LmxM.08.1030a | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
LmxM.08.1030aOTHER0.8117610.0691580.119080
No Results

  • Fasta :-

    >LmxM.08.1030a MHRCCVRLPAPALLPVMTSLPLLHSPRPHLPCTVVDCSRRPAQTLVATTSSSPLYTRHCR SVRAVASAFHLLSPRSVHCFLLFPSLPASAMATSRAALCAVAVVCVVLAAACAPARAIHV GTPAAALFEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQFGITKFFDLS EAEFAARYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSC WAFSAVGNIEGQWYLAGHELVSLSEQQLVSCDDMNDGCDGGLMLQAFDWLLQNTNGHLHT EDSYPYVSGNGYVPECSNSSELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDASSF MSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNACL LSEYPVSAHVRESAAPGTSTSSETPAPRPVMVEQVICFDKNCTQGCRKTLIKANECHKNG GGGASMIKCSPQKVTMCTYSNEFCVGGGLCFETPDGKCAPYFLGSIMNTCHYT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/838 Sequence name : 838 Sequence length : 533 VALUES OF COMPUTED PARAMETERS Coef20 : 4.461 CoefTot : 2.243 ChDiff : -1 ZoneTo : 128 KR : 11 DE : 1 CleavSite : 65 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.106 2.865 0.714 0.759 MesoH : 0.666 1.172 0.056 0.381 MuHd_075 : 22.451 21.355 8.281 5.847 MuHd_095 : 38.448 23.932 9.500 8.665 MuHd_100 : 38.021 22.887 9.761 8.497 MuHd_105 : 39.280 26.199 9.839 10.194 Hmax_075 : 14.233 22.400 5.045 6.420 Hmax_095 : 14.087 17.150 3.867 4.428 Hmax_100 : 12.400 11.300 3.156 4.980 Hmax_105 : 15.900 18.500 4.446 4.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1334 0.8666 DFMC : 0.0195 0.9805 This protein is probably imported in mitochondria. f(Ser) = 0.1016 f(Arg) = 0.0859 CMi = 0.53366 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 533 LmxM.08.1030a MHRCCVRLPAPALLPVMTSLPLLHSPRPHLPCTVVDCSRRPAQTLVATTSSSPLYTRHCRSVRAVASAFHLLSPRSVHCF 80 LLFPSLPASAMATSRAALCAVAVVCVVLAAACAPARAIHVGTPAAALFEEFKRTYGRAYETLAEEQQRLANFERNLELMR 160 EHQARNPHAQFGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSC 240 WAFSAVGNIEGQWYLAGHELVSLSEQQLVSCDDMNDGCDGGLMLQAFDWLLQNTNGHLHTEDSYPYVSGNGYVPECSNSS 320 ELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDASSFMSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSW 400 GGDWGEQGYVRVVMGVNACLLSEYPVSAHVRESAAPGTSTSSETPAPRPVMVEQVICFDKNCTQGCRKTLIKANECHKNG 480 GGGASMIKCSPQKVTMCTYSNEFCVGGGLCFETPDGKCAPYFLGSIMNTCHYT 560 ...........................................................P.................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ..................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.08.1030a 3 ----MHR|CC 0.074 . LmxM.08.1030a 7 MHRCCVR|LP 0.081 . LmxM.08.1030a 27 PLLHSPR|PH 0.076 . LmxM.08.1030a 39 TVVDCSR|RP 0.077 . LmxM.08.1030a 40 VVDCSRR|PA 0.146 . LmxM.08.1030a 57 SSPLYTR|HC 0.089 . LmxM.08.1030a 60 LYTRHCR|SV 0.635 *ProP* LmxM.08.1030a 63 RHCRSVR|AV 0.441 . LmxM.08.1030a 75 FHLLSPR|SV 0.167 . LmxM.08.1030a 95 SAMATSR|AA 0.112 . LmxM.08.1030a 116 AACAPAR|AI 0.134 . LmxM.08.1030a 132 ALFEEFK|RT 0.058 . LmxM.08.1030a 133 LFEEFKR|TY 0.204 . LmxM.08.1030a 137 FKRTYGR|AY 0.111 . LmxM.08.1030a 148 LAEEQQR|LA 0.099 . LmxM.08.1030a 154 RLANFER|NL 0.115 . LmxM.08.1030a 160 RNLELMR|EH 0.074 . LmxM.08.1030a 165 MREHQAR|NP 0.196 . LmxM.08.1030a 175 AQFGITK|FF 0.074 . LmxM.08.1030a 187 EAEFAAR|YL 0.095 . LmxM.08.1030a 199 AYFAAAK|RH 0.055 . LmxM.08.1030a 200 YFAAAKR|HA 0.225 . LmxM.08.1030a 207 HAAQHYR|KA 0.141 . LmxM.08.1030a 208 AAQHYRK|AR 0.077 . LmxM.08.1030a 210 QHYRKAR|AD 0.316 . LmxM.08.1030a 223 PDAVDWR|EK 0.136 . LmxM.08.1030a 225 AVDWREK|GA 0.064 . LmxM.08.1030a 232 GAVTPVK|DQ 0.098 . LmxM.08.1030a 339 LIGSSEK|AM 0.063 . LmxM.08.1030a 347 MAAWLAK|NG 0.062 . LmxM.08.1030a 364 SSFMSYK|SG 0.068 . LmxM.08.1030a 374 LTACIGK|QL 0.067 . LmxM.08.1030a 397 VPYWVIK|NS 0.070 . LmxM.08.1030a 411 GEQGYVR|VV 0.124 . LmxM.08.1030a 431 PVSAHVR|ES 0.112 . LmxM.08.1030a 448 SETPAPR|PV 0.125 . LmxM.08.1030a 460 QVICFDK|NC 0.064 . LmxM.08.1030a 467 NCTQGCR|KT 0.068 . LmxM.08.1030a 468 CTQGCRK|TL 0.085 . LmxM.08.1030a 472 CRKTLIK|AN 0.073 . LmxM.08.1030a 478 KANECHK|NG 0.074 . LmxM.08.1030a 488 GGASMIK|CS 0.066 . LmxM.08.1030a 493 IKCSPQK|VT 0.060 . LmxM.08.1030a 517 FETPDGK|CA 0.060 . ____________________________^_________________

  • Fasta :-

    >LmxM.08.1030a ATGCACCGCTGTTGTGTGAGGTTGCCCGCACCTGCGTTGTTGCCTGTGATGACGTCCCTC CCTCTCTTGCACTCTCCCCGTCCCCACCTGCCCTGCACCGTGGTCGACTGCTCCCGACGC CCTGCACAGACTCTCGTCGCCACCACCAGCAGCAGCCCTCTATATACCCGCCACTGCCGC AGCGTTCGGGCCGTGGCCTCTGCGTTTCACTTGCTCTCCCCTCGCTCTGTTCATTGCTTC CTTCTGTTCCCCTCGCTGCCCGCGTCCGCGATGGCGACGTCGAGGGCCGCTCTCTGCGCT GTTGCGGTTGTGTGCGTGGTGCTTGCGGCTGCCTGCGCACCTGCGCGCGCGATACACGTG GGCACGCCGGCTGCTGCGCTGTTCGAGGAGTTCAAGCGGACGTACGGGCGCGCGTACGAG ACGCTGGCGGAGGAGCAGCAGCGGCTGGCGAACTTCGAGCGCAACCTGGAGCTGATGCGC GAGCACCAGGCGCGGAACCCCCACGCGCAGTTCGGGATCACGAAGTTCTTCGACCTGTCG GAGGCGGAGTTCGCCGCGCGCTACCTGAACGGCGCCGCGTACTTCGCAGCGGCGAAGCGG CACGCCGCCCAGCACTACCGCAAGGCGCGCGCGGACCTGTCGGCGGTGCCTGATGCGGTG GACTGGCGCGAGAAGGGCGCCGTGACGCCGGTGAAGGATCAGGGTGCGTGCGGGTCGTGC TGGGCGTTCTCGGCGGTCGGCAACATCGAGGGGCAGTGGTACCTTGCCGGCCACGAGCTG GTGAGCCTGTCGGAGCAGCAGCTGGTGAGCTGCGATGACATGAACGATGGCTGCGACGGC GGGCTGATGCTGCAGGCGTTCGACTGGCTGCTGCAAAACACGAACGGGCACCTGCACACG GAGGACAGCTACCCCTACGTGTCCGGCAACGGCTATGTGCCCGAGTGCTCGAACAGCAGT GAGCTCGTTGTCGGTGCGCAGATCGACGGCCACGTGTTGATCGGGAGCAGCGAAAAGGCG ATGGCTGCGTGGCTCGCGAAGAATGGCCCCATCGCGATTGCGCTGGACGCCAGCTCCTTC ATGTCCTACAAGAGCGGCGTGCTGACCGCGTGCATTGGTAAACAGCTGAACCACGGTGTG CTGCTCGTCGGGTACGACATGACTGGTGAGGTTCCGTACTGGGTGATCAAGAACTCGTGG GGTGGGGACTGGGGCGAGCAGGGCTACGTGCGCGTGGTGATGGGGGTGAACGCGTGCCTG CTCAGTGAATACCCCGTGTCCGCGCATGTGCGGGAGAGTGCCGCCCCTGGCACGAGCACG AGCAGCGAGACGCCCGCACCCAGACCCGTGATGGTGGAGCAGGTGATCTGCTTCGATAAG AACTGCACTCAGGGGTGCAGGAAAACCCTGATCAAGGCGAACGAGTGCCACAAGAACGGT GGAGGAGGCGCCTCTATGATCAAGTGCAGTCCGCAGAAGGTGACGATGTGCACGTACTCG AACGAATTCTGCGTGGGCGGGGGGCTGTGCTTCGAGACTCCTGATGGTAAGTGCGCGCCG TACTTTTTGGGCTCGATCATGAACACCTGTCACTACACGTAG
  • Download Fasta

  • Fasta :-

    MHRCCVRLPAPALLPVMTSLPLLHSPRPHLPCTVVDCSRRPAQTLVATTSSSPLYTRHCR SVRAVASAFHLLSPRSVHCFLLFPSLPASAMATSRAALCAVAVVCVVLAAACAPARAIHV GTPAAALFEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQFGITKFFDLS EAEFAARYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSC WAFSAVGNIEGQWYLAGHELVSLSEQQLVSCDDMNDGCDGGLMLQAFDWLLQNTNGHLHT EDSYPYVSGNGYVPECSNSSELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDASSF MSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNACL LSEYPVSAHVRESAAPGTSTSSETPAPRPVMVEQVICFDKNCTQGCRKTLIKANECHKNG GGGASMIKCSPQKVTMCTYSNEFCVGGGLCFETPDGKCAPYFLGSIMNTCHYT

  • title: active site
  • coordinates: Q234,C240,H378,N398
No Results
No Results
IDSitePeptideScoreMethod
LmxM.08.1030a362 SSSFMSYKSG0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India