LmxM.10.0405 | GP63, leishmanolysin

_IDPredictionOTHERSPmTPCS_Position
LmxM.10.0405OTHER0.9409680.0322550.026777
No Results

  • Fasta :-

    >LmxM.10.0405 MSVDSSSTHRNRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGAPQHRCIHDAMQARVRQS VAAQRMAPSAVSAVGLPHVTLDAADTAAGADPSTGTPRNVVRAANWGALRIAVSAEDLTD PAYHCARVGQRISARDGRFAVCTAEDILTDEKRDILVKHLVPQALQLHRERLKVRQVQGK WKVTDMAADVCSYFKVPPAHVTGGVSNTDFVLYVASVPSEESVLAWAMTCQVFPDGHPAV GVINIPAANIASRYDQLVTRVVAHEMAHALGFSGTFFEAVGIVQEVPGIRGKTFTVAVIT SSTAVAKAREQYGCNSLEYLEIEDQGGAGSAGSHIKMRNAKDELMAPAASAGYYTALTMA VFQDLGFYQADFSKAEEMPWGRNVRCAFLSEKCMAKNVTKWPAMFCNESAATIRCPTDRL RVGTCGITAYNTSLATYWQYFTNASLGGYSPFLDYCPFVVGYRNGSCNQDASTTPDLLAA FNVFSEAARCIDGAFTPKNRTAADGYYTALCANVKCDTATRTYSVQVRGSNGYANCTPGL RVKLSSVSDAFEKGGYVTCPPYVEVCQGNVKAAKDFAGDTDSSSSADDAADKEAMQRWSD RMAALATATTLLLGMVLSLMALLVVRLLLTSSPWCCCRLGGLPT
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/312 Sequence name : 312 Sequence length : 644 VALUES OF COMPUTED PARAMETERS Coef20 : 5.080 CoefTot : 1.129 ChDiff : 3 ZoneTo : 81 KR : 8 DE : 2 CleavSite : 67 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.341 2.524 0.408 0.771 MesoH : 0.119 0.659 -0.198 0.346 MuHd_075 : 33.291 24.746 10.885 6.645 MuHd_095 : 34.143 19.707 9.810 6.632 MuHd_100 : 31.247 16.869 8.593 6.757 MuHd_105 : 30.307 19.095 8.802 7.375 Hmax_075 : 13.417 21.117 4.025 6.580 Hmax_095 : 6.300 11.300 1.033 2.765 Hmax_100 : 8.500 8.000 0.889 3.580 Hmax_105 : 8.983 14.800 -0.453 4.500 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6647 0.3353 DFMC : 0.1888 0.8112 This protein is probably imported in mitochondria. f(Ser) = 0.0864 f(Arg) = 0.0988 CMi = 0.41494 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 644 LmxM.10.0405 MSVDSSSTHRNRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGAPQHRCIHDAMQARVRQSVAAQRMAPSAVSAVGLPHVT 80 LDAADTAAGADPSTGTPRNVVRAANWGALRIAVSAEDLTDPAYHCARVGQRISARDGRFAVCTAEDILTDEKRDILVKHL 160 VPQALQLHRERLKVRQVQGKWKVTDMAADVCSYFKVPPAHVTGGVSNTDFVLYVASVPSEESVLAWAMTCQVFPDGHPAV 240 GVINIPAANIASRYDQLVTRVVAHEMAHALGFSGTFFEAVGIVQEVPGIRGKTFTVAVITSSTAVAKAREQYGCNSLEYL 320 EIEDQGGAGSAGSHIKMRNAKDELMAPAASAGYYTALTMAVFQDLGFYQADFSKAEEMPWGRNVRCAFLSEKCMAKNVTK 400 WPAMFCNESAATIRCPTDRLRVGTCGITAYNTSLATYWQYFTNASLGGYSPFLDYCPFVVGYRNGSCNQDASTTPDLLAA 480 FNVFSEAARCIDGAFTPKNRTAADGYYTALCANVKCDTATRTYSVQVRGSNGYANCTPGLRVKLSSVSDAFEKGGYVTCP 560 PYVEVCQGNVKAAKDFAGDTDSSSSADDAADKEAMQRWSDRMAALATATTLLLGMVLSLMALLVVRLLLTSSPWCCCRLG 640 GLPT 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.10.0405 10 DSSSTHR|NR 0.089 . LmxM.10.0405 12 SSTHRNR|CV 0.137 . LmxM.10.0405 17 NRCVAAR|LV 0.142 . LmxM.10.0405 20 VAARLVR|LA 0.267 . LmxM.10.0405 47 AGAPQHR|CI 0.154 . LmxM.10.0405 56 HDAMQAR|VR 0.099 . LmxM.10.0405 58 AMQARVR|QS 0.109 . LmxM.10.0405 65 QSVAAQR|MA 0.102 . LmxM.10.0405 98 PSTGTPR|NV 0.115 . LmxM.10.0405 102 TPRNVVR|AA 0.169 . LmxM.10.0405 110 ANWGALR|IA 0.088 . LmxM.10.0405 127 PAYHCAR|VG 0.073 . LmxM.10.0405 131 CARVGQR|IS 0.081 . LmxM.10.0405 135 GQRISAR|DG 0.140 . LmxM.10.0405 138 ISARDGR|FA 0.387 . LmxM.10.0405 152 DILTDEK|RD 0.053 . LmxM.10.0405 153 ILTDEKR|DI 0.203 . LmxM.10.0405 158 KRDILVK|HL 0.067 . LmxM.10.0405 169 QALQLHR|ER 0.074 . LmxM.10.0405 171 LQLHRER|LK 0.075 . LmxM.10.0405 173 LHRERLK|VR 0.063 . LmxM.10.0405 175 RERLKVR|QV 0.155 . LmxM.10.0405 180 VRQVQGK|WK 0.077 . LmxM.10.0405 182 QVQGKWK|VT 0.073 . LmxM.10.0405 195 DVCSYFK|VP 0.055 . LmxM.10.0405 253 AANIASR|YD 0.101 . LmxM.10.0405 260 YDQLVTR|VV 0.114 . LmxM.10.0405 290 QEVPGIR|GK 0.074 . LmxM.10.0405 292 VPGIRGK|TF 0.070 . LmxM.10.0405 307 SSTAVAK|AR 0.082 . LmxM.10.0405 309 TAVAKAR|EQ 0.112 . LmxM.10.0405 336 SAGSHIK|MR 0.072 . LmxM.10.0405 338 GSHIKMR|NA 0.228 . LmxM.10.0405 341 IKMRNAK|DE 0.194 . LmxM.10.0405 374 YQADFSK|AE 0.060 . LmxM.10.0405 382 EEMPWGR|NV 0.117 . LmxM.10.0405 385 PWGRNVR|CA 0.374 . LmxM.10.0405 392 CAFLSEK|CM 0.058 . LmxM.10.0405 396 SEKCMAK|NV 0.098 . LmxM.10.0405 400 MAKNVTK|WP 0.060 . LmxM.10.0405 414 ESAATIR|CP 0.091 . LmxM.10.0405 419 IRCPTDR|LR 0.080 . LmxM.10.0405 421 CPTDRLR|VG 0.077 . LmxM.10.0405 463 PFVVGYR|NG 0.075 . LmxM.10.0405 489 VFSEAAR|CI 0.154 . LmxM.10.0405 498 DGAFTPK|NR 0.064 . LmxM.10.0405 500 AFTPKNR|TA 0.111 . LmxM.10.0405 515 ALCANVK|CD 0.061 . LmxM.10.0405 521 KCDTATR|TY 0.090 . LmxM.10.0405 528 TYSVQVR|GS 0.132 . LmxM.10.0405 541 NCTPGLR|VK 0.059 . LmxM.10.0405 543 TPGLRVK|LS 0.068 . LmxM.10.0405 553 VSDAFEK|GG 0.059 . LmxM.10.0405 571 VCQGNVK|AA 0.063 . LmxM.10.0405 574 GNVKAAK|DF 0.081 . LmxM.10.0405 592 ADDAADK|EA 0.061 . LmxM.10.0405 597 DKEAMQR|WS 0.083 . LmxM.10.0405 601 MQRWSDR|MA 0.141 . LmxM.10.0405 626 MALLVVR|LL 0.073 . LmxM.10.0405 638 SPWCCCR|LG 0.082 . ____________________________^_________________

  • Fasta :-

    >LmxM.10.0405 ATGTCCGTCGACAGCAGCAGCACGCACCGGAACCGCTGCGTCGCCGCGCGCCTGGTGCGC CTCGCGGCTGCCGGCGCCGCAGTCACCGTCGCTGTCGGCACCGCGGCCGCGTGGGCACAC GCCGGTGCGCCCCAGCACCGCTGCATCCACGACGCGATGCAGGCCCGCGTGCGGCAGTCG GTGGCGGCTCAGCGCATGGCCCCCAGCGCGGTGTCCGCGGTGGGCCTGCCGCACGTGACT CTCGACGCCGCGGACACCGCTGCCGGCGCCGATCCCAGCACGGGCACCCCGCGCAACGTT GTGCGCGCCGCGAACTGGGGCGCGCTGCGCATCGCCGTCTCCGCCGAAGACCTCACCGAC CCCGCCTACCACTGCGCTCGTGTCGGGCAGCGTATCAGCGCGCGCGACGGCCGTTTCGCC GTCTGCACCGCCGAGGACATCCTCACCGACGAGAAGCGCGACATCCTCGTCAAACACCTC GTCCCGCAGGCGCTGCAGCTGCACAGGGAGCGCCTGAAGGTGCGGCAGGTGCAGGGCAAG TGGAAGGTGACAGACATGGCGGCCGACGTGTGCAGCTACTTCAAGGTGCCGCCGGCGCAC GTCACCGGAGGCGTGAGCAACACCGACTTCGTGTTGTACGTCGCCTCCGTGCCGAGCGAG GAGAGTGTGCTGGCGTGGGCCATGACCTGCCAGGTGTTCCCTGACGGCCACCCAGCTGTC GGCGTCATCAACATCCCCGCAGCGAACATTGCGTCGCGGTACGACCAGCTCGTCACGCGT GTCGTCGCGCACGAGATGGCGCACGCGCTGGGCTTCAGCGGCACATTCTTTGAGGCCGTC GGCATCGTGCAAGAGGTGCCGGGAATACGCGGCAAGACCTTTACAGTAGCTGTGATCACC AGCAGCACGGCGGTGGCGAAGGCGCGTGAGCAGTACGGCTGCAACAGCTTGGAGTATCTG GAGATTGAGGACCAGGGCGGTGCGGGCTCCGCCGGGTCGCATATCAAGATGCGCAACGCC AAGGACGAGCTCATGGCGCCTGCCGCATCTGCCGGGTACTACACCGCCCTGACCATGGCC GTCTTCCAGGACCTCGGCTTCTACCAGGCGGACTTCAGCAAGGCCGAGGAGATGCCGTGG GGCCGGAACGTCCGCTGCGCCTTCCTCAGCGAGAAGTGCATGGCGAAGAACGTCACGAAG TGGCCGGCGATGTTCTGCAATGAGAGTGCGGCCACCATACGGTGCCCCACCGACCGTCTG AGAGTCGGAACTTGTGGTATAACAGCATACAATACTTCGTTGGCGACGTACTGGCAGTAC TTCACCAATGCGTCCCTCGGGGGCTACTCGCCATTCCTGGACTACTGCCCGTTTGTTGTT GGCTACAGGAATGGCTCGTGCAATCAGGATGCGTCGACGACACCGGACCTTCTCGCTGCG TTCAACGTCTTCTCCGAGGCCGCGCGGTGCATCGATGGCGCCTTCACGCCGAAGAACAGA ACCGCTGCGGATGGATACTACACCGCCCTGTGCGCCAACGTGAAGTGCGACACGGCCACG CGCACGTACAGCGTCCAGGTGCGCGGCAGCAACGGCTACGCCAACTGCACGCCGGGCCTC AGAGTTAAGTTGAGCAGCGTGAGCGACGCCTTCGAGAAGGGCGGCTACGTCACGTGCCCG CCGTACGTGGAGGTGTGCCAGGGCAACGTCAAAGCTGCCAAGGACTTTGCAGGCGACACC GACAGCTCCAGCAGCGCCGATGACGCTGCCGACAAAGAGGCGATGCAGCGGTGGAGTGAC AGGATGGCCGCCTTGGCTACTGCGACGACGCTGCTGCTAGGAATGGTGCTCTCTCTCATG GCACTCCTCGTGGTGCGGCTACTCCTTACCAGCTCCCCCTGGTGCTGCTGCAGACTGGGG GGGCTCCCGACGTGA
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  • Fasta :-

    MSVDSSSTHRNRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGAPQHRCIHDAMQARVRQS VAAQRMAPSAVSAVGLPHVTLDAADTAAGADPSTGTPRNVVRAANWGALRIAVSAEDLTD PAYHCARVGQRISARDGRFAVCTAEDILTDEKRDILVKHLVPQALQLHRERLKVRQVQGK WKVTDMAADVCSYFKVPPAHVTGGVSNTDFVLYVASVPSEESVLAWAMTCQVFPDGHPAV GVINIPAANIASRYDQLVTRVVAHEMAHALGFSGTFFEAVGIVQEVPGIRGKTFTVAVIT SSTAVAKAREQYGCNSLEYLEIEDQGGAGSAGSHIKMRNAKDELMAPAASAGYYTALTMA VFQDLGFYQADFSKAEEMPWGRNVRCAFLSEKCMAKNVTKWPAMFCNESAATIRCPTDRL RVGTCGITAYNTSLATYWQYFTNASLGGYSPFLDYCPFVVGYRNGSCNQDASTTPDLLAA FNVFSEAARCIDGAFTPKNRTAADGYYTALCANVKCDTATRTYSVQVRGSNGYANCTPGL RVKLSSVSDAFEKGGYVTCPPYVEVCQGNVKAAKDFAGDTDSSSSADDAADKEAMQRWSD RMAALATATTLLLGMVLSLMALLVVRLLLTSSPWCCCRLGGLPT

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.10.0405114 SRIAVSAEDL0.991unspLmxM.10.0405114 SRIAVSAEDL0.991unspLmxM.10.0405114 SRIAVSAEDL0.991unspLmxM.10.0405133 SGQRISARDG0.997unspLmxM.10.0405546 SVKLSSVSDA0.997unspLmxM.10.0405584 STDSSSSADD0.991unspLmxM.10.0405585 SDSSSSADDA0.997unspLmxM.10.04057 SVDSSSTHRN0.992unspLmxM.10.040596 TPSTGTPRNV0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India