LmxM.08_29.0820 | CPC cysteine peptidase, Clan CA, family C1, Cathepsin B-like

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008234      

  • Computed_GO_Functions:  cysteine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.08_29.0820SP0.0173740.9825190.000107CS pos: 25-26. VSA-LY. Pr: 0.7223
No Results

  • Fasta :-

    >LmxM.08_29.0820 MAFRTKSALCLVAVFVVLLATTVSALYAKPSDIPLLGKSFVAETNSKAKGQWTASADNGH LVTGKSLEEVRKLMGVTSMSTEAVPPRNFSVEEMQQDLPESFDASEKWPMCVTIGEIRDQ SNCGSCWAIAAVEAMSDRYCTMSGIPDRRISTTNLLSCCFICGFGCYGGIPAMAWLWWVW VGVTTELCQPYPFGPCSHHGNSSKYPPCPNTIYNTPKCNTTCDNVEMELVKYKGVSSYSI KGERELMVELMNNGPLEVAMQVYADFVAYKSGVYKHVSGDHLGGHAVKLVGWGVKDGIPY WKIANSWNTDWGDKGYFLIQRGNDECGIESSGVAGKPGEE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/513 Sequence name : 513 Sequence length : 340 VALUES OF COMPUTED PARAMETERS Coef20 : 5.230 CoefTot : 1.291 ChDiff : -6 ZoneTo : 31 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.218 2.629 0.644 0.763 MesoH : 0.457 0.590 -0.005 0.319 MuHd_075 : 11.523 11.463 3.870 3.450 MuHd_095 : 13.599 11.804 3.460 4.236 MuHd_100 : 13.349 10.728 2.969 3.896 MuHd_105 : 12.723 10.249 2.276 3.114 Hmax_075 : 19.250 26.017 5.970 7.140 Hmax_095 : 17.763 23.800 3.655 6.948 Hmax_100 : 18.700 24.800 3.753 7.320 Hmax_105 : 16.362 22.838 2.771 6.170 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9677 0.0323 DFMC : 0.9549 0.0451
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 340 LmxM.08_29.0820 MAFRTKSALCLVAVFVVLLATTVSALYAKPSDIPLLGKSFVAETNSKAKGQWTASADNGHLVTGKSLEEVRKLMGVTSMS 80 TEAVPPRNFSVEEMQQDLPESFDASEKWPMCVTIGEIRDQSNCGSCWAIAAVEAMSDRYCTMSGIPDRRISTTNLLSCCF 160 ICGFGCYGGIPAMAWLWWVWVGVTTELCQPYPFGPCSHHGNSSKYPPCPNTIYNTPKCNTTCDNVEMELVKYKGVSSYSI 240 KGERELMVELMNNGPLEVAMQVYADFVAYKSGVYKHVSGDHLGGHAVKLVGWGVKDGIPYWKIANSWNTDWGDKGYFLIQ 320 RGNDECGIESSGVAGKPGEE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.08_29.0820 4 ---MAFR|TK 0.082 . LmxM.08_29.0820 6 -MAFRTK|SA 0.083 . LmxM.08_29.0820 29 VSALYAK|PS 0.069 . LmxM.08_29.0820 38 DIPLLGK|SF 0.071 . LmxM.08_29.0820 47 VAETNSK|AK 0.067 . LmxM.08_29.0820 49 ETNSKAK|GQ 0.076 . LmxM.08_29.0820 65 GHLVTGK|SL 0.102 . LmxM.08_29.0820 71 KSLEEVR|KL 0.095 . LmxM.08_29.0820 72 SLEEVRK|LM 0.084 . LmxM.08_29.0820 87 TEAVPPR|NF 0.166 . LmxM.08_29.0820 107 SFDASEK|WP 0.060 . LmxM.08_29.0820 118 VTIGEIR|DQ 0.097 . LmxM.08_29.0820 138 VEAMSDR|YC 0.106 . LmxM.08_29.0820 148 MSGIPDR|RI 0.103 . LmxM.08_29.0820 149 SGIPDRR|IS 0.137 . LmxM.08_29.0820 204 HHGNSSK|YP 0.062 . LmxM.08_29.0820 217 TIYNTPK|CN 0.081 . LmxM.08_29.0820 231 VEMELVK|YK 0.068 . LmxM.08_29.0820 233 MELVKYK|GV 0.084 . LmxM.08_29.0820 241 VSSYSIK|GE 0.073 . LmxM.08_29.0820 244 YSIKGER|EL 0.090 . LmxM.08_29.0820 270 ADFVAYK|SG 0.073 . LmxM.08_29.0820 275 YKSGVYK|HV 0.114 . LmxM.08_29.0820 288 LGGHAVK|LV 0.104 . LmxM.08_29.0820 295 LVGWGVK|DG 0.066 . LmxM.08_29.0820 302 DGIPYWK|IA 0.066 . LmxM.08_29.0820 314 NTDWGDK|GY 0.061 . LmxM.08_29.0820 321 GYFLIQR|GN 0.091 . LmxM.08_29.0820 336 SSGVAGK|PG 0.073 . ____________________________^_________________

  • Fasta :-

    >LmxM.08_29.0820 ATGGCCTTCCGCACCAAGTCTGCGCTGTGCCTGGTGGCCGTGTTCGTCGTGCTGCTGGCC ACCACGGTGAGCGCGCTCTATGCCAAGCCAAGTGACATTCCGCTTCTCGGCAAGAGTTTT GTGGCAGAGACCAACTCAAAGGCGAAGGGTCAGTGGACCGCCTCGGCCGATAATGGCCAT TTGGTCACCGGCAAGAGCCTCGAGGAGGTGCGCAAGCTGATGGGTGTGACCAGCATGAGC ACCGAGGCTGTCCCGCCCCGCAACTTCTCCGTGGAGGAAATGCAGCAAGACCTGCCAGAG TCCTTCGACGCCAGCGAAAAGTGGCCCATGTGCGTGACGATCGGCGAGATTCGTGACCAA TCGAACTGCGGCTCATGCTGGGCCATTGCCGCGGTGGAGGCTATGTCAGACCGCTACTGC ACCATGTCTGGCATTCCGGACCGCCGCATATCGACCACCAACCTTCTTTCCTGCTGCTTC ATATGCGGCTTTGGCTGCTACGGCGGCATTCCGGCGATGGCGTGGCTGTGGTGGGTGTGG GTTGGCGTAACGACGGAGCTCTGCCAGCCCTACCCCTTTGGCCCATGCAGCCATCACGGG AACAGCAGCAAGTACCCGCCCTGCCCGAACACCATCTACAATACCCCCAAATGCAACACC ACCTGTGACAACGTCGAGATGGAGCTGGTCAAGTACAAGGGTGTCTCATCTTACTCCATC AAGGGCGAAAGGGAGCTCATGGTCGAGCTCATGAACAACGGCCCCCTGGAGGTAGCCATG CAGGTGTACGCCGACTTCGTTGCCTACAAGAGTGGGGTGTACAAGCACGTCAGTGGTGAT CATCTCGGCGGGCACGCCGTGAAGCTGGTCGGCTGGGGAGTCAAAGACGGCATCCCGTAC TGGAAGATTGCGAACAGCTGGAACACCGACTGGGGTGACAAAGGCTACTTCCTGATCCAG CGCGGCAACGATGAGTGCGGCATTGAGAGCAGCGGCGTTGCTGGCAAACCCGGAGAGGAG TAA
  • Download Fasta

  • Fasta :-

    MAFRTKSALCLVAVFVVLLATTVSALYAKPSDIPLLGKSFVAETNSKAKGQWTASADNGH LVTGKSLEEVRKLMGVTSMSTEAVPPRNFSVEEMQQDLPESFDASEKWPMCVTIGEIRDQ SNCGSCWAIAAVEAMSDRYCTMSGIPDRRISTTNLLSCCFICGFGCYGGIPAMAWLWWVW VGVTTELCQPYPFGPCSHHGNSSKYPPCPNTIYNTPKCNTTCDNVEMELVKYKGVSSYSI KGERELMVELMNNGPLEVAMQVYADFVAYKSGVYKHVSGDHLGGHAVKLVGWGVKDGIPY WKIANSWNTDWGDKGYFLIQRGNDECGIESSGVAGKPGEE

  • title: active site
  • coordinates: Q120,C126,H285,N305
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.08_29.0820239 SVSSYSIKGE0.993unspLmxM.08_29.0820239 SVSSYSIKGE0.993unspLmxM.08_29.0820239 SVSSYSIKGE0.993unspLmxM.08_29.082090 SPRNFSVEEM0.996unspLmxM.08_29.0820151 SDRRISTTNL0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India