LmxM.08.1070 | cathepsin L-like protease, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.08.1070SP0.0009230.9960980.002979CS pos: 27-28. ARA-IH. Pr: 0.7165
No Results

  • Fasta :-

    >LmxM.08.1070 MATSRAALCAVAVVCVVLAAACAPARAIHVGTPAAALFEEFKRTYGRAYETLAEEQQRLA NFERNLELMREHQARNPHAQFGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKAR ADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEGQWYLAGHELVSLSEQQLVS CDDMNDGCDGGLMLQAFDWLLQNTNGHLHTEDSYPYVSGNGYVPECSNSSELVVGAQIDG HVLIGSSEKAMAAWLAKNGPIAIALDASSFMSYKSGVLTACIGKQLNHGVLLVGYDMTGE VPYWVIKNSWGGDWGEQGYVRVVMGVNACLLSEYPVSAHVRESAAPGTSTSSETPAPRPV VVEQVICFDKNCRRGCRKTLIKVNECHKNGGGGASMIKCSPQKVTMCTYSNEFCVGGGLC FETHDGKCSPYFFGSIMNTCHYT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/23 Sequence name : 23 Sequence length : 443 VALUES OF COMPUTED PARAMETERS Coef20 : 5.343 CoefTot : 1.727 ChDiff : -7 ZoneTo : 38 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.106 2.865 0.714 0.759 MesoH : 0.031 0.586 -0.232 0.334 MuHd_075 : 16.737 13.196 3.648 4.906 MuHd_095 : 16.461 10.037 4.080 5.297 MuHd_100 : 17.241 11.708 3.756 5.418 MuHd_105 : 20.755 13.213 4.996 5.617 Hmax_075 : 15.200 22.800 3.606 5.780 Hmax_095 : 13.563 18.637 6.211 5.845 Hmax_100 : 14.100 19.100 2.670 6.060 Hmax_105 : 13.100 15.983 4.493 5.240 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7515 0.2485 DFMC : 0.7818 0.2182
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 443 LmxM.08.1070 MATSRAALCAVAVVCVVLAAACAPARAIHVGTPAAALFEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQ 80 FGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIE 160 GQWYLAGHELVSLSEQQLVSCDDMNDGCDGGLMLQAFDWLLQNTNGHLHTEDSYPYVSGNGYVPECSNSSELVVGAQIDG 240 HVLIGSSEKAMAAWLAKNGPIAIALDASSFMSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYV 320 RVVMGVNACLLSEYPVSAHVRESAAPGTSTSSETPAPRPVVVEQVICFDKNCRRGCRKTLIKVNECHKNGGGGASMIKCS 400 PQKVTMCTYSNEFCVGGGLCFETHDGKCSPYFFGSIMNTCHYT 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.08.1070 5 --MATSR|AA 0.098 . LmxM.08.1070 26 AACAPAR|AI 0.134 . LmxM.08.1070 42 ALFEEFK|RT 0.058 . LmxM.08.1070 43 LFEEFKR|TY 0.204 . LmxM.08.1070 47 FKRTYGR|AY 0.111 . LmxM.08.1070 58 LAEEQQR|LA 0.099 . LmxM.08.1070 64 RLANFER|NL 0.115 . LmxM.08.1070 70 RNLELMR|EH 0.074 . LmxM.08.1070 75 MREHQAR|NP 0.196 . LmxM.08.1070 85 AQFGITK|FF 0.074 . LmxM.08.1070 97 EAEFAAR|YL 0.095 . LmxM.08.1070 109 AYFAAAK|RH 0.055 . LmxM.08.1070 110 YFAAAKR|HA 0.225 . LmxM.08.1070 117 HAAQHYR|KA 0.141 . LmxM.08.1070 118 AAQHYRK|AR 0.077 . LmxM.08.1070 120 QHYRKAR|AD 0.316 . LmxM.08.1070 133 PDAVDWR|EK 0.136 . LmxM.08.1070 135 AVDWREK|GA 0.064 . LmxM.08.1070 142 GAVTPVK|DQ 0.098 . LmxM.08.1070 249 LIGSSEK|AM 0.063 . LmxM.08.1070 257 MAAWLAK|NG 0.062 . LmxM.08.1070 274 SSFMSYK|SG 0.068 . LmxM.08.1070 284 LTACIGK|QL 0.067 . LmxM.08.1070 307 VPYWVIK|NS 0.070 . LmxM.08.1070 321 GEQGYVR|VV 0.124 . LmxM.08.1070 341 PVSAHVR|ES 0.112 . LmxM.08.1070 358 SETPAPR|PV 0.110 . LmxM.08.1070 370 QVICFDK|NC 0.059 . LmxM.08.1070 373 CFDKNCR|RG 0.066 . LmxM.08.1070 374 FDKNCRR|GC 0.136 . LmxM.08.1070 377 NCRRGCR|KT 0.201 . LmxM.08.1070 378 CRRGCRK|TL 0.110 . LmxM.08.1070 382 CRKTLIK|VN 0.065 . LmxM.08.1070 388 KVNECHK|NG 0.070 . LmxM.08.1070 398 GGASMIK|CS 0.066 . LmxM.08.1070 403 IKCSPQK|VT 0.060 . LmxM.08.1070 427 FETHDGK|CS 0.057 . ____________________________^_________________

