LmxM.12.0240 | hypothetical protein, unknown function

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
LmxM.12.0240OTHER0.5287340.4647980.006468
No Results

  • Fasta :-

    >LmxM.12.0240 MVFTGHCAADVAPMCLVDRMKQRCRGRLPSLLMCAVLFAQLLLCSTSLPVAADATITPLL NITSTDKANPDEYYKILLSQDITILAGSTTVLSNDGVAYPNLNTAKGLRSVFQVPEAPRV QRAPKRTNTALKAFRADVLSEFLVAMALLYLDSTGALPFARTAPIPSTYLPASYTGGASF VNPSFPTVPITLNMLLQHVSSLTETGLDLCAETAPSGTVPTLSAFVSSLFSTTTTTVFSA SQPGLSTSYAYSHVNAAIVAYVVEQVLAASTNYSTLSGIGEFVFTVVMPPLRLSNTFLLN RNGHVIDAAYPFSSGSNHHTVDHVARQVLDGRSTSIPGSVPMQASYFSGYMLFTTAADVA KLAAEVLVPGGLYHTRIGAMMLENMVPIAVPTMRYTEARTTGLFLFSANKLCSTMYAAIS YSGHAPYCRYSPATVSESAPPFGLVAAGGADELAIVCVPVVRSKKTFCSVAELSFSGTAC SSGNAAAARGRAVGLAMVSLAHLTSEPMPEASAPPQQPTAHTFNGWFVFLGVAATLVVVV AASYITDYLIQPPPPAKIIAPVVASQIGLRSGTALNDPVGGGGTVGRSEVPVDGESPEAF RDNGRDHDAEDLYSGADDEEQTPYLARSGGPARGSSSLRRRRRRPRPRRRRDNGEQNSAS DDSYSSGDESWGDNLDSVDRVSTGSQRPNPKSALRFDAYI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/117 Sequence name : 117 Sequence length : 700 VALUES OF COMPUTED PARAMETERS Coef20 : 4.125 CoefTot : -0.207 ChDiff : -2 ZoneTo : 9 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.300 2.571 0.438 0.878 MesoH : 0.907 0.797 -0.023 0.426 MuHd_075 : 14.630 17.604 4.847 4.079 MuHd_095 : 20.781 8.981 6.835 2.572 MuHd_100 : 15.478 6.889 5.138 2.338 MuHd_105 : 7.627 5.227 3.448 1.488 Hmax_075 : 17.900 23.500 5.286 6.510 Hmax_095 : 15.200 15.900 5.407 5.058 Hmax_100 : 14.600 14.900 3.526 5.180 Hmax_105 : 13.800 15.983 4.485 4.912 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9856 0.0144 DFMC : 0.9864 0.0136
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 700 LmxM.12.0240 MVFTGHCAADVAPMCLVDRMKQRCRGRLPSLLMCAVLFAQLLLCSTSLPVAADATITPLLNITSTDKANPDEYYKILLSQ 80 DITILAGSTTVLSNDGVAYPNLNTAKGLRSVFQVPEAPRVQRAPKRTNTALKAFRADVLSEFLVAMALLYLDSTGALPFA 160 RTAPIPSTYLPASYTGGASFVNPSFPTVPITLNMLLQHVSSLTETGLDLCAETAPSGTVPTLSAFVSSLFSTTTTTVFSA 240 SQPGLSTSYAYSHVNAAIVAYVVEQVLAASTNYSTLSGIGEFVFTVVMPPLRLSNTFLLNRNGHVIDAAYPFSSGSNHHT 320 VDHVARQVLDGRSTSIPGSVPMQASYFSGYMLFTTAADVAKLAAEVLVPGGLYHTRIGAMMLENMVPIAVPTMRYTEART 400 TGLFLFSANKLCSTMYAAISYSGHAPYCRYSPATVSESAPPFGLVAAGGADELAIVCVPVVRSKKTFCSVAELSFSGTAC 480 SSGNAAAARGRAVGLAMVSLAHLTSEPMPEASAPPQQPTAHTFNGWFVFLGVAATLVVVVAASYITDYLIQPPPPAKIIA 560 PVVASQIGLRSGTALNDPVGGGGTVGRSEVPVDGESPEAFRDNGRDHDAEDLYSGADDEEQTPYLARSGGPARGSSSLRR 640 RRRRPRPRRRRDNGEQNSASDDSYSSGDESWGDNLDSVDRVSTGSQRPNPKSALRFDAYI 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ........P.P................................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LmxM.12.0240 19 PMCLVDR|MK 0.080 . LmxM.12.0240 21 CLVDRMK|QR 0.064 . LmxM.12.0240 23 VDRMKQR|CR 0.109 . LmxM.12.0240 25 RMKQRCR|GR 0.096 . LmxM.12.0240 27 KQRCRGR|LP 0.086 . LmxM.12.0240 67 NITSTDK|AN 0.056 . LmxM.12.0240 75 NPDEYYK|IL 0.059 . LmxM.12.0240 106 PNLNTAK|GL 0.077 . LmxM.12.0240 109 NTAKGLR|SV 0.259 . LmxM.12.0240 119 QVPEAPR|VQ 0.071 . LmxM.12.0240 122 EAPRVQR|AP 0.196 . LmxM.12.0240 125 RVQRAPK|RT 0.197 . LmxM.12.0240 126 VQRAPKR|TN 0.162 . LmxM.12.0240 132 RTNTALK|AF 0.073 . LmxM.12.0240 135 TALKAFR|AD 0.085 . LmxM.12.0240 161 GALPFAR|TA 0.083 . LmxM.12.0240 292 VVMPPLR|LS 0.073 . LmxM.12.0240 301 NTFLLNR|NG 0.072 . LmxM.12.0240 326 TVDHVAR|QV 0.241 . LmxM.12.0240 332 RQVLDGR|ST 0.129 . LmxM.12.0240 361 TAADVAK|LA 0.087 . LmxM.12.0240 376 GGLYHTR|IG 0.091 . LmxM.12.0240 394 IAVPTMR|YT 0.141 . LmxM.12.0240 399 MRYTEAR|TT 0.165 . LmxM.12.0240 410 FLFSANK|LC 0.058 . LmxM.12.0240 429 GHAPYCR|YS 0.096 . LmxM.12.0240 462 VCVPVVR|SK 0.097 . LmxM.12.0240 464 VPVVRSK|KT 0.067 . LmxM.12.0240 465 PVVRSKK|TF 0.233 . LmxM.12.0240 489 GNAAAAR|GR 0.148 . LmxM.12.0240 491 AAAARGR|AV 0.170 . LmxM.12.0240 557 QPPPPAK|II 0.075 . LmxM.12.0240 570 ASQIGLR|SG 0.101 . LmxM.12.0240 587 GGGTVGR|SE 0.142 . LmxM.12.0240 601 ESPEAFR|DN 0.105 . LmxM.12.0240 605 AFRDNGR|DH 0.112 . LmxM.12.0240 627 QTPYLAR|SG 0.181 . LmxM.12.0240 633 RSGGPAR|GS 0.119 . LmxM.12.0240 639 RGSSSLR|RR 0.076 . LmxM.12.0240 640 GSSSLRR|RR 0.127 . LmxM.12.0240 641 SSSLRRR|RR 0.138 . LmxM.12.0240 642 SSLRRRR|RR 0.223 . LmxM.12.0240 643 SLRRRRR|RP 0.397 . LmxM.12.0240 644 LRRRRRR|PR 0.428 . LmxM.12.0240 646 RRRRRPR|PR 0.274 . LmxM.12.0240 648 RRRPRPR|RR 0.124 . LmxM.12.0240 649 RRPRPRR|RR 0.589 *ProP* LmxM.12.0240 650 RPRPRRR|RD 0.187 . LmxM.12.0240 651 PRPRRRR|DN 0.713 *ProP* LmxM.12.0240 680 NLDSVDR|VS 0.075 . LmxM.12.0240 687 VSTGSQR|PN 0.077 . LmxM.12.0240 691 SQRPNPK|SA 0.088 . LmxM.12.0240 695 NPKSALR|FD 0.091 . ____________________________^_________________

  • Fasta :-

    >LmxM.12.0240 ATGGTCTTCACGGGTCATTGCGCTGCAGATGTCGCACCGATGTGCCTCGTCGACCGCATG AAGCAACGTTGTAGGGGTCGGCTGCCGTCCCTGCTCATGTGCGCGGTGCTCTTCGCGCAG CTTCTCCTCTGCAGCACCTCCCTGCCCGTCGCGGCCGACGCGACCATCACGCCCCTCCTC AACATCACCTCCACCGACAAGGCGAACCCCGATGAGTACTACAAGATATTGCTCTCCCAA GACATCACCATCCTTGCGGGCAGCACCACCGTCCTCAGCAACGACGGAGTCGCCTACCCG AACCTCAACACAGCTAAAGGGCTTCGATCCGTCTTCCAGGTTCCTGAGGCGCCAAGGGTG CAGCGCGCTCCTAAGCGAACCAACACGGCCTTGAAGGCCTTCCGCGCCGACGTCCTGTCG GAGTTCCTCGTAGCGATGGCACTCCTCTACCTCGACTCCACCGGCGCGCTGCCCTTCGCA CGCACGGCGCCGATCCCGTCCACGTACCTGCCAGCCTCCTACACGGGCGGCGCCAGCTTC GTCAACCCGTCGTTTCCCACCGTGCCCATCACCCTCAACATGCTGCTGCAGCACGTCTCC TCGCTCACCGAGACGGGCCTCGACCTTTGCGCCGAAACGGCGCCGTCCGGCACTGTGCCG ACCCTCTCGGCCTTTGTCAGCTCCCTCTTCTCCACCACGACCACAACAGTGTTCAGCGCT AGCCAGCCGGGGCTGTCTACCAGCTACGCCTACTCGCATGTCAACGCGGCGATCGTCGCC TACGTGGTCGAGCAGGTCTTGGCTGCATCGACGAACTACTCGACGCTCTCCGGCATCGGC GAGTTCGTCTTCACCGTCGTGATGCCGCCGCTGCGGCTGTCGAACACGTTTTTGCTGAAC CGCAACGGTCACGTCATCGACGCGGCCTACCCCTTCAGTAGCGGCAGCAACCACCACACG GTGGATCACGTCGCCCGCCAAGTCCTTGACGGCCGCAGCACCAGCATCCCGGGCAGCGTT CCGATGCAAGCCTCATACTTCTCCGGCTACATGCTCTTTACGACCGCCGCAGACGTGGCG AAGTTGGCGGCAGAGGTGCTCGTGCCGGGCGGCCTCTACCACACGCGAATTGGTGCCATG ATGCTTGAGAACATGGTGCCCATTGCCGTGCCCACGATGCGCTACACGGAGGCACGCACA ACCGGCCTCTTCCTGTTCAGCGCGAACAAGCTGTGCTCTACAATGTACGCCGCCATCTCC TACAGCGGTCATGCGCCGTACTGCCGCTACAGCCCCGCGACCGTGTCCGAGTCAGCGCCG CCCTTCGGGCTGGTCGCCGCAGGTGGCGCGGATGAGCTCGCCATCGTGTGCGTCCCCGTC GTGCGCAGCAAGAAAACGTTCTGCTCAGTCGCGGAGCTTTCCTTCTCAGGCACAGCCTGC AGCAGCGGCAACGCGGCAGCGGCGAGGGGCCGTGCCGTCGGCCTTGCCATGGTGAGCCTG GCGCACTTGACGAGTGAGCCGATGCCAGAGGCGTCAGCCCCGCCGCAGCAGCCGACAGCT CACