LmxM.08_29.2770 | hypothetical protein, conserved

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_IDPredictionOTHERSPmTPCS_Position
LmxM.08_29.2770OTHER0.8689540.0776540.053393
No Results

  • Fasta :-

    >LmxM.08_29.2770 MRPHGLSVVPSIVQPSPFLTRAICALYWKDTFLGSCVAIAPSIVMTAGHHYNAVRDDVGD FSVLTRPGHWAAVEYASKDSTYDVVVFWLCEEVTTHTSLRGYLPAVGAQVATVWLSPKPP HDAIVSPGVVIESETEKCVARGTVSMTGSSGAPVVDVFGEHIVGLHLTSNMRDGSRVSGF IPSRKLVSLFAEMWVEHARVLPSA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/723 Sequence name : 723 Sequence length : 204 VALUES OF COMPUTED PARAMETERS Coef20 : 3.687 CoefTot : -1.387 ChDiff : -3 ZoneTo : 55 KR : 4 DE : 1 CleavSite : 57 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.912 1.712 0.396 0.633 MesoH : -0.101 0.469 -0.234 0.277 MuHd_075 : 30.201 24.955 6.278 8.075 MuHd_095 : 26.238 20.341 8.404 6.101 MuHd_100 : 25.502 24.678 8.238 7.505 MuHd_105 : 27.241 27.305 9.480 8.174 Hmax_075 : 20.000 20.400 3.940 7.100 Hmax_095 : 13.100 19.775 2.915 6.000 Hmax_100 : 16.000 19.700 3.881 6.040 Hmax_105 : 15.700 24.200 3.700 7.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6581 0.3419 DFMC : 0.6437 0.3563
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 204 LmxM.08_29.2770 MRPHGLSVVPSIVQPSPFLTRAICALYWKDTFLGSCVAIAPSIVMTAGHHYNAVRDDVGDFSVLTRPGHWAAVEYASKDS 80 TYDVVVFWLCEEVTTHTSLRGYLPAVGAQVATVWLSPKPPHDAIVSPGVVIESETEKCVARGTVSMTGSSGAPVVDVFGE 160 HIVGLHLTSNMRDGSRVSGFIPSRKLVSLFAEMWVEHARVLPSA 240 ................................................................................ 80 ................................................................................ 160 ............................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.08_29.2770 2 -----MR|PH 0.090 . LmxM.08_29.2770 21 PSPFLTR|AI 0.088 . LmxM.08_29.2770 29 ICALYWK|DT 0.069 . LmxM.08_29.2770 55 HHYNAVR|DD 0.097 . LmxM.08_29.2770 66 DFSVLTR|PG 0.091 . LmxM.08_29.2770 78 AVEYASK|DS 0.063 . LmxM.08_29.2770 100 TTHTSLR|GY 0.125 . LmxM.08_29.2770 118 TVWLSPK|PP 0.073 . LmxM.08_29.2770 137 IESETEK|CV 0.095 . LmxM.08_29.2770 141 TEKCVAR|GT 0.121 . LmxM.08_29.2770 172 HLTSNMR|DG 0.088 . LmxM.08_29.2770 176 NMRDGSR|VS 0.082 . LmxM.08_29.2770 184 SGFIPSR|KL 0.075 . LmxM.08_29.2770 185 GFIPSRK|LV 0.104 . LmxM.08_29.2770 199 MWVEHAR|VL 0.094 . ____________________________^_________________

  • Fasta :-

    >LmxM.08_29.2770 ATGAGGCCACATGGACTTTCCGTGGTGCCATCCATTGTTCAGCCTTCGCCGTTCCTCACT CGTGCCATCTGCGCCCTTTACTGGAAAGACACTTTTCTCGGCAGCTGCGTGGCCATCGCC CCGTCCATTGTGATGACTGCGGGTCACCACTACAACGCCGTTCGCGACGATGTCGGCGAC TTCAGCGTGCTGACACGGCCAGGGCACTGGGCGGCAGTCGAGTACGCGTCAAAGGATAGC ACGTATGACGTTGTGGTTTTCTGGCTCTGCGAGGAAGTGACGACGCACACCTCGCTGCGA GGGTATCTGCCCGCGGTGGGGGCACAGGTGGCGACTGTATGGTTGTCCCCTAAGCCACCA CACGACGCGATTGTGTCGCCAGGCGTCGTGATCGAGAGCGAAACGGAGAAGTGCGTGGCA CGCGGCACTGTGAGCATGACCGGATCGAGCGGTGCGCCTGTAGTGGACGTCTTCGGTGAG CATATTGTCGGTCTCCACCTCACGTCCAACATGCGCGACGGCTCACGTGTGTCTGGGTTC ATACCGTCACGCAAGCTGGTCTCTCTTTTCGCCGAGATGTGGGTTGAGCACGCTCGTGTC TTGCCGTCCGCATAG
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  • Fasta :-

    MRPHGLSVVPSIVQPSPFLTRAICALYWKDTFLGSCVAIAPSIVMTAGHHYNAVRDDVGD FSVLTRPGHWAAVEYASKDSTYDVVVFWLCEEVTTHTSLRGYLPAVGAQVATVWLSPKPP HDAIVSPGVVIESETEKCVARGTVSMTGSSGAPVVDVFGEHIVGLHLTSNMRDGSRVSGF IPSRKLVSLFAEMWVEHARVLPSA

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmxM.08_29.277080 SASKDSTYDV0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India