LmxM.10.0470 | GP63, leishmanolysin

_IDPredictionOTHERSPmTPCS_Position
LmxM.10.0470OTHER0.9354310.0405860.023983
No Results

  • Fasta :-

    >LmxM.10.0470 MPVDSSSTHRHRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGAPQHRCIHDAMQARVRQS VAAQRMAPSAVSAVGLPHVTLDAADTAAGADPSTGTPRNVVRAANWGALRIAVSAEDLTD PAYHCARVGQRISARDGRFAVCTAEDILTDEKRDILVKHLVPQALQLHRERLKVRQVQGK WKVTDMAADVCSYFKVPPAHVTGGVSNTDFVLYVASVPSEESVLAWAMTCQVFPDGHPAV GVINIPAANIASRYDQLVTRVVAHEMAHALGFSGTFFEAVGIVQEVPGIRGKTFTVAVIN SSTAVAKAREQYGCNSLEYLEMEDQGGAGSAGSHIKMRNAQDELMAPAASAGYYTALTMA VFQDLGFYQADFSKAEAMPWGRNAGCAFLSEKCMENGVTKWPAMFCNESADAIRCPTSRL SVGMCDVTPYQALPPYLQYFTDPFLAGSSAFMDYCPVVVPYDDGSCGQSASEADAAFKAF NVFSDAARCIDGAFRPKTTHGVIKSYAALCANVKCDTAARTYSVQVRGSSGYANCTPGLR FELSTVSDAFEKGGYVTCPPYVEVCQGNAQAIKDGGNAAAGRRGPRAAATALVVAALLAV AL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/394 Sequence name : 394 Sequence length : 602 VALUES OF COMPUTED PARAMETERS Coef20 : 4.722 CoefTot : 0.659 ChDiff : -1 ZoneTo : 81 KR : 8 DE : 2 CleavSite : 67 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.729 2.176 0.314 0.638 MesoH : 0.118 0.646 -0.202 0.346 MuHd_075 : 33.291 24.746 10.885 6.507 MuHd_095 : 34.143 19.707 9.810 6.986 MuHd_100 : 31.247 16.869 8.593 7.127 MuHd_105 : 30.307 19.095 8.802 7.375 Hmax_075 : 13.417 21.117 4.025 5.340 Hmax_095 : 6.300 11.300 1.033 3.098 Hmax_100 : 8.500 8.000 0.889 3.960 Hmax_105 : 8.983 14.800 -0.453 4.500 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7043 0.2957 DFMC : 0.2599 0.7401 This protein is probably imported in mitochondria. f(Ser) = 0.0741 f(Arg) = 0.0988 CMi = 0.35566 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 602 LmxM.10.0470 MPVDSSSTHRHRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGAPQHRCIHDAMQARVRQSVAAQRMAPSAVSAVGLPHVT 80 LDAADTAAGADPSTGTPRNVVRAANWGALRIAVSAEDLTDPAYHCARVGQRISARDGRFAVCTAEDILTDEKRDILVKHL 160 VPQALQLHRERLKVRQVQGKWKVTDMAADVCSYFKVPPAHVTGGVSNTDFVLYVASVPSEESVLAWAMTCQVFPDGHPAV 240 GVINIPAANIASRYDQLVTRVVAHEMAHALGFSGTFFEAVGIVQEVPGIRGKTFTVAVINSSTAVAKAREQYGCNSLEYL 320 EMEDQGGAGSAGSHIKMRNAQDELMAPAASAGYYTALTMAVFQDLGFYQADFSKAEAMPWGRNAGCAFLSEKCMENGVTK 400 WPAMFCNESADAIRCPTSRLSVGMCDVTPYQALPPYLQYFTDPFLAGSSAFMDYCPVVVPYDDGSCGQSASEADAAFKAF 480 NVFSDAARCIDGAFRPKTTHGVIKSYAALCANVKCDTAARTYSVQVRGSSGYANCTPGLRFELSTVSDAFEKGGYVTCPP 560 YVEVCQGNAQAIKDGGNAAAGRRGPRAAATALVVAALLAVAL 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .......................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.10.0470 10 DSSSTHR|HR 0.104 . LmxM.10.0470 12 SSTHRHR|CV 0.137 . LmxM.10.0470 17 HRCVAAR|LV 0.154 . LmxM.10.0470 20 VAARLVR|LA 0.267 . LmxM.10.0470 47 AGAPQHR|CI 0.154 . LmxM.10.0470 56 HDAMQAR|VR 0.099 . LmxM.10.0470 58 AMQARVR|QS 0.109 . LmxM.10.0470 65 QSVAAQR|MA 0.102 . LmxM.10.0470 98 PSTGTPR|NV 0.115 . LmxM.10.0470 102 TPRNVVR|AA 0.169 . LmxM.10.0470 110 ANWGALR|IA 0.088 . LmxM.10.0470 127 PAYHCAR|VG 0.073 . LmxM.10.0470 131 CARVGQR|IS 0.081 . LmxM.10.0470 135 GQRISAR|DG 0.140 . LmxM.10.0470 138 ISARDGR|FA 0.387 . LmxM.10.0470 152 DILTDEK|RD 0.053 . LmxM.10.0470 153 ILTDEKR|DI 0.203 . LmxM.10.0470 158 KRDILVK|HL 0.067 . LmxM.10.0470 169 QALQLHR|ER 0.074 . LmxM.10.0470 171 LQLHRER|LK 0.075 . LmxM.10.0470 173 LHRERLK|VR 0.063 . LmxM.10.0470 175 RERLKVR|QV 0.155 . LmxM.10.0470 180 VRQVQGK|WK 0.077 . LmxM.10.0470 182 QVQGKWK|VT 0.073 . LmxM.10.0470 195 DVCSYFK|VP 0.055 . LmxM.10.0470 253 AANIASR|YD 0.101 . LmxM.10.0470 260 YDQLVTR|VV 0.114 . LmxM.10.0470 290 QEVPGIR|GK 0.074 . LmxM.10.0470 292 VPGIRGK|TF 0.067 . LmxM.10.0470 307 SSTAVAK|AR 0.084 . LmxM.10.0470 309 TAVAKAR|EQ 0.112 . LmxM.10.0470 336 SAGSHIK|MR 0.073 . LmxM.10.0470 338 GSHIKMR|NA 0.220 . LmxM.10.0470 374 YQADFSK|AE 0.056 . LmxM.10.0470 382 EAMPWGR|NA 0.133 . LmxM.10.0470 392 CAFLSEK|CM 0.065 . LmxM.10.0470 400 MENGVTK|WP 0.063 . LmxM.10.0470 414 ESADAIR|CP 0.079 . LmxM.10.0470 419 IRCPTSR|LS 0.085 . LmxM.10.0470 478 EADAAFK|AF 0.059 . LmxM.10.0470 488 VFSDAAR|CI 0.159 . LmxM.10.0470 495 CIDGAFR|PK 0.080 . LmxM.10.0470 497 DGAFRPK|TT 0.078 . LmxM.10.0470 504 TTHGVIK|SY 0.106 . LmxM.10.0470 514 ALCANVK|CD 0.062 . LmxM.10.0470 520 KCDTAAR|TY 0.099 . LmxM.10.0470 527 TYSVQVR|GS 0.164 . LmxM.10.0470 540 NCTPGLR|FE 0.061 . LmxM.10.0470 552 VSDAFEK|GG 0.058 . LmxM.10.0470 573 GNAQAIK|DG 0.083 . LmxM.10.0470 582 GNAAAGR|RG 0.083 . LmxM.10.0470 583 NAAAGRR|GP 0.146 . LmxM.10.0470 586 AGRRGPR|AA 0.358 . ____________________________^_________________

  • Fasta :-

    >LmxM.10.0470 ATGCCCGTCGACAGCAGCAGCACGCACCGGCACCGCTGCGTCGCCGCGCGCCTGGTGCGC CTCGCGGCTGCCGGCGCCGCAGTCACCGTCGCTGTCGGCACCGCGGCCGCGTGGGCACAC GCCGGTGCGCCCCAGCACCGCTGCATCCACGACGCGATGCAGGCCCGCGTGCGGCAGTCG GTGGCGGCTCAGCGCATGGCCCCCAGCGCGGTGTCCGCGGTGGGCCTGCCGCACGTGACT CTCGACGCCGCGGACACCGCTGCCGGCGCCGATCCCAGCACGGGCACCCCGCGCAACGTT GTGCGCGCCGCGAACTGGGGCGCGCTGCGCATCGCCGTCTCCGCCGAAGACCTCACCGAC CCCGCCTACCACTGCGCTCGTGTCGGGCAGCGTATCAGCGCGCGCGACGGCCGTTTCGCC GTCTGCACCGCCGAGGACATCCTCACCGACGAGAAGCGCGACATCCTCGTCAAACACCTC GTCCCGCAGGCGCTGCAGCTGCACAGGGAGCGCCTGAAGGTGCGGCAGGTGCAGGGCAAG TGGAAGGTGACAGACATGGCGGCCGACGTGTGCAGCTACTTCAAGGTGCCGCCGGCGCAC GTCACCGGAGGCGTGAGCAACACCGACTTCGTGTTGTACGTCGCCTCCGTGCCGAGCGAG GAGAGTGTGCTGGCGTGGGCCATGACCTGCCAGGTGTTCCCTGACGGCCACCCAGCTGTC GGCGTCATCAACATCCCCGCAGCGAACATTGCGTCGCGGTACGACCAGCTCGTCACGCGT GTCGTCGCGCACGAGATGGCGCACGCGCTGGGCTTCAGCGGCACATTCTTTGAGGCCGTC GGCATCGTGCAAGAGGTGCCGGGAATACGCGGCAAGACCTTTACAGTAGCTGTGATCAAC AGCAGCACGGCGGTGGCGAAGGCGCGTGAGCAGTACGGCTGCAACAGCTTGGAGTATCTG GAGATGGAGGACCAGGGCGGTGCGGGCTCCGCCGGGTCGCATATCAAGATGCGCAACGCG CAGGACGAGCTCATGGCGCCTGCCGCATCTGCCGGGTACTACACCGCCCTGACCATGGCC GTCTTCCAGGACCTCGGCTTCTACCAGGCGGACTTCAGCAAGGCCGAGGCGATGCCGTGG GGCCGGAACGCCGGCTGCGCCTTCCTCAGCGAGAAGTGCATGGAGAACGGCGTCACGAAG TGGCCGGCGATGTTCTGCAATGAGAGTGCGGACGCCATACGGTGCCCCACCAGTCGCCTC AGCGTCGGAATGTGCGATGTTACCCCCTACCAAGCGCTTCCGCCGTACTTGCAGTACTTC ACGGACCCGTTCCTGGCCGGCAGCTCCGCCTTCATGGACTACTGCCCTGTGGTGGTGCCG TACGATGATGGCAGCTGCGGGCAGAGTGCCTCTGAAGCCGACGCAGCCTTTAAGGCCTTC AACGTCTTCTCCGACGCGGCGCGCTGCATCGACGGCGCCTTCAGACCGAAGACGACTCAC GGTGTAATCAAGTCGTACGCCGCCCTGTGCGCCAACGTGAAGTGCGACACGGCCGCGCGC ACGTACAGCGTCCAGGTGCGCGGCAGCAGCGGCTACGCCAACTGCACGCCGGGCCTCAGG TTTGAGCTGAGCACCGTGAGCGACGCCTTCGAGAAGGGCGGCTACGTCACGTGCCCGCCG TACGTGGAGGTGTGCCAGGGCAACGCGCAGGCTATCAAGGACGGCGGCAACGCCGCGGCT GGTCGCCGTGGTCCGCGCGCCGCGGCGACGGCGCTGGTGGTGGCCGCGCTGCTCGCCGTG GCGCTCTAG
  • Download Fasta

  • Fasta :-

    MPVDSSSTHRHRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGAPQHRCIHDAMQARVRQS VAAQRMAPSAVSAVGLPHVTLDAADTAAGADPSTGTPRNVVRAANWGALRIAVSAEDLTD PAYHCARVGQRISARDGRFAVCTAEDILTDEKRDILVKHLVPQALQLHRERLKVRQVQGK WKVTDMAADVCSYFKVPPAHVTGGVSNTDFVLYVASVPSEESVLAWAMTCQVFPDGHPAV GVINIPAANIASRYDQLVTRVVAHEMAHALGFSGTFFEAVGIVQEVPGIRGKTFTVAVIN SSTAVAKAREQYGCNSLEYLEMEDQGGAGSAGSHIKMRNAQDELMAPAASAGYYTALTMA VFQDLGFYQADFSKAEAMPWGRNAGCAFLSEKCMENGVTKWPAMFCNESADAIRCPTSRL SVGMCDVTPYQALPPYLQYFTDPFLAGSSAFMDYCPVVVPYDDGSCGQSASEADAAFKAF NVFSDAARCIDGAFRPKTTHGVIKSYAALCANVKCDTAARTYSVQVRGSSGYANCTPGLR FELSTVSDAFEKGGYVTCPPYVEVCQGNAQAIKDGGNAAAGRRGPRAAATALVVAALLAV AL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.10.0470114 SRIAVSAEDL0.991unspLmxM.10.0470114 SRIAVSAEDL0.991unspLmxM.10.0470114 SRIAVSAEDL0.991unspLmxM.10.0470133 SGQRISARDG0.997unspLmxM.10.0470421 STSRLSVGMC0.993unspLmxM.10.04707 SVDSSSTHRH0.991unspLmxM.10.047096 TPSTGTPRNV0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India