LmxM.10.0465 | GP63, leishmanolysin

_IDPredictionOTHERSPmTPCS_Position
LmxM.10.0465OTHER0.8886290.0724100.038961
No Results

  • Fasta :-

    >LmxM.10.0465 MPVDSSSTHRHRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGAPQHRCIHDAMQARVLQS VAAQRMAPSAVSAVGLPYVSVVPVENASTLDYSLSDSTSPGVVRAANWGALRIAVSAEDL TDPAYHCARVGQRVNNHAGDIVTCTAEDILTDEKRDTLVKHLVPQALQLHRERLKVRQVQ GKWKVTGMAADVCSYFKVPPEHITEGVTNTDFVLYVASVPSEESVLAWAMTCQVFPDGHP AVGVINIPAANIAARYDQLVTRVVTHEMAHALGFSDTFFEAVGIVQEVPHVRGKDFNVSV ITSSTVVAKAREQYGCCCLWYLEIEDQGGAGSAGSHIKMRNAQDELMAPAASAGYYTALT MAVFQDLGFYQADFSKAEAMPWGRNAGCAFLSEKCMAKNVTKWPAMFCNESADAIRCPTD RLSLGTCGITAYNTSLATYWQYFTNASLGGDSAFLDYCPTVVDYSDGSCNQDASTAPDLF AAFNVFSETARCIDGAFTPKNRTAADGYYGGLCANVKCDTVTRTYSVQVRGSNGYVNCTP GLRVKLSSVSDAFEKGGYVTCPPYVEVCQGNVKAAKDFAGDTDSSSSADDAADKEAMQRW SDRVAALATATTLLLGMVLSLVTLLVVRLLLTSSPWCCCRLGGLPT
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/48 Sequence name : 48 Sequence length : 646 VALUES OF COMPUTED PARAMETERS Coef20 : 4.722 CoefTot : 0.465 ChDiff : -10 ZoneTo : 84 KR : 7 DE : 2 CleavSite : 67 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.271 2.512 0.422 0.758 MesoH : 0.092 0.703 -0.177 0.326 MuHd_075 : 41.775 28.545 12.492 8.922 MuHd_095 : 29.922 17.145 8.208 6.986 MuHd_100 : 31.247 16.869 8.593 7.127 MuHd_105 : 30.307 18.547 8.802 7.098 Hmax_075 : 16.333 17.850 4.571 5.483 Hmax_095 : 9.713 9.362 1.268 3.098 Hmax_100 : 8.500 8.000 0.889 3.960 Hmax_105 : 8.983 7.467 -0.453 4.090 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7076 0.2924 DFMC : 0.2387 0.7613 This protein is probably imported in mitochondria. f(Ser) = 0.0833 f(Arg) = 0.0833 CMi = 0.44643 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 646 LmxM.10.0465 MPVDSSSTHRHRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGAPQHRCIHDAMQARVLQSVAAQRMAPSAVSAVGLPYVS 80 VVPVENASTLDYSLSDSTSPGVVRAANWGALRIAVSAEDLTDPAYHCARVGQRVNNHAGDIVTCTAEDILTDEKRDTLVK 160 HLVPQALQLHRERLKVRQVQGKWKVTGMAADVCSYFKVPPEHITEGVTNTDFVLYVASVPSEESVLAWAMTCQVFPDGHP 240 AVGVINIPAANIAARYDQLVTRVVTHEMAHALGFSDTFFEAVGIVQEVPHVRGKDFNVSVITSSTVVAKAREQYGCCCLW 320 YLEIEDQGGAGSAGSHIKMRNAQDELMAPAASAGYYTALTMAVFQDLGFYQADFSKAEAMPWGRNAGCAFLSEKCMAKNV 400 TKWPAMFCNESADAIRCPTDRLSLGTCGITAYNTSLATYWQYFTNASLGGDSAFLDYCPTVVDYSDGSCNQDASTAPDLF 480 AAFNVFSETARCIDGAFTPKNRTAADGYYGGLCANVKCDTVTRTYSVQVRGSNGYVNCTPGLRVKLSSVSDAFEKGGYVT 560 CPPYVEVCQGNVKAAKDFAGDTDSSSSADDAADKEAMQRWSDRVAALATATTLLLGMVLSLVTLLVVRLLLTSSPWCCCR 640 LGGLPT 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ...... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.10.0465 10 DSSSTHR|HR 0.104 . LmxM.10.0465 12 SSTHRHR|CV 0.137 . LmxM.10.0465 17 HRCVAAR|LV 0.154 . LmxM.10.0465 20 VAARLVR|LA 0.267 . LmxM.10.0465 47 AGAPQHR|CI 0.154 . LmxM.10.0465 56 HDAMQAR|VL 0.119 . LmxM.10.0465 65 QSVAAQR|MA 0.105 . LmxM.10.0465 104 TSPGVVR|AA 0.116 . LmxM.10.0465 112 ANWGALR|IA 0.088 . LmxM.10.0465 129 PAYHCAR|VG 0.087 . LmxM.10.0465 133 CARVGQR|VN 0.097 . LmxM.10.0465 154 DILTDEK|RD 0.052 . LmxM.10.0465 155 ILTDEKR|DT 0.192 . LmxM.10.0465 160 KRDTLVK|HL 0.066 . LmxM.10.0465 171 QALQLHR|ER 0.074 . LmxM.10.0465 173 LQLHRER|LK 0.075 . LmxM.10.0465 175 LHRERLK|VR 0.063 . LmxM.10.0465 177 RERLKVR|QV 0.155 . LmxM.10.0465 182 VRQVQGK|WK 0.087 . LmxM.10.0465 184 QVQGKWK|VT 0.080 . LmxM.10.0465 197 DVCSYFK|VP 0.054 . LmxM.10.0465 255 AANIAAR|YD 0.111 . LmxM.10.0465 262 YDQLVTR|VV 0.129 . LmxM.10.0465 292 QEVPHVR|GK 0.098 . LmxM.10.0465 294 VPHVRGK|DF 0.094 . LmxM.10.0465 309 SSTVVAK|AR 0.085 . LmxM.10.0465 311 TVVAKAR|EQ 0.095 . LmxM.10.0465 338 SAGSHIK|MR 0.073 . LmxM.10.0465 340 GSHIKMR|NA 0.220 . LmxM.10.0465 376 YQADFSK|AE 0.056 . LmxM.10.0465 384 EAMPWGR|NA 0.133 . LmxM.10.0465 394 CAFLSEK|CM 0.059 . LmxM.10.0465 398 SEKCMAK|NV 0.098 . LmxM.10.0465 402 MAKNVTK|WP 0.060 . LmxM.10.0465 416 ESADAIR|CP 0.085 . LmxM.10.0465 421 IRCPTDR|LS 0.079 . LmxM.10.0465 491 VFSETAR|CI 0.160 . LmxM.10.0465 500 DGAFTPK|NR 0.064 . LmxM.10.0465 502 AFTPKNR|TA 0.105 . LmxM.10.0465 517 GLCANVK|CD 0.060 . LmxM.10.0465 523 KCDTVTR|TY 0.098 . LmxM.10.0465 530 TYSVQVR|GS 0.138 . LmxM.10.0465 543 NCTPGLR|VK 0.059 . LmxM.10.0465 545 TPGLRVK|LS 0.068 . LmxM.10.0465 555 VSDAFEK|GG 0.059 . LmxM.10.0465 573 VCQGNVK|AA 0.063 . LmxM.10.0465 576 GNVKAAK|DF 0.081 . LmxM.10.0465 594 ADDAADK|EA 0.061 . LmxM.10.0465 599 DKEAMQR|WS 0.087 . LmxM.10.0465 603 MQRWSDR|VA 0.119 . LmxM.10.0465 628 VTLLVVR|LL 0.068 . LmxM.10.0465 640 SPWCCCR|LG 0.082 . ____________________________^_________________

  • Fasta :-

    >LmxM.10.0465 ATGCCCGTCGACAGCAGCAGCACGCACCGGCACCGCTGCGTCGCCGCGCGCCTGGTGCGC CTCGCGGCTGCCGGCGCCGCAGTCACCGTCGCTGTCGGCACCGCGGCCGCGTGGGCACAC GCCGGTGCGCCCCAGCACCGCTGCATCCACGACGCGATGCAGGCCCGCGTGCTGCAGTCG GTGGCGGCTCAGCGCATGGCCCCCAGCGCGGTGTCCGCGGTGGGCCTGCCGTACGTGTCC GTGGTCCCCGTCGAGAACGCCAGCACCCTCGACTACTCGCTATCGGACAGCACGTCGCCC GGTGTTGTGCGCGCCGCGAACTGGGGCGCGCTGCGCATCGCCGTCTCCGCCGAAGACCTC ACCGACCCCGCCTACCACTGCGCTCGTGTTGGGCAGCGCGTCAACAACCACGCCGGCGAC ATCGTCACCTGCACCGCCGAGGACATCCTCACCGACGAGAAGCGCGACACCCTCGTCAAG CACCTCGTCCCGCAGGCGCTGCAGCTGCACAGGGAGCGCCTGAAGGTGCGGCAGGTGCAG GGCAAGTGGAAGGTGACGGGCATGGCGGCCGACGTGTGCAGCTACTTCAAGGTGCCGCCG GAGCACATCACGGAAGGCGTGACCAACACCGACTTCGTGCTGTACGTCGCCTCCGTGCCG AGCGAGGAGAGTGTGCTGGCGTGGGCCATGACCTGCCAGGTGTTCCCTGACGGCCACCCA GCTGTCGGCGTCATCAACATCCCCGCGGCGAACATTGCGGCGCGGTACGACCAGCTCGTC ACGCGTGTCGTCACGCACGAGATGGCGCACGCGCTGGGCTTCAGCGACACATTCTTTGAG GCCGTCGGCATCGTGCAAGAGGTGCCGCACGTTCGCGGCAAGGACTTTAATGTGTCGGTG ATCACCAGCAGCACGGTGGTGGCGAAGGCGCGTGAGCAGTACGGCTGCTGCTGCTTGTGG TATCTGGAGATTGAGGACCAGGGCGGTGCGGGCTCCGCCGGGTCGCATATCAAGATGCGC AACGCGCAGGACGAGCTCATGGCGCCTGCCGCATCTGCCGGGTACTACACCGCCCTGACC ATGGCCGTCTTCCAGGACCTCGGCTTCTACCAGGCGGACTTCAGCAAGGCCGAGGCGATG CCGTGGGGCCGGAACGCCGGCTGCGCCTTCCTCAGCGAGAAGTGCATGGCGAAGAACGTC ACGAAGTGGCCGGCGATGTTCTGCAATGAGAGTGCGGACGCCATACGGTGCCCCACCGAC CGTCTGAGCCTCGGAACTTGTGGTATAACAGCATACAATACTTCGTTGGCGACGTACTGG CAGTACTTCACCAACGCGTCCCTCGGGGGCGACTCGGCATTCCTGGACTACTGCCCGACT GTTGTTGACTACAGTGACGGCTCGTGCAATCAGGATGCGTCGACGGCACCGGACCTTTTC GCTGCGTTCAACGTCTTCTCCGAGACCGCGCGGTGCATCGATGGCGCCTTCACGCCGAAG AACAGAACCGCTGCGGATGGATACTACGGCGGCCTGTGCGCCAACGTGAAGTGCGACACG GTCACGCGCACGTACAGCGTCCAGGTGCGCGGCAGCAACGGCTACGTGAACTGCACGCCG GGCCTCAGAGTTAAGTTGAGCAGCGTGAGCGACGCCTTCGAGAAGGGCGGCTACGTCACG TGCCCGCCGTACGTGGAGGTGTGCCAGGGCAACGTCAAAGCTGCCAAGGACTTTGCAGGC GACACCGACAGCTCCAGCAGCGCCGATGACGCTGCCGACAAAGAGGCGATGCAGCGGTGG AGTGACAGGGTGGCCGCCTTGGCTACTGCGACGACGCTGCTGCTAGGAATGGTGCTCTCT CTCGTGACACTCCTCGTGGTGCGGCTACTCCTTACCAGCTCCCCCTGGTGCTGCTGCAGA CTGGGGGGGCTCCCGACGTGA
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  • Fasta :-

    MPVDSSSTHRHRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGAPQHRCIHDAMQARVLQS VAAQRMAPSAVSAVGLPYVSVVPVENASTLDYSLSDSTSPGVVRAANWGALRIAVSAEDL TDPAYHCARVGQRVNNHAGDIVTCTAEDILTDEKRDTLVKHLVPQALQLHRERLKVRQVQ GKWKVTGMAADVCSYFKVPPEHITEGVTNTDFVLYVASVPSEESVLAWAMTCQVFPDGHP AVGVINIPAANIAARYDQLVTRVVTHEMAHALGFSDTFFEAVGIVQEVPHVRGKDFNVSV ITSSTVVAKAREQYGCCCLWYLEIEDQGGAGSAGSHIKMRNAQDELMAPAASAGYYTALT MAVFQDLGFYQADFSKAEAMPWGRNAGCAFLSEKCMAKNVTKWPAMFCNESADAIRCPTD RLSLGTCGITAYNTSLATYWQYFTNASLGGDSAFLDYCPTVVDYSDGSCNQDASTAPDLF AAFNVFSETARCIDGAFTPKNRTAADGYYGGLCANVKCDTVTRTYSVQVRGSNGYVNCTP GLRVKLSSVSDAFEKGGYVTCPPYVEVCQGNVKAAKDFAGDTDSSSSADDAADKEAMQRW SDRVAALATATTLLLGMVLSLVTLLVVRLLLTSSPWCCCRLGGLPT

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.10.0465116 SRIAVSAEDL0.991unspLmxM.10.0465116 SRIAVSAEDL0.991unspLmxM.10.0465116 SRIAVSAEDL0.991unspLmxM.10.0465548 SVKLSSVSDA0.997unspLmxM.10.0465586 STDSSSSADD0.991unspLmxM.10.0465587 SDSSSSADDA0.997unspLmxM.10.04657 SVDSSSTHRH0.991unspLmxM.10.046593 STLDYSLSDS0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India