31 AILLPPR|ET 0.072 . LmxM.08.0230 42 PVLLPSR|VL 0.081 . LmxM.08.0230 50 LFEGIGR|VG 0.068 . LmxM.08.0230 53 GIGRVGR|CV 0.602 *ProP* LmxM.08.0230 74 HVTQEDR|QE 0.079 . LmxM.08.0230 83 LWNEVHR|RC 0.084 . LmxM.08.0230 84 WNEVHRR|CA 0.244 . LmxM.08.0230 88 HRRCAER|LV 0.194 . LmxM.08.0230 95 LVDLAEK|NG 0.059 . LmxM.08.0230 102 NGGLYVK|AG 0.062 . LmxM.08.0230 131 LQDAVVK|RP 0.062 . LmxM.08.0230 132 QDAVVKR|PY 0.248 . LmxM.08.0230 143 VVAVLEK|DL 0.078 . LmxM.08.0230 147 LEKDLGR|PL 0.095 . LmxM.08.0230 171 SLAQVHR|GR 0.113 . LmxM.08.0230 173 AQVHRGR|LR 0.082 . LmxM.08.0230 175 VHRGRLR|DE 0.112 . LmxM.08.0230 184 DTEVAIK|VQ 0.053 . LmxM.08.0230 193 YIDIAHR|FN 0.103 . LmxM.08.0230 223 FGQIIAK|LN 0.067 . LmxM.08.0230 235 AAELDFR|IE 0.073 . LmxM.08.0230 239 DFRIEGR|NS 0.098 . LmxM.08.0230 243 EGRNSDR|AA 0.112 . LmxM.08.0230 249 RAAADLR|SC 0.232 . LmxM.08.0230 256 SCGWGER|VV 0.104 . LmxM.08.0230 261 ERVVCPR|IF 0.094 . LmxM.08.0230 269 FWNYASR|RV 0.108 . LmxM.08.0230 270 WNYASRR|VL 0.133 . LmxM.08.0230 282 FIPDAVK|IS 0.059 . LmxM.08.0230 286 AVKISDR|AG 0.091 . LmxM.08.0230 297 SMGLNVK|EV 0.073 . LmxM.08.0230 313 IAFQIFR|TG 0.072 . LmxM.08.0230 330 GNVLVHK|LP 0.065 . LmxM.08.0230 335 HKLPNGK|PQ 0.058 . LmxM.08.0230 354 ELSAAQR|RE 0.077 . LmxM.08.0230 355 LSAAQRR|EI 0.303 . LmxM.08.0230 371 TTHDTPK|IT 0.087 . LmxM.08.0230 378 ITEIAHR|YN 0.100 . LmxM.08.0230 406 ANSTSGR|LN 0.123 . LmxM.08.0230 415 SPNALEK|MR 0.080 . LmxM.08.0230 417 NALEKMR|ET 0.095 . LmxM.08.0230 421 KMRETVK|HR 0.066 . LmxM.08.0230 423 RETVKHR|MA 0.105 . LmxM.08.0230 436 IVAALPK|EY 0.067 . LmxM.08.0230 443 EYALVLR|SI 0.142 . LmxM.08.0230 449 RSIMATK|AI 0.077 . LmxM.08.0230 453 ATKAINR|EL 0.094 . LmxM.08.0230 461 LGEAANR|PM 0.073 . LmxM.08.0230 467 RPMCMLR|YS 0.093 . LmxM.08.0230 471 MLRYSLK|TS 0.071 . LmxM.08.0230 479 SHEDLPK|IQ 0.069 . LmxM.08.0230 488 FMVLMVK|AW 0.059 . LmxM.08.0230 501 YASLLLR|FT 0.108 . LmxM.08.0230 506 LRFTLWR|HP 0.104 . ____________________________^_________________

  • Fasta :-

    >LmxM.08.0230 ATGACTTTTCGGTTTAGCCGAGCAGCGCGTTATGGCGCAGCGGCTGCAGGCTTCATGGGA GCCGGCACGGCTGCTATTCTGCTGCCGCCAAGGGAGACGATCCCGCCGGTGCTGCTGCCG TCGCGGGTCCTGTTCGAAGGCATCGGCCGTGTCGGGCGGTGCGTTTACGCGGGTGGGCAG ATTTACTGCGACTACGCCTTCCACGTGACGCAGGAGGACCGGCAGGAGCTGTGGAACGAG GTGCACCGGCGGTGCGCGGAGCGGCTGGTCGATCTGGCAGAGAAAAACGGTGGGCTGTAC GTGAAGGCGGGGCAGATCTTTGCAAACATGAGTCACATCTTGCCCTACCAGTACTGCCAA GTGATGGCGGTGCTGCAGGATGCGGTGGTTAAGCGGCCCTACGCGGAAGTTGTAGCGGTC CTGGAGAAGGACTTGGGGCGTCCACTCACCGAAGTGTTTTCGTACATCGACCCGACCCCG CTGGCAGCCGCGTCGCTGGCGCAGGTGCACCGTGGCCGTCTGCGCGACGAGGACACGGAG GTGGCGATCAAGGTGCAGTACATCGACATTGCCCACCGGTTCAACGGGGACATGTGCACC ATCTCTCTGATGTTTGCCGCAGCCAGCTACTTCTTCCCTGGCTACGACTTTGGACAGATT ATCGCGAAGCTGAACGACACCGTCGCGGCGGAGCTTGACTTCCGGATTGAGGGCCGCAAC AGTGACCGGGCCGCGGCGGATCTGCGATCCTGCGGATGGGGCGAGCGCGTCGTGTGCCCA CGCATCTTCTGGAACTACGCCAGCAGGCGCGTGCTCGTGTCGCAGTTCATTCCAGATGCG GTGAAGATATCGGACCGCGCAGGCATCGCGTCGATGGGACTCAACGTGAAGGAGGTGGCG ACGACGTTCTTCGACGTCATCGCCTTCCAAATCTTTCGCACCGGGTTCTTCCACGGAGAC CCACACGCTGGCAACGTCCTCGTGCACAAGCTGCCGAACGGGAAGCCACAGGTAGTCTTG CTGGACTTTGGCCTCTGTGCGGAGCTCAGTGCGGCGCAACGCCGCGAGATCAGCGACATC TGGACGGCGTCCACCACCCACGACACTCCCAAGATCACCGAGATTGCGCACCGTTACAAC TGCGACGACTACGAGCTGTTCGCCTCCTGCTTCCTGCAGCACCCGTATGAGTACTTCGCG AACAGCACCAGCGGCCGGCTCAATAGCCCGAACGCGCTAGAGAAGATGCGGGAAACCGTG AAGCATCGCATGGCGGATCTGAACGACATCGTAGCAGCACTGCCGAAGGAGTATGCCCTC GTGCTGCGCAGCATCATGGCTACCAAAGCCATCAACCGCGAGCTCGGCGAGGCGGCGAAC CGGCCGATGTGCATGCTGCGCTACTCCCTCAAGACCTCTCACGAGGACCTGCCAAAGATC CAGTTCATGGTATTGATGGTCAAGGCGTGGTTTTCGGAGTGGTACGCGTCGCTCTTGCTG CGGTTCACGCTCTGGCGACACCCGGAGCTATCTGAGGTGTTGGAGAGCTCGCTGCAGCTG AGCGGCTAG
  • Download Fasta

  • Fasta :-

  • title: putative ATP binding site
  • coordinates: L174,R175,D176,E177,T179,V181,A191,R193,E255,S274,Q275,F276,I277,D320,G324,N325,L327,L341,D342
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.08.0230241 SEGRNSDRAA0.996unspLmxM.08.0230473 SSLKTSHEDL0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India