_IDPredictionOTHERSPmTPCS_Position
LmxM.09.0240OTHER0.7612470.0589280.179825
No Results
  • Fasta :-

    >LmxM.09.0240 MRLRLLPRCRRVTTSYLLPIMSATTASSRRKQHRESLKEESMISFEMELDEAIELPFDVS PVAPTDSAPSPPFGRKKIAMPASRTASEKRVAWSNGSTASLGLAVCGNVNELPNTAATAD GVTSPDVVPPNAAAKTYSAAAPSRMVTWKDTSASQRRAEAQASRQDDFNPMILCPLQNLG NTCYFNAGVQLLVNCPALVYAVRNSPFARRAQSNIPLTAHAVPMPPAAAPTATTKLCLKG GAATHALFQEFSALLARMEMGCAAGERAISPMCALDSLAQAYPQFEGRSQQDAAEMMTSL LASLEEEGGQYVEVTQLLHSFEEDAAALRQGVTSSASSPVGPELMGRVRTSATSSLLEAE AAPSASSHRRDYSEPYNIEEYSQPSLLSSTSEDTFLPGPRSAHFFAVLRLMERVNRDNEL LERRVKQRQGVAYTSPFKPPRLHFNPLLDGFRGYTLSEVECHNCRAVSRVVSAFNGLLLD VPTAKQRRRYALAHPNVLRRVDFDGELRQVKKPFRMTWWNPLSLCVAAWRQLKRFFQDPF PYPLWLDECLDIHFEPEVLRGCNKYRCESCDTTTDATKSETLLALPEYLLIHMKRFEAGR FFNSKKSDSVFFPTSWRPLTNTQARQSPINTDDAPPALPEYLDLRHYLHSSVASFAEPTP PCLWSADNEPHQQRRASRDDASSPTSSIPTTYTLDGIVNHHGGYDGGHYTVFLYKATEER QAWVYISDDEVDQAEEVVATDTEYVLLYRRQPLVQAAPESDDGEQLRRKACYYLSLSSPS CPAANTAAATTAGPHAKKLHSRCPFSSSSADGAASAPPDAATAATEPRVYISRMWLQRVA FMHEPGPIVNRLCYCRPEDQGRVSMYRTIFPATVKVPAEVPHVHGPPVSWFYVPITQKDY DIFYNAFGGNAAVTASEYESLRAMQDKFCAAIDLAERQRGRSARPAPRS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/818 Sequence name : 818 Sequence length : 949 VALUES OF COMPUTED PARAMETERS Coef20 : 5.144 CoefTot : 1.250 ChDiff : -2 ZoneTo : 34 KR : 9 DE : 0 CleavSite : 14 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.424 1.312 0.145 0.494 MesoH : 0.059 0.463 -0.200 0.247 MuHd_075 : 25.044 14.461 5.788 5.253 MuHd_095 : 35.629 24.021 9.287 8.161 MuHd_100 : 35.482 21.566 9.705 8.580 MuHd_105 : 35.152 18.257 9.216 8.461 Hmax_075 : 1.663 14.117 3.636 0.901 Hmax_095 : 15.225 16.363 3.860 5.110 Hmax_100 : 14.000 16.800 4.275 5.200 Hmax_105 : 11.000 13.300 3.425 4.632 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0341 0.9659 DFMC : 0.0168 0.9832 This protein is probably imported in mitochondria. f(Ser) = 0.1176 f(Arg) = 0.2353 CMi = 0.29455 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 949 LmxM.09.0240 MRLRLLPRCRRVTTSYLLPIMSATTASSRRKQHRESLKEESMISFEMELDEAIELPFDVSPVAPTDSAPSPPFGRKKIAM 80 PASRTASEKRVAWSNGSTASLGLAVCGNVNELPNTAATADGVTSPDVVPPNAAAKTYSAAAPSRMVTWKDTSASQRRAEA 160 QASRQDDFNPMILCPLQNLGNTCYFNAGVQLLVNCPALVYAVRNSPFARRAQSNIPLTAHAVPMPPAAAPTATTKLCLKG 240 GAATHALFQEFSALLARMEMGCAAGERAISPMCALDSLAQAYPQFEGRSQQDAAEMMTSLLASLEEEGGQYVEVTQLLHS 320 