LmxM.11.0720 | PUF nine target 1

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0020023      

  • Curated_GO_Components:  kinetoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.11.0720SP0.4504140.5434840.006103CS pos: 22-23. VTA-WP. Pr: 0.9666
No Results

  • Fasta :-

    >LmxM.11.0720 MPPRRCPNRLLVLCASINDVTAWPFWKFLQMKKIRGVTDMALLAFNSDGGSFEARIDGDK YQLKNYAKVRGYQHDMFESFVHRWHDPGRSYFVYGGHGMGDYVELEQNRVSLQVHELADV FGTRIFEAVLFDACFMANLDCAYHLRHNTRYIGACEGYMWEPDTALDYHVFNTHNASAMS RFKDPLHILRVIQADYCSKAPRGDFTIIDTTHIAELRQYVQEHVMQRVYDRATFYSLPQR ERLQQIAEAAIQASISQFGHPGGDTNVMNGVGSGTGRPRTASLSPEMLALSAAGRPTRRQ RMLQAIQFEHSLYPSEVDDKQLLDLKSYLTDMLREEQQQKAWEAAALGPHRRIAAGRRRV RSDALEHGGSSGIAAASCASSSFAVWKAPPSRALFVDEHGRLPAASSAGCALSTNGGPVA ATDTQEEATALCPAALASTPAMAAAPPPSLSTSYKGSAQEGLNLFHQVVVSQIPPKAASI YASQLGGLSFTVHEYSAMSRPAEPWLVGSKRLLKRRAKQFLKSGELSEVVMESPKASVPV TGAALVAAVEKATATAAAVTGASAGKPQHATSVPALPLSPRTRMLSTDQRLGFASSSNGT DSDSSLSLSLSAPLFTSSTDACNSNMKAVILDSPQRPGSYTSLPDSKQRTSAC
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/583 Sequence name : 583 Sequence length : 653 VALUES OF COMPUTED PARAMETERS Coef20 : 4.310 CoefTot : -0.840 ChDiff : 6 ZoneTo : 38 KR : 7 DE : 1 CleavSite : 37 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.553 1.400 0.286 0.556 MesoH : 0.303 0.362 -0.166 0.272 MuHd_075 : 48.389 22.611 11.342 9.437 MuHd_095 : 29.618 23.121 10.069 6.131 MuHd_100 : 37.789 21.512 11.448 7.265 MuHd_105 : 37.254 22.406 10.804 7.601 Hmax_075 : 13.600 17.850 4.574 4.702 Hmax_095 : 6.563 17.150 3.800 3.185 Hmax_100 : 16.500 20.600 6.467 5.400 Hmax_105 : 16.217 21.000 6.099 2.126 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1479 0.8521 DFMC : 0.1435 0.8565 This protein is probably imported in mitochondria. f(Ser) = 0.0263 f(Arg) = 0.1053 CMi = 0.12107 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 653 LmxM.11.0720 MPPRRCPNRLLVLCASINDVTAWPFWKFLQMKKIRGVTDMALLAFNSDGGSFEARIDGDKYQLKNYAKVRGYQHDMFESF 80 VHRWHDPGRSYFVYGGHGMGDYVELEQNRVSLQVHELADVFGTRIFEAVLFDACFMANLDCAYHLRHNTRYIGACEGYMW 160 EPDTALDYHVFNTHNASAMSRFKDPLHILRVIQADYCSKAPRGDFTIIDTTHIAELRQYVQEHVMQRVYDRATFYSLPQR 240 ERLQQIAEAAIQASISQFGHPGGDTNVMNGVGSGTGRPRTASLSPEMLALSAAGRPTRRQRMLQAIQFEHSLYPSEVDDK 320 QLLDLKSYLTDMLREEQQQKAWEAAALGPHRRIAAGRRRVRSDALEHGGSSGIAAASCASSSFAVWKAPPSRALFVDEHG 400 RLPAASSAGCALSTNGGPVAATDTQEEATALCPAALASTPAMAAAPPPSLSTSYKGSAQEGLNLFHQVVVSQIPPKAASI 480 YASQLGGLSFTVHEYSAMSRPAEPWLVGSKRLLKRRAKQFLKSGELSEVVMESPKASVPVTGAALVAAVEKATATAAAVT 560 GASAGKPQHATSVPALPLSPRTRMLSTDQRLGFASSSNGTDSDSSLSLSLSAPLFTSSTDACNSNMKAVILDSPQRPGSY 640 TSLPDSKQRTSAC 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.11.0720 4 ---MPPR|RC 0.074 . LmxM.11.0720 5 --MPPRR|CP 0.114 . LmxM.11.0720 9 PRRCPNR|LL 0.084 . LmxM.11.0720 27 TAWPFWK|FL 0.071 . LmxM.11.0720 32 WKFLQMK|KI 0.085 . LmxM.11.0720 33 KFLQMKK|IR 0.085 . LmxM.11.0720 35 LQMKKIR|GV 0.177 . LmxM.11.0720 55 GGSFEAR|ID 0.160 . LmxM.11.0720 60 ARIDGDK|YQ 0.059 . LmxM.11.0720 64 GDKYQLK|NY 0.071 . LmxM.11.0720 68 QLKNYAK|VR 0.072 . LmxM.11.0720 70 KNYAKVR|GY 0.114 . LmxM.11.0720 83 FESFVHR|WH 0.145 . LmxM.11.0720 89 RWHDPGR|SY 0.208 . LmxM.11.0720 109 VELEQNR|VS 0.069 . LmxM.11.0720 124 ADVFGTR|IF 0.122 . LmxM.11.0720 146 DCAYHLR|HN 0.102 . LmxM.11.0720 150 HLRHNTR|YI 0.245 . LmxM.11.0720 181 NASAMSR|FK 0.115 . LmxM.11.0720 183 SAMSRFK|DP 0.076 . LmxM.11.0720 190 DPLHILR|VI 0.078 . LmxM.11.0720 199 QADYCSK|AP 0.059 . LmxM.11.0720 202 YCSKAPR|GD 0.171 . LmxM.11.0720 217 THIAELR|QY 0.095 . LmxM.11.0720 227 QEHVMQR|VY 0.104 . LmxM.11.0720 231 MQRVYDR|AT 0.141 . LmxM.11.0720 240 FYSLPQR|ER 0.084 . LmxM.11.0720 242 SLPQRER|LQ 0.088 . LmxM.11.0720 277 VGSGTGR|PR 0.105 . LmxM.11.0720 279 SGTGRPR|TA 0.119 . LmxM.11.0720 295 ALSAAGR|PT 0.122 . LmxM.11.0720 298 AAGRPTR|RQ 0.181 . LmxM.11.0720 299 AGRPTRR|QR 0.116 . LmxM.11.0720 301 RPTRRQR|ML 0.437 . LmxM.11.0720 320 PSEVDDK|QL 0.059 . LmxM.11.0720 326 KQLLDLK|SY 0.060 . LmxM.11.0720 334 YLTDMLR|EE 0.073 . LmxM.11.0720 340 REEQQQK|AW 0.075 . LmxM.11.0720 351 AALGPHR|RI 0.092 . LmxM.11.0720 352 ALGPHRR|IA 0.174 . LmxM.11.0720 357 RRIAAGR|RR 0.087 . LmxM.11.0720 358 RIAAGRR|RV 0.140 . LmxM.11.0720 359 IAAGRRR|VR 0.177 . LmxM.11.0720 361 AGRRRVR|SD 0.302 . LmxM.11.0720 387 SSFAVWK|AP 0.063 . LmxM.11.0720 392 WKAPPSR|AL 0.122 . LmxM.11.0720 401 FVDEHGR|LP 0.070 . LmxM.11.0720 455 SLSTSYK|GS 0.109 . LmxM.11.0720 476 VSQIPPK|AA 0.089 . LmxM.11.0720 500 EYSAMSR|PA 0.138 . LmxM.11.0720 510 PWLVGSK|RL 0.051 . LmxM.11.0720 511 WLVGSKR|LL 0.176 . LmxM.11.0720 514 GSKRLLK|RR 0.097 . LmxM.11.0720 515 SKRLLKR|RA 0.289 . LmxM.11.0720 516 KRLLKRR|AK 0.137 . LmxM.11.0720 518 LLKRRAK|QF 0.150 . LmxM.11.0720 522 RAKQFLK|SG 0.083 . LmxM.11.0720 535 VVMESPK|AS 0.065 . LmxM.11.0720 551 LVAAVEK|AT 0.070 . LmxM.11.0720 566 TGASAGK|PQ 0.063 . LmxM.11.0720 581 ALPLSPR|TR 0.077 . LmxM.11.0720 583 PLSPRTR|ML 0.145 . LmxM.11.0720 590 MLSTDQR|LG 0.086 . LmxM.11.0720 627 ACNSNMK|AV 0.072 . LmxM.11.0720 636 ILDSPQR|PG 0.066 . LmxM.11.0720 647 TSLPDSK|QR 0.059 . LmxM.11.0720 649 LPDSKQR|TS 0.090 . ____________________________^_________________

  • Fasta :-

    >LmxM.11.0720 ATGCCGCCAAGGCGCTGCCCAAACCGCCTCCTGGTGCTGTGCGCCTCCATCAATGATGTC ACGGCGTGGCCGTTTTGGAAGTTCTTGCAGATGAAGAAGATTCGCGGCGTGACGGACATG GCGCTGCTCGCCTTCAACAGCGACGGCGGCAGCTTCGAGGCCCGCATCGATGGGGACAAA TACCAGCTCAAGAACTATGCCAAGGTTCGCGGCTACCAGCATGACATGTTTGAGAGCTTT GTGCATCGCTGGCACGATCCGGGCCGAAGCTATTTTGTGTATGGCGGGCATGGTATGGGG GACTATGTGGAGCTAGAACAGAACCGTGTTTCGCTGCAGGTGCACGAGCTCGCCGACGTC TTCGGCACGCGTATCTTCGAAGCGGTGCTCTTTGACGCCTGCTTCATGGCGAACCTCGAC TGCGCCTATCATCTGCGCCACAACACGCGGTACATCGGTGCCTGCGAGGGGTACATGTGG GAGCCTGACACGGCCCTCGACTACCATGTCTTCAACACCCACAACGCGAGCGCCATGAGC CGCTTCAAAGACCCGCTGCACATCCTCCGCGTTATTCAGGCGGACTACTGCAGCAAGGCG CCGCGTGGCGACTTCACCATCATCGACACCACGCACATCGCGGAGCTGCGGCAGTACGTG CAGGAGCATGTCATGCAGCGCGTGTATGACCGGGCGACCTTCTACAGCCTACCGCAGCGA GAGCGACTGCAGCAAATCGCCGAGGCGGCGATTCAGGCGTCCATATCCCAGTTTGGCCAC CCCGGCGGTGACACCAACGTGATGAACGGCGTTGGCAGTGGCACTGGCCGCCCGCGCACC GCCTCATTGTCACCCGAGATGCTTGCACTTTCCGCCGCCGGCAGACCGACGCGGCGGCAG AGAATGCTGCAGGCGATTCAGTTCGAGCATTCGCTTTACCCGTCTGAGGTAGACGACAAG CAGCTGCTCGACCTCAAGTCGTATCTCACGGACATGCTGCGGGAGGAGCAGCAGCAAAAG GCGTGGGAGGCAGCGGCGCTGGGGCCGCACCGCCGCATTGCAGCGGGTCGCCGCCGCGTG CGAAGTGATGCACTGGAGCATGGTGGCAGCTCCGGAATTGCCGCCGCCTCCTGTGCCTCG TCCTCCTTCGCCGTCTGGAAGGCGCCACCGTCGCGGGCGCTGTTCGTTGATGAGCACGGG CGACTGCCCGCTGCCAGTTCTGCAGGGTGTGCACTGTCCACCAACGGTGGCCCAGTCGCA GCAACCGACACGCAGGAGGAGGCGACAGCGCTCTGTCCTGCAGCCCTTGCGAGCACTCCA GCGATGGCAGCAGCGCCGCCTCCGTCTCTCTCCACCTCTTACAAGGGCAGCGCGCAGGAG GGGCTAAATCTTTTTCACCAGGTTGTCGTGAGCCAGATCCCACCCAAGGCCGCTTCCATC TACGCGTCCCAGCTCGGCGGGTTATCCTTCACGGTGCACGAGTACAGTGCCATGTCTCGG CCGGCAGAGCCGTGGTTGGTGGGCTCCAAGAGGTTGCTGAAGCGTCGGGCAAAGCAATTC CTGAAGAGCGGCGAACTCTCGGAGGTGGTGATGGAGTCCCCGAAGGCGAGCGTGCCCGTC ACAGGCGCTGCCCTCGTGGCAGCCGTGGAGAAGGCGACAGCAACGGCGGCGGCGGTGACG GGCGCCTCTGCAGGAAAACCCCAGCATGCGACCTCCGTCCCCGCGCTGCCGCTGTCACCC AGAACACGAATGCTCTCCACGGACCAGCGTCTAGGTTTCGCGAGCAGCAGTAATGGCACA GACAGCGACAGCTCCTTGTCGCTCAGCTTGTCCGCACCGCTCTTCACCTCCTCCACGGAT GCGTGCAACAGCAACATGAAGGCAGTAATTCTCGACTCGCCACAGCGGCCTGGCTCCTAT ACATCATTACCCGACTCCAAACAGCGTACAAGCGCTTGCTGA
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  • Fasta :-

    MPPRRCPNRLLVLCASINDVTAWPFWKFLQMKKIRGVTDMALLAFNSDGGSFEARIDGDK YQLKNYAKVRGYQHDMFESFVHRWHDPGRSYFVYGGHGMGDYVELEQNRVSLQVHELADV FGTRIFEAVLFDACFMANLDCAYHLRHNTRYIGACEGYMWEPDTALDYHVFNTHNASAMS RFKDPLHILRVIQADYCSKAPRGDFTIIDTTHIAELRQYVQEHVMQRVYDRATFYSLPQR ERLQQIAEAAIQASISQFGHPGGDTNVMNGVGSGTGRPRTASLSPEMLALSAAGRPTRRQ RMLQAIQFEHSLYPSEVDDKQLLDLKSYLTDMLREEQQQKAWEAAALGPHRRIAAGRRRV RSDALEHGGSSGIAAASCASSSFAVWKAPPSRALFVDEHGRLPAASSAGCALSTNGGPVA ATDTQEEATALCPAALASTPAMAAAPPPSLSTSYKGSAQEGLNLFHQVVVSQIPPKAASI YASQLGGLSFTVHEYSAMSRPAEPWLVGSKRLLKRRAKQFLKSGELSEVVMESPKASVPV TGAALVAAVEKATATAAAVTGASAGKPQHATSVPALPLSPRTRMLSTDQRLGFASSSNGT DSDSSLSLSLSAPLFTSSTDACNSNMKAVILDSPQRPGSYTSLPDSKQRTSAC

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.11.0720533 SVVMESPKAS0.995unspLmxM.11.0720533 SVVMESPKAS0.995unspLmxM.11.0720533 SVVMESPKAS0.995unspLmxM.11.0720639 SQRPGSYTSL0.993unspLmxM.11.0720646 SSLPDSKQRT0.993unspLmxM.11.0720284 STASLSPEML0.996unspLmxM.11.0720453 SSLSTSYKGS0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India