  • Fasta :-

    >LmxM.08.1070 ATGGCGACGTCGAGGGCCGCTCTCTGCGCTGTTGCGGTTGTGTGCGTGGTGCTTGCGGCT GCCTGCGCACCCGCGCGCGCGATACACGTGGGCACGCCGGCTGCTGCGCTGTTCGAGGAG TTCAAGCGGACGTACGGGCGCGCGTACGAGACGCTGGCGGAGGAGCAGCAGCGGCTGGCG AACTTCGAGCGCAACCTGGAGCTGATGCGCGAGCACCAGGCGCGGAACCCCCACGCGCAG TTCGGGATCACGAAGTTCTTCGACCTGTCGGAGGCGGAGTTCGCCGCGCGCTACCTGAAC GGCGCCGCGTACTTCGCAGCGGCGAAGCGGCACGCCGCCCAGCACTACCGCAAGGCGCGC GCGGACCTGTCGGCGGTGCCTGATGCGGTGGACTGGCGCGAGAAGGGCGCCGTGACGCCG GTGAAGGATCAGGGTGCGTGCGGGTCGTGCTGGGCGTTCTCGGCGGTCGGCAACATCGAG GGGCAGTGGTACCTTGCCGGCCACGAGCTGGTGAGCCTGTCGGAGCAGCAGCTGGTGAGC TGCGATGACATGAACGATGGCTGCGACGGCGGGCTGATGCTGCAGGCGTTCGACTGGCTG CTGCAAAACACGAACGGGCACCTGCACACGGAGGACAGCTACCCCTACGTGTCCGGCAAC GGCTATGTGCCCGAGTGCTCGAACAGCAGTGAGCTCGTTGTCGGTGCGCAGATCGACGGC CACGTGTTGATCGGAAGCAGCGAAAAGGCGATGGCTGCGTGGCTCGCGAAGAATGGCCCC ATCGCGATTGCGCTGGACGCCAGCTCCTTCATGTCCTACAAGAGCGGCGTGCTGACCGCG TGCATTGGTAAACAGCTGAACCACGGTGTGCTGCTCGTCGGGTACGACATGACTGGTGAG GTTCCGTACTGGGTGATCAAGAACTCGTGGGGTGGGGACTGGGGCGAGCAGGGCTACGTG CGCGTGGTGATGGGGGTGAACGCGTGCCTGCTCAGTGAATACCCCGTGTCCGCGCATGTG CGGGAGAGTGCCGCCCCTGGCACGAGCACGAGCAGCGAGACGCCCGCACCCAGACCCGTG GTGGTGGAGCAGGTGATCTGCTTCGATAAGAACTGCAGGAGAGGGTGCAGGAAAACCCTG ATCAAGGTGAACGAGTGCCACAAGAACGGTGGAGGAGGCGCCTCTATGATCAAGTGCAGT CCGCAGAAGGTGACGATGTGCACGTACTCGAACGAATTCTGCGTGGGCGGGGGGCTGTGC TTCGAGACTCATGATGGTAAGTGCTCGCCGTACTTCTTCGGCTCGATCATGAACACCTGT CACTACACGTAG
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  • Fasta :-

    MATSRAALCAVAVVCVVLAAACAPARAIHVGTPAAALFEEFKRTYGRAYETLAEEQQRLA NFERNLELMREHQARNPHAQFGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKAR ADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEGQWYLAGHELVSLSEQQLVS CDDMNDGCDGGLMLQAFDWLLQNTNGHLHTEDSYPYVSGNGYVPECSNSSELVVGAQIDG HVLIGSSEKAMAAWLAKNGPIAIALDASSFMSYKSGVLTACIGKQLNHGVLLVGYDMTGE VPYWVIKNSWGGDWGEQGYVRVVMGVNACLLSEYPVSAHVRESAAPGTSTSSETPAPRPV VVEQVICFDKNCRRGCRKTLIKVNECHKNGGGGASMIKCSPQKVTMCTYSNEFCVGGGLC FETHDGKCSPYFFGSIMNTCHYT

  • title: active site
  • coordinates: Q144,C150,H288,N308
No Results
No Results
IDSitePeptideScoreMethod
LmxM.08.1070272 SSSFMSYKSG0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India