FEEDAAALRQGVTSSASSPVGPELMGRVRTSATSSLLEAEAAPSASSHRRDYSEPYNIEEYSQPSLLSSTSEDTFLPGPR 400 SAHFFAVLRLMERVNRDNELLERRVKQRQGVAYTSPFKPPRLHFNPLLDGFRGYTLSEVECHNCRAVSRVVSAFNGLLLD 480 VPTAKQRRRYALAHPNVLRRVDFDGELRQVKKPFRMTWWNPLSLCVAAWRQLKRFFQDPFPYPLWLDECLDIHFEPEVLR 560 GCNKYRCESCDTTTDATKSETLLALPEYLLIHMKRFEAGRFFNSKKSDSVFFPTSWRPLTNTQARQSPINTDDAPPALPE 640 YLDLRHYLHSSVASFAEPTPPCLWSADNEPHQQRRASRDDASSPTSSIPTTYTLDGIVNHHGGYDGGHYTVFLYKATEER 720 QAWVYISDDEVDQAEEVVATDTEYVLLYRRQPLVQAAPESDDGEQLRRKACYYLSLSSPSCPAANTAAATTAGPHAKKLH 800 SRCPFSSSSADGAASAPPDAATAATEPRVYISRMWLQRVAFMHEPGPIVNRLCYCRPEDQGRVSMYRTIFPATVKVPAEV 880 PHVHGPPVSWFYVPITQKDYDIFYNAFGGNAAVTASEYESLRAMQDKFCAAIDLAERQRGRSARPAPRS 960 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................................................................................ 880 ...............................................................P..... 960 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.09.0240 2 -----MR|LR 0.061 . LmxM.09.0240 4 ---MRLR|LL 0.077 . LmxM.09.0240 8 RLRLLPR|CR 0.080 . LmxM.09.0240 10 RLLPRCR|RV 0.102 . LmxM.09.0240 11 LLPRCRR|VT 0.289 . LmxM.09.0240 29 ATTASSR|RK 0.071 . LmxM.09.0240 30 TTASSRR|KQ 0.139 . LmxM.09.0240 31 TASSRRK|QH 0.123 . LmxM.09.0240 34 SRRKQHR|ES 0.210 . LmxM.09.0240 38 QHRESLK|EE 0.070 . LmxM.09.0240 75 PSPPFGR|KK 0.089 . LmxM.09.0240 76 SPPFGRK|KI 0.074 . LmxM.09.0240 77 PPFGRKK|IA 0.157 . LmxM.09.0240 84 IAMPASR|TA 0.125 . LmxM.09.0240 89 SRTASEK|RV 0.091 . LmxM.09.0240 90 RTASEKR|VA 0.249 . LmxM.09.0240 135 PPNAAAK|TY 0.087 . LmxM.09.0240 144 SAAAPSR|MV 0.180 . LmxM.09.0240 149 SRMVTWK|DT 0.171 . LmxM.09.0240 156 DTSASQR|RA 0.155 . LmxM.09.0240 157 TSASQRR|AE 0.173 . LmxM.09.0240 164 AEAQASR|QD 0.086 . LmxM.09.0240 203 ALVYAVR|NS 0.077 . LmxM.09.0240 209 RNSPFAR|RA 0.158 . LmxM.09.0240 210 NSPFARR|AQ 0.159 . LmxM.09.0240 235 APTATTK|LC 0.065 . LmxM.09.0240 239 TTKLCLK|GG 0.058 . LmxM.09.0240 257 FSALLAR|ME 0.091 . LmxM.09.0240 267 GCAAGER|AI 0.110 . LmxM.09.0240 288 YPQFEGR|SQ 0.175 . LmxM.09.0240 329 EDAAALR|QG 0.072 . LmxM.09.0240 347 GPELMGR|VR 0.079 . LmxM.09.0240 349 ELMGRVR|TS 0.075 . LmxM.09.0240 369 PSASSHR|RD 0.084 . LmxM.09.0240 370 SASSHRR|DY 0.338 . LmxM.09.0240 400 TFLPGPR|SA 0.120 . LmxM.09.0240 409 HFFAVLR|LM 0.080 . LmxM.09.0240 413 VLRLMER|VN 0.079 . LmxM.09.0240 416 LMERVNR|DN 0.317 . LmxM.09.0240 423 DNELLER|RV 0.091 . LmxM.09.0240 424 NELLERR|VK 0.100 . LmxM.09.0240 426 LLERRVK|QR 0.108 . LmxM.09.0240 428 ERRVKQR|QG 0.118 . LmxM.09.0240 438 AYTSPFK|PP 0.053 . LmxM.09.0240 441 SPFKPPR|LH 0.095 . LmxM.09.0240 452 PLLDGFR|GY 0.077 . LmxM.09.0240 465 VECHNCR|AV 0.136 . LmxM.09.0240 469 NCRAVSR|VV 0.138 . LmxM.09.0240 485 LDVPTAK|QR 0.062 . LmxM.09.0240 487 VPTAKQR|RR 0.075 . LmxM.09.0240 488 PTAKQRR|RY 0.119 . LmxM.09.0240 489 TAKQRRR|YA 0.233 . LmxM.09.0240 499 AHPNVLR|RV 0.099 . LmxM.09.0240 500 HPNVLRR|VD 0.243 . LmxM.09.0240 508 DFDGELR|QV 0.091 . LmxM.09.0240 511 GELRQVK|KP 0.100 . LmxM.09.0240 512 ELRQVKK|PF 0.095 . LmxM.09.0240 515 QVKKPFR|MT 0.099 . LmxM.09.0240 530 LCVAAWR|QL 0.084 . LmxM.09.0240 533 AAWRQLK|RF 0.099 . LmxM.09.0240 534 AWRQLKR|FF 0.263 . LmxM.09.0240 560 FEPEVLR|GC 0.087 . LmxM.09.0240 564 VLRGCNK|YR 0.066 . LmxM.09.0240 566 RGCNKYR|CE 0.107 . LmxM.09.0240 578 TTTDATK|SE 0.060 . LmxM.09.0240 594 YLLIHMK|RF 0.068 . LmxM.09.0240 595 LLIHMKR|FE 0.228 . LmxM.09.0240 600 KRFEAGR|FF 0.106 . LmxM.09.0240 605 GRFFNSK|KS 0.074 . LmxM.09.0240 606 RFFNSKK|SD 0.212 . LmxM.09.0240 617 FFPTSWR|PL 0.073 . LmxM.09.0240 625 LTNTQAR|QS 0.112 . LmxM.09.0240 645 PEYLDLR|HY 0.073 . LmxM.09.0240 674 NEPHQQR|RA 0.106 . LmxM.09.0240 675 EPHQQRR|AS 0.211 . LmxM.09.0240 678 QQRRASR|DD 0.369 . LmxM.09.0240 715 YTVFLYK|AT 0.074 . LmxM.09.0240 720 YKATEER|QA 0.111 . LmxM.09.0240 749 EYVLLYR|RQ 0.065 . LmxM.09.0240 750 YVLLYRR|QP 0.073 . LmxM.09.0240 767 DDGEQLR|RK 0.076 . LmxM.09.0240 768 DGEQLRR|KA 0.127 . LmxM.09.0240 769 GEQLRRK|AC 0.073 . LmxM.09.0240 797 TAGPHAK|KL 0.078 . LmxM.09.0240 798 AGPHAKK|LH 0.099 . LmxM.09.0240 802 AKKLHSR|CP 0.089 . LmxM.09.0240 828 TAATEPR|VY 0.090 . LmxM.09.0240 833 PRVYISR|MW 0.093 . LmxM.09.0240 838 SRMWLQR|VA 0.154 . LmxM.09.0240 851 PGPIVNR|LC 0.071 . LmxM.09.0240 856 NRLCYCR|PE 0.114 . LmxM.09.0240 862 RPEDQGR|VS 0.083 . LmxM.09.0240 867 GRVSMYR|TI 0.119 . LmxM.09.0240 875 IFPATVK|VP 0.056 . LmxM.09.0240 898 YVPITQK|DY 0.066 . LmxM.09.0240 922 SEYESLR|AM 0.094 . LmxM.09.0240 927 LRAMQDK|FC 0.098 . LmxM.09.0240 937 AIDLAER|QR 0.071 . LmxM.09.0240 939 DLAERQR|GR 0.087 . LmxM.09.0240 941 AERQRGR|SA 0.217 . LmxM.09.0240 944 QRGRSAR|PA 0.574 *ProP* LmxM.09.0240 948 SARPAPR|S- 0.161 . ____________________________^_________________
  • Fasta :-

    >LmxM.09.0240 ATGCGCCTGCGCCTGCTGCCACGGTGTCGCCGAGTCACCACATCTTACCTGCTGCCCATC ATGTCCGCCACAACAGCGTCGTCGCGGCGGAAACAGCACCGCGAGTCGCTCAAGGAGGAG TCGATGATCTCGTTCGAGATGGAGCTCGACGAGGCGATTGAGCTGCCGTTCGACGTGAGC CCCGTCGCGCCGACAGACTCGGCGCCGAGCCCGCCGTTTGGGAGAAAGAAAATTGCAATG CCTGCTTCACGGACCGCTTCGGAGAAGAGGGTGGCATGGAGCAACGGCAGCACCGCCAGC CTCGGACTCGCCGTGTGCGGCAACGTTAATGAGCTCCCAAACACCGCCGCGACCGCCGAC GGCGTCACCTCTCCCGACGTCGTGCCACCCAATGCAGCTGCCAAAACCTACTCGGCAGCG GCGCCGTCACGTATGGTGACGTGGAAGGACACCAGCGCGTCTCAGCGGCGTGCCGAGGCG CAGGCGAGCCGCCAAGACGACTTCAACCCCATGATTCTGTGCCCGCTGCAGAACCTGGGC AATACGTGCTACTTCAACGCGGGTGTGCAACTGCTCGTGAACTGCCCCGCCCTCGTCTAT GCAGTGCGCAACTCGCCGTTTGCGCGGAGGGCACAGAGCAACATCCCCCTCACCGCCCAC GCCGTACCGATGCCGCCGGCTGCAGCGCCAACTGCAACGACGAAGCTGTGTCTGAAAGGG GGTGCCGCCACCCACGCACTCTTCCAGGAGTTCTCCGCCCTGCTCGCCCGCATGGAAATG GGATGTGCAGCCGGTGAGAGGGCGATCTCGCCCATGTGCGCGCTCGACTCCCTCGCGCAG GCGTATCCGCAGTTCGAGGGTCGAAGCCAGCAAGATGCAGCAGAGATGATGACGTCGCTG CTCGCCAGCTTGGAGGAGGAGGGCGGTCAGTACGTGGAGGTGACACAGCTGCTACACTCG TTTGAAGAGGATGCCGCGGCGCTGCGGCAGGGCGTGACGTCCTCGGCTTCCTCTCCCGTG GGGCCGGAGCTAATGGGGCGGGTTCGCACGAGTGCCACCTCGTCTCTCTTGGAAGCCGAG GCCGCGCCCTCCGCATCGTCGCATCGCCGTGATTACAGCGAGCCCTACAACATCGAGGAG TACTCCCAGCCATCGCTGCTCTCCTCCACCAGTGAGGACACCTTCCTGCCGGGTCCGCGC AGCGCGCACTTCTTCGCCGTACTGCGGCTGATGGAACGAGTGAATCGGGACAACGAACTA CTTGAGCGGCGTGTGAAGCAGCGGCAAGGAGTTGCCTACACCAGCCCCTTCAAGCCCCCG CGGCTGCACTTCAACCCGCTGCTGGACGGCTTCCGCGGGTATACGCTGTCGGAGGTGGAG TGCCATAACTGCCGCGCGGTATCGCGCGTGGTGAGCGCCTTCAATGGGTTGCTGCTGGAT GTGCCGACGGCAAAACAGCGCCGGCGCTACGCGTTGGCGCACCCGAATGTGCTGCGCCGC GTCGACTTCGATGGGGAGCTGCGGCAGGTGAAGAAGCCGTTTCGGATGACCTGGTGGAAC CCCCTCTCCCTGTGCGTGGCGGCGTGGAGGCAGCTGAAGCGGTTTTTCCAGGACCCGTTC CCGTACCCGCTGTGGCTGGACGAGTGTCTCGACATTCACTTCGAGCCGGAGGTGCTGCGC GGGTGTAACAAGTACCGCTGCGAGTCCTGCGACACCACCACCGACGCCACCAAGTCGGAG ACGCTTCTTGCCCTGCCCGAGTACCTGCTCATTCACATGAAGCGCTTCGAGGCCGGCCGC TTCTTCAACAGCAAAAAGTCGGACTCCGTCTTCTTTCCCACCTCGTGGCGGCCGCTCACG AACACGCAGGCGAGGCAGTCACCCATCAACACGGACGACGCGCCGCCAGCGCTGCCAGAG TACCTCGACCTACGCCACTACCTGCACAGCAGCGTCGCATCCTTCGCAGAGCCGACCCCG CCCTGTCTGTGGAGTGCCGACAACGAGCCCCACCAGCAGCGTCGCGCGAGCAGGGACGAT GCCAGCAGCCCCACCAGCTCCATCCCAACCACCTACACGCTAGACGGCATTGTCAACCAC CACGGCGGCTACGACGGCGGCCATTACACCGTCTTCCTCTACAAGGCGACGGAGGAGCGG CAGGCGTGGGTGTACATCAGTGACGATGAGGTGGATCAAGCGGAGGAGGTAGTGGCAACG GATACCGAGTACGTCCTGCTGTACCGCCGCCAACCCCTCGTGCAGGCGGCGCCAGAGTCG GACGATGGAGAACAGCTGCGCCGAAAGGCGTGCTACTACCTCTCTCTGTCATCCCCTTCC TGCCCTGCCGCCAACACCGCGGCAGCGACGACCGCCGGTCCTCATGCCAAGAAGCTTCAT AGCAGGTGCCCCTTCTCGTCCTCTTCGGCAGACGGCGCGGCTAGTGCGCCACCTGACGCG GCAACCGCGGCGACCGAGCCGCGGGTGTACATCTCGCGCATGTGGCTTCAGCGCGTCGCC TTCATGCACGAGCCGGGCCCGATTGTGAATCGCCTGTGCTACTGCCGTCCAGAGGATCAG GGGCGGGTGAGCATGTATCGGACCATCTTTCCAGCCACAGTGAAGGTGCCGGCGGAGGTG CCCCACGTCCACGGCCCGCCGGTGAGCTGGTTCTACGTGCCCATCACTCAGAAGGACTAC GACATTTTTTACAACGCGTTTGGCGGTAACGCAGCCGTGACGGCGAGCGAATACGAGTCC CTGCGTGCCATGCAGGACAAGTTCTGCGCCGCCATTGATTTAGCGGAGCGGCAGCGAGGC CGCTCCGCTCGCCCTGCTCCCCGGAGCTGA
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  • Fasta :-

    MRLRLLPRCRRVTTSYLLPIMSATTASSRRKQHRESLKEESMISFEMELDEAIELPFDVS PVAPTDSAPSPPFGRKKIAMPASRTASEKRVAWSNGSTASLGLAVCGNVNELPNTAATAD GVTSPDVVPPNAAAKTYSAAAPSRMVTWKDTSASQRRAEAQASRQDDFNPMILCPLQNLG NTCYFNAGVQLLVNCPALVYAVRNSPFARRAQSNIPLTAHAVPMPPAAAPTATTKLCLKG GAATHALFQEFSALLARMEMGCAAGERAISPMCALDSLAQAYPQFEGRSQQDAAEMMTSL LASLEEEGGQYVEVTQLLHSFEEDAAALRQGVTSSASSPVGPELMGRVRTSATSSLLEAE AAPSASSHRRDYSEPYNIEEYSQPSLLSSTSEDTFLPGPRSAHFFAVLRLMERVNRDNEL LERRVKQRQGVAYTSPFKPPRLHFNPLLDGFRGYTLSEVECHNCRAVSRVVSAFNGLLLD VPTAKQRRRYALAHPNVLRRVDFDGELRQVKKPFRMTWWNPLSLCVAAWRQLKRFFQDPF PYPLWLDECLDIHFEPEVLRGCNKYRCESCDTTTDATKSETLLALPEYLLIHMKRFEAGR FFNSKKSDSVFFPTSWRPLTNTQARQSPINTDDAPPALPEYLDLRHYLHSSVASFAEPTP PCLWSADNEPHQQRRASRDDASSPTSSIPTTYTLDGIVNHHGGYDGGHYTVFLYKATEER QAWVYISDDEVDQAEEVVATDTEYVLLYRRQPLVQAAPESDDGEQLRRKACYYLSLSSPS CPAANTAAATTAGPHAKKLHSRCPFSSSSADGAASAPPDAATAATEPRVYISRMWLQRVA FMHEPGPIVNRLCYCRPEDQGRVSMYRTIFPATVKVPAEVPHVHGPPVSWFYVPITQKDY DIFYNAFGGNAAVTASEYESLRAMQDKFCAAIDLAERQRGRSARPAPRS

    No Results
No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.09.024087 SSRTASEKRV0.995unspLmxM.09.024087 SSRTASEKRV0.995unspLmxM.09.024087 SSRTASEKRV0.995unspLmxM.09.0240154 SDTSASQRRA0.996unspLmxM.09.0240270 SERAISPMCA0.993unspLmxM.09.0240303 SSLLASLEEE0.995unspLmxM.09.0240320 SQLLHSFEED0.997unspLmxM.09.0240338 SSSASSPVGP0.997unspLmxM.09.0240351 SRVRTSATSS0.991unspLmxM.09.0240367 SPSASSHRRD0.993unspLmxM.09.0240627 SQARQSPINT0.998unspLmxM.09.0240677 SQRRASRDDA0.998unspLmxM.09.0240683 SDDASSPTSS0.996unspLmxM.09.0240864 SQGRVSMYRT0.997unspLmxM.09.0240942 SQRGRSARPA0.997unspLmxM.09.024036 SQHRESLKEE0.998unspLmxM.09.024070 SDSAPSPPFG0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India