LmxM.08_29.2300 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.08_29.2300OTHER0.9968330.0031630.000004
No Results

  • Fasta :-

    >LmxM.08_29.2300 MPFPVTQEACPHAWSDSAIVTPFPGKTVHRDECAYCCRTCRQGDGVYVCMACHTGLCCEH LEKHMGVHGAHAMYTTVKKLPAKEMEEVKDVNYLGVVAPAEYETAVCCADCQVQFAQIPD LAVEAYSGIINAPEPGAQDSTADGGVGRLQKPQCPHLVCLEQLASPFAVCPPTSDDICSV EMCGCHVNNWMCVTCGAIGCPRPEAGGQGHALQHYELTGHPACVKLGTITAQGADYYCYA CDDDVDDVHFEAHMAHFGIDVQTAKKTAKTMGELEYDYSSQFDFNKITEAGVSLTPSYGP GHTGIENIGNSCYIASVVQCLMSLGPFQHSFFPAKSSPHQAQCSANPYNCHHCQTERVAA GLLSGEFSREGHELTNGICPRLFKKVYAHQHPEFSTGAQQDAQEYLLYLLTEMQRHVHLN SSGSTSAGNVQQQIHPSDIMEMVIEQRMQCSKCQRVRYTYETDKCLSLPIPIDPVSASSV AAAASEEEMNAIRPRCSLEACLQAATSPSGIECRCEACLESAVYYTVTRLASFPDVLPVY IRRTYFDMTTRSTKKMDAYVEVPQELVLEAYRGTGLQPGEVLMPASSASPARQPRVDAHA PAPPQEVDEVALVSVVSMGIEMDVARYALLQTNMNVELAIDYIFSHPHIADEIKAAPPLH AEEQKQYLAPTHNATSVSAPKPATDGAASYELTAMISHMGASARTGHYVCHIKDAATGKW LLFNDEKVGESQNPPFSLASLYFFQRKA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/58 Sequence name : 58 Sequence length : 748 VALUES OF COMPUTED PARAMETERS Coef20 : 3.603 CoefTot : -0.661 ChDiff : -34 ZoneTo : 7 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.435 1.424 0.309 0.489 MesoH : -0.077 0.351 -0.161 0.225 MuHd_075 : 20.790 16.838 7.983 4.281 MuHd_095 : 23.438 13.128 7.444 3.273 MuHd_100 : 16.590 8.412 5.834 1.857 MuHd_105 : 9.872 4.841 4.076 0.637 Hmax_075 : 14.117 10.150 2.345 4.538 Hmax_095 : 11.200 7.962 2.226 3.001 Hmax_100 : 10.800 5.800 2.114 2.810 Hmax_105 : 6.900 3.900 0.565 2.205 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9846 0.0154 DFMC : 0.9692 0.0308
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 748 LmxM.08_29.2300 MPFPVTQEACPHAWSDSAIVTPFPGKTVHRDECAYCCRTCRQGDGVYVCMACHTGLCCEHLEKHMGVHGAHAMYTTVKKL 80 PAKEMEEVKDVNYLGVVAPAEYETAVCCADCQVQFAQIPDLAVEAYSGIINAPEPGAQDSTADGGVGRLQKPQCPHLVCL 160 EQLASPFAVCPPTSDDICSVEMCGCHVNNWMCVTCGAIGCPRPEAGGQGHALQHYELTGHPACVKLGTITAQGADYYCYA 240 CDDDVDDVHFEAHMAHFGIDVQTAKKTAKTMGELEYDYSSQFDFNKITEAGVSLTPSYGPGHTGIENIGNSCYIASVVQC 320 LMSLGPFQHSFFPAKSSPHQAQCSANPYNCHHCQTERVAAGLLSGEFSREGHELTNGICPRLFKKVYAHQHPEFSTGAQQ 400 DAQEYLLYLLTEMQRHVHLNSSGSTSAGNVQQQIHPSDIMEMVIEQRMQCSKCQRVRYTYETDKCLSLPIPIDPVSASSV 480 AAAASEEEMNAIRPRCSLEACLQAATSPSGIECRCEACLESAVYYTVTRLASFPDVLPVYIRRTYFDMTTRSTKKMDAYV 560 EVPQELVLEAYRGTGLQPGEVLMPASSASPARQPRVDAHAPAPPQEVDEVALVSVVSMGIEMDVARYALLQTNMNVELAI 640 DYIFSHPHIADEIKAAPPLHAEEQKQYLAPTHNATSVSAPKPATDGAASYELTAMISHMGASARTGHYVCHIKDAATGKW 720 LLFNDEKVGESQNPPFSLASLYFFQRKA 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ............................ 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.08_29.2300 26 VTPFPGK|TV 0.074 . LmxM.08_29.2300 30 PGKTVHR|DE 0.107 . LmxM.08_29.2300 38 ECAYCCR|TC 0.096 . LmxM.08_29.2300 41 YCCRTCR|QG 0.272 . LmxM.08_29.2300 63 CCEHLEK|HM 0.069 . LmxM.08_29.2300 78 AMYTTVK|KL 0.072 . LmxM.08_29.2300 79 MYTTVKK|LP 0.087 . LmxM.08_29.2300 83 VKKLPAK|EM 0.072 . LmxM.08_29.2300 89 KEMEEVK|DV 0.086 . LmxM.08_29.2300 148 ADGGVGR|LQ 0.092 . LmxM.08_29.2300 151 GVGRLQK|PQ 0.136 . LmxM.08_29.2300 202 GAIGCPR|PE 0.096 . LmxM.08_29.2300 225 GHPACVK|LG 0.054 . LmxM.08_29.2300 265 IDVQTAK|KT 0.067 . LmxM.08_29.2300 266 DVQTAKK|TA 0.096 . LmxM.08_29.2300 269 TAKKTAK|TM 0.088 . LmxM.08_29.2300 286 SQFDFNK|IT 0.083 . LmxM.08_29.2300 335 HSFFPAK|SS 0.097 . LmxM.08_29.2300 357 HHCQTER|VA 0.097 . LmxM.08_29.2300 369 LSGEFSR|EG 0.091 . LmxM.08_29.2300 381 TNGICPR|LF 0.118 . LmxM.08_29.2300 384 ICPRLFK|KV 0.190 . LmxM.08_29.2300 385 CPRLFKK|VY 0.115 . LmxM.08_29.2300 415 LLTEMQR|HV 0.090 . LmxM.08_29.2300 447 EMVIEQR|MQ 0.075 . LmxM.08_29.2300 452 QRMQCSK|CQ 0.066 . LmxM.08_29.2300 455 QCSKCQR|VR 0.105 . LmxM.08_29.2300 457 SKCQRVR|YT 0.111 . LmxM.08_29.2300 464 YTYETDK|CL 0.059 . LmxM.08_29.2300 493 EEMNAIR|PR 0.076 . LmxM.08_29.2300 495 MNAIRPR|CS 0.106 . LmxM.08_29.2300 514 PSGIECR|CE 0.090 . LmxM.08_29.2300 529 VYYTVTR|LA 0.076 . LmxM.08_29.2300 542 VLPVYIR|RT 0.077 . LmxM.08_29.2300 543 LPVYIRR|TY 0.139 . LmxM.08_29.2300 551 YFDMTTR|ST 0.108 . LmxM.08_29.2300 554 MTTRSTK|KM 0.135 . LmxM.08_29.2300 555 TTRSTKK|MD 0.108 . LmxM.08_29.2300 572 LVLEAYR|GT 0.094 . LmxM.08_29.2300 592 SSASPAR|QP 0.113 . LmxM.08_29.2300 595 SPARQPR|VD 0.339 . LmxM.08_29.2300 626 IEMDVAR|YA 0.134 . LmxM.08_29.2300 654 HIADEIK|AA 0.073 . LmxM.08_29.2300 665 LHAEEQK|QY 0.067 . LmxM.08_29.2300 681 TSVSAPK|PA 0.082 . LmxM.08_29.2300 704 HMGASAR|TG 0.115 . LmxM.08_29.2300 713 HYVCHIK|DA 0.082 . LmxM.08_29.2300 719 KDAATGK|WL 0.066 . LmxM.08_29.2300 727 LLFNDEK|VG 0.060 . LmxM.08_29.2300 746 SLYFFQR|KA 0.112 . LmxM.08_29.2300 747 LYFFQRK|A- 0.089 . ____________________________^_________________

  • Fasta :-

    >LmxM.08_29.2300 ATGCCGTTCCCTGTGACGCAGGAGGCGTGTCCTCATGCGTGGAGTGACTCTGCCATAGTG ACCCCGTTCCCCGGAAAGACAGTGCACCGCGACGAGTGCGCGTACTGCTGCCGCACGTGC CGTCAAGGCGACGGGGTCTATGTATGTATGGCATGCCACACGGGTCTGTGCTGTGAGCAC CTGGAGAAACACATGGGGGTGCACGGGGCGCACGCCATGTACACAACCGTCAAGAAGCTC CCTGCAAAGGAAATGGAGGAGGTGAAGGATGTGAATTACCTTGGTGTAGTGGCCCCCGCG GAGTATGAGACGGCCGTGTGCTGCGCGGATTGCCAGGTTCAGTTTGCGCAAATACCGGAC CTGGCTGTGGAGGCGTACAGCGGCATCATCAACGCACCGGAGCCAGGCGCGCAGGATAGC ACAGCTGATGGCGGTGTGGGCCGGCTGCAGAAGCCGCAGTGCCCTCACCTGGTGTGCCTC GAACAGCTGGCGAGCCCTTTCGCTGTTTGTCCACCGACTTCCGACGACATCTGCTCCGTG GAGATGTGCGGATGCCACGTGAACAACTGGATGTGCGTCACGTGCGGTGCAATCGGTTGC CCTCGTCCCGAGGCAGGCGGCCAGGGTCATGCACTACAGCACTATGAGCTGACAGGACAC CCGGCGTGTGTCAAGCTTGGGACCATCACCGCGCAGGGCGCCGACTATTATTGCTACGCC TGCGACGATGACGTTGATGACGTACACTTCGAAGCCCACATGGCACACTTCGGCATTGAC GTACAAACTGCCAAGAAGACCGCCAAGACGATGGGCGAGCTCGAGTACGACTACTCCTCG CAGTTTGACTTCAACAAGATCACGGAGGCCGGCGTGTCCTTGACGCCATCCTACGGCCCA GGCCACACTGGCATCGAGAATATCGGCAACAGCTGCTACATCGCATCCGTTGTGCAGTGC CTTATGTCGCTGGGCCCGTTCCAGCACTCCTTCTTTCCGGCCAAGTCATCCCCGCATCAG GCGCAGTGCAGCGCGAATCCGTACAACTGCCACCACTGCCAAACAGAGCGCGTGGCAGCC GGCTTGCTCTCCGGTGAGTTCAGCCGCGAAGGTCACGAGCTCACCAACGGCATTTGCCCC CGCCTCTTCAAGAAGGTGTACGCCCACCAGCACCCTGAGTTCTCCACCGGCGCCCAGCAG GATGCTCAGGAGTACCTGCTTTACCTACTGACAGAGATGCAGCGGCACGTGCACCTCAAC AGCAGCGGGAGCACCAGTGCCGGCAATGTGCAGCAGCAGATTCACCCGTCTGATATCATG GAGATGGTGATTGAGCAGCGTATGCAGTGCAGCAAGTGCCAGCGAGTGCGTTACACGTAC GAGACGGACAAATGCCTATCCTTGCCGATCCCGATTGATCCAGTGTCGGCCTCGTCTGTT GCGGCTGCTGCAAGCGAGGAGGAGATGAACGCGATACGGCCCCGGTGCTCGCTGGAGGCC TGCCTGCAAGCAGCCACCTCGCCGAGCGGCATCGAGTGCCGGTGCGAGGCATGCCTTGAA TCGGCCGTGTACTACACCGTCACCCGTCTCGCCAGCTTTCCAGATGTTCTGCCAGTGTAC ATTCGCCGCACGTACTTCGACATGACTACCCGCAGCACAAAGAAAATGGATGCATATGTG GAGGTACCGCAAGAGCTCGTTCTGGAGGCTTACCGCGGGACTGGGCTGCAGCCGGGTGAG GTGCTGATGCCTGCTTCGTCAGCCTCCCCTGCACGACAACCTAGGGTAGATGCCCACGCT CCCGCTCCGCCGCAGGAAGTAGATGAGGTGGCACTGGTATCGGTGGTTAGCATGGGGATC GAGATGGACGTCGCGCGCTACGCCCTCTTACAGACGAACATGAACGTTGAGCTCGCCATT GACTACATATTCAGCCATCCGCATATCGCCGACGAGATCAAGGCCGCGCCACCGTTACAC GCCGAGGAGCAGAAGCAGTATTTGGCCCCAACCCACAACGCTACTTCAGTGAGCGCTCCG AAACCGGCTACCGATGGGGCCGCTTCATACGAGCTCACAGCGATGATCAGCCACATGGGC GCGAGTGCGCGGACGGGGCATTACGTTTGCCACATTAAGGATGCCGCGACGGGCAAGTGG CTCCTGTTCAATGATGAAAAGGTAGGTGAGTCGCAGAACCCGCCCTTCTCCCTGGCGTCG CTGTACTTTTTCCAACGCAAGGCGTAA
  • Download Fasta

  • Fasta :-

    MPFPVTQEACPHAWSDSAIVTPFPGKTVHRDECAYCCRTCRQGDGVYVCMACHTGLCCEH LEKHMGVHGAHAMYTTVKKLPAKEMEEVKDVNYLGVVAPAEYETAVCCADCQVQFAQIPD LAVEAYSGIINAPEPGAQDSTADGGVGRLQKPQCPHLVCLEQLASPFAVCPPTSDDICSV EMCGCHVNNWMCVTCGAIGCPRPEAGGQGHALQHYELTGHPACVKLGTITAQGADYYCYA CDDDVDDVHFEAHMAHFGIDVQTAKKTAKTMGELEYDYSSQFDFNKITEAGVSLTPSYGP GHTGIENIGNSCYIASVVQCLMSLGPFQHSFFPAKSSPHQAQCSANPYNCHHCQTERVAA GLLSGEFSREGHELTNGICPRLFKKVYAHQHPEFSTGAQQDAQEYLLYLLTEMQRHVHLN SSGSTSAGNVQQQIHPSDIMEMVIEQRMQCSKCQRVRYTYETDKCLSLPIPIDPVSASSV AAAASEEEMNAIRPRCSLEACLQAATSPSGIECRCEACLESAVYYTVTRLASFPDVLPVY IRRTYFDMTTRSTKKMDAYVEVPQELVLEAYRGTGLQPGEVLMPASSASPARQPRVDAHA PAPPQEVDEVALVSVVSMGIEMDVARYALLQTNMNVELAIDYIFSHPHIADEIKAAPPLH AEEQKQYLAPTHNATSVSAPKPATDGAASYELTAMISHMGASARTGHYVCHIKDAATGKW LLFNDEKVGESQNPPFSLASLYFFQRKA

  • title: Active Site
  • coordinates: N307,C312,H707,D725
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.08_29.2300559 YKMDAYVEVP0.99unspLmxM.08_29.2300689 SDGAASYELT0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India