LmxM.11.0630 | metallo-peptidase, Clan MF, Family M17

_IDPredictionOTHERSPmTPCS_Position
LmxM.11.0630OTHER0.9984540.0006190.000927
No Results

  • Fasta :-

    >LmxM.11.0630 MKRPRSSSAVEESAVSAYVQTCTNFKSSVTFTDISKVSCVAPRVLLVGALEQLQDNSVKS VPFYCSAVAEVLQRVKAGATVKTLAEVSGRNGFIEVTVTALPATRSRTNCPYRADSISEA VTAACGSVEEGEVLDVYVRVPAGAETAVANAVARAAPHSYTAKAKQATKAYMKQEITLNV VMSSRAAFTQEKVRGKSVCVAELEAICTSVQLCQRLVDTPPCMLDTVVYAEIASAYAAEL GVDMAVIKGEELREKGYGGIYAVGKCAQYPPHLVTLRYRNPNATVGAKNVAMTGKGIVYD CGGLALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKMQKDHFSHIANISVTLCLAENAI GPNSYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVFYATGEQCFIPDVVIDMATLTGAQ GVATGSRHAGIYVSDAEVEKNMVTAGLQSGDLCYPVLYCPEYHEEVYKSPCADMRNIANS PSSAGSSCGGYFVEQQLSERFKGPFVHVDMAYPSSNPAGATGYGVALVFEFLRHY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/505 Sequence name : 505 Sequence length : 535 VALUES OF COMPUTED PARAMETERS Coef20 : 4.315 CoefTot : 0.381 ChDiff : -3 ZoneTo : 10 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.576 0.277 0.600 MesoH : -0.138 0.555 -0.240 0.265 MuHd_075 : 19.340 16.153 6.455 4.325 MuHd_095 : 3.510 4.616 0.754 0.744 MuHd_100 : 8.087 5.317 2.942 2.680 MuHd_105 : 18.524 8.433 5.244 4.007 Hmax_075 : 4.083 10.967 -0.631 1.843 Hmax_095 : -0.788 2.450 -1.836 1.190 Hmax_100 : -1.200 1.500 -1.851 1.020 Hmax_105 : -0.262 1.983 -1.851 1.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8519 0.1481 DFMC : 0.7368 0.2632
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 535 LmxM.11.0630 MKRPRSSSAVEESAVSAYVQTCTNFKSSVTFTDISKVSCVAPRVLLVGALEQLQDNSVKSVPFYCSAVAEVLQRVKAGAT 80 VKTLAEVSGRNGFIEVTVTALPATRSRTNCPYRADSISEAVTAACGSVEEGEVLDVYVRVPAGAETAVANAVARAAPHSY 160 TAKAKQATKAYMKQEITLNVVMSSRAAFTQEKVRGKSVCVAELEAICTSVQLCQRLVDTPPCMLDTVVYAEIASAYAAEL 240 GVDMAVIKGEELREKGYGGIYAVGKCAQYPPHLVTLRYRNPNATVGAKNVAMTGKGIVYDCGGLALKPAAHMTNMKTDMG 320 GSAGVFCAFIAVVRSMKMQKDHFSHIANISVTLCLAENAIGPNSYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVFYAT 400 GEQCFIPDVVIDMATLTGAQGVATGSRHAGIYVSDAEVEKNMVTAGLQSGDLCYPVLYCPEYHEEVYKSPCADMRNIANS 480 PSSAGSSCGGYFVEQQLSERFKGPFVHVDMAYPSSNPAGATGYGVALVFEFLRHY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ....................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.11.0630 2 -----MK|RP 0.058 . LmxM.11.0630 3 ----MKR|PR 0.158 . LmxM.11.0630 5 --MKRPR|SS 0.322 . LmxM.11.0630 26 QTCTNFK|SS 0.074 . LmxM.11.0630 36 TFTDISK|VS 0.057 . LmxM.11.0630 43 VSCVAPR|VL 0.084 . LmxM.11.0630 59 LQDNSVK|SV 0.093 . LmxM.11.0630 74 VAEVLQR|VK 0.073 . LmxM.11.0630 76 EVLQRVK|AG 0.055 . LmxM.11.0630 82 KAGATVK|TL 0.060 . LmxM.11.0630 90 LAEVSGR|NG 0.089 . LmxM.11.0630 105 TALPATR|SR 0.089 . LmxM.11.0630 107 LPATRSR|TN 0.109 . LmxM.11.0630 113 RTNCPYR|AD 0.155 . LmxM.11.0630 139 VLDVYVR|VP 0.071 . LmxM.11.0630 154 VANAVAR|AA 0.152 . LmxM.11.0630 163 PHSYTAK|AK 0.079 . LmxM.11.0630 165 SYTAKAK|QA 0.090 . LmxM.11.0630 169 KAKQATK|AY 0.078 . LmxM.11.0630 173 ATKAYMK|QE 0.060 . LmxM.11.0630 185 NVVMSSR|AA 0.136 . LmxM.11.0630 192 AAFTQEK|VR 0.063 . LmxM.11.0630 194 FTQEKVR|GK 0.101 . LmxM.11.0630 196 QEKVRGK|SV 0.137 . LmxM.11.0630 215 SVQLCQR|LV 0.108 . LmxM.11.0630 248 VDMAVIK|GE 0.069 . LmxM.11.0630 253 IKGEELR|EK 0.113 . LmxM.11.0630 255 GEELREK|GY 0.083 . LmxM.11.0630 265 GIYAVGK|CA 0.071 . LmxM.11.0630 277 PHLVTLR|YR 0.076 . LmxM.11.0630 279 LVTLRYR|NP 0.078 . LmxM.11.0630 288 NATVGAK|NV 0.074 . LmxM.11.0630 295 NVAMTGK|GI 0.070 . LmxM.11.0630 307 CGGLALK|PA 0.063 . LmxM.11.0630 316 AHMTNMK|TD 0.064 . LmxM.11.0630 334 AFIAVVR|SM 0.112 . LmxM.11.0630 337 AVVRSMK|MQ 0.141 . LmxM.11.0630 340 RSMKMQK|DH 0.079 . LmxM.11.0630 366 IGPNSYR|ND 0.090 . LmxM.11.0630 374 DDVVVMK|SG 0.089 . LmxM.11.0630 377 VVMKSGK|SV 0.130 . LmxM.11.0630 389 NTDAEGR|IV 0.089 . LmxM.11.0630 427 GVATGSR|HA 0.130 . LmxM.11.0630 440 SDAEVEK|NM 0.067 . LmxM.11.0630 468 YHEEVYK|SP 0.082 . LmxM.11.0630 475 SPCADMR|NI 0.119 . LmxM.11.0630 500 EQQLSER|FK 0.106 . LmxM.11.0630 502 QLSERFK|GP 0.088 . LmxM.11.0630 533 LVFEFLR|HY 0.084 . ____________________________^_________________

  • Fasta :-

    >LmxM.11.0630 ATGAAGCGTCCGCGTTCCAGCTCGGCGGTGGAGGAGTCGGCGGTGTCGGCGTACGTGCAG ACGTGCACGAACTTCAAGTCGAGTGTGACGTTCACAGATATCTCGAAGGTATCATGTGTT GCGCCGCGCGTGCTTCTGGTTGGCGCGCTGGAGCAGCTGCAAGACAACTCTGTGAAGTCC GTGCCGTTTTACTGCTCGGCGGTTGCGGAGGTGCTGCAGCGGGTGAAGGCTGGTGCGACG GTGAAGACGCTTGCGGAGGTTTCAGGGCGCAATGGCTTCATAGAAGTGACGGTGACCGCG CTGCCGGCAACCAGGTCGCGCACGAACTGCCCTTACCGCGCGGACAGCATATCGGAGGCC GTCACTGCTGCGTGCGGGAGCGTCGAAGAAGGCGAGGTGCTTGACGTGTACGTGCGCGTG CCTGCTGGCGCGGAGACGGCGGTCGCGAACGCTGTTGCGCGCGCTGCGCCGCACTCGTAC ACCGCGAAGGCTAAGCAGGCGACGAAGGCGTACATGAAACAGGAAATCACGCTGAACGTC GTGATGTCATCACGCGCTGCGTTCACGCAGGAGAAAGTGCGCGGAAAGTCCGTGTGCGTG GCGGAGCTGGAGGCGATCTGCACGTCTGTGCAGCTGTGCCAGCGCCTGGTGGACACGCCG CCGTGCATGCTGGACACTGTCGTGTACGCTGAGATCGCTTCTGCTTACGCCGCTGAGCTC GGCGTGGACATGGCTGTGATCAAGGGTGAGGAGCTGCGCGAGAAGGGCTACGGCGGTATC TACGCTGTGGGCAAGTGTGCGCAGTACCCGCCGCACCTGGTGACGCTGCGCTACAGGAAC CCGAACGCCACTGTGGGCGCCAAGAATGTTGCGATGACTGGCAAGGGTATCGTGTACGAC TGCGGCGGCCTTGCGCTGAAGCCGGCCGCGCACATGACGAACATGAAGACGGACATGGGC GGCTCCGCCGGCGTGTTCTGCGCCTTCATCGCGGTGGTGCGCAGCATGAAGATGCAGAAG GATCACTTCAGCCACATCGCCAACATCAGCGTGACGCTGTGCTTGGCGGAGAACGCGATC GGCCCCAACTCGTACCGAAACGACGACGTCGTGGTGATGAAGTCGGGCAAGTCGGTGGAG GTGATGAACACGGATGCCGAGGGCCGCATCGTGCTTGGCGACGGCGTGTTCTACGCGACG GGGGAGCAGTGCTTCATCCCGGATGTGGTGATCGACATGGCGACGCTGACGGGTGCGCAG GGTGTGGCGACGGGGTCGAGGCACGCCGGCATTTACGTCAGCGATGCCGAGGTAGAGAAG AACATGGTCACTGCGGGCCTGCAGTCCGGCGACCTGTGCTACCCAGTGCTGTACTGCCCC GAGTACCACGAGGAGGTGTACAAAAGCCCCTGCGCCGATATGCGCAACATTGCGAACTCG CCATCCAGCGCCGGCTCGAGCTGCGGCGGGTACTTTGTCGAGCAGCAACTGAGCGAGCGC TTCAAGGGCCCCTTCGTCCACGTTGATATGGCCTACCCCAGCTCGAACCCGGCCGGCGCC ACCGGCTACGGTGTTGCTCTCGTGTTCGAGTTTCTGCGCCACTACTAG
  • Download Fasta

  • Fasta :-

    MKRPRSSSAVEESAVSAYVQTCTNFKSSVTFTDISKVSCVAPRVLLVGALEQLQDNSVKS VPFYCSAVAEVLQRVKAGATVKTLAEVSGRNGFIEVTVTALPATRSRTNCPYRADSISEA VTAACGSVEEGEVLDVYVRVPAGAETAVANAVARAAPHSYTAKAKQATKAYMKQEITLNV VMSSRAAFTQEKVRGKSVCVAELEAICTSVQLCQRLVDTPPCMLDTVVYAEIASAYAAEL GVDMAVIKGEELREKGYGGIYAVGKCAQYPPHLVTLRYRNPNATVGAKNVAMTGKGIVYD CGGLALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKMQKDHFSHIANISVTLCLAENAI GPNSYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVFYATGEQCFIPDVVIDMATLTGAQ GVATGSRHAGIYVSDAEVEKNMVTAGLQSGDLCYPVLYCPEYHEEVYKSPCADMRNIANS PSSAGSSCGGYFVEQQLSERFKGPFVHVDMAYPSSNPAGATGYGVALVFEFLRHY

  • title: Substrate-binding/catalytic site
  • coordinates: K295,D300,K307,D318,D385,E387,R389,L416
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.11.063028 SNFKSSVTFT0.994unspLmxM.11.063028 SNFKSSVTFT0.994unspLmxM.11.063028 SNFKSSVTFT0.994unspLmxM.11.0630116 SYRADSISEA0.998unspLmxM.11.0630127 SAACGSVEEG0.995unspLmxM.11.0630197 SVRGKSVCVA0.993unspLmxM.11.0630335 SAVVRSMKMQ0.993unspLmxM.11.0630364 SIGPNSYRND0.991unspLmxM.11.0630480 SNIANSPSSA0.991unspLmxM.11.06306 SKRPRSSSAV0.993unspLmxM.11.06308 SPRSSSAVEE0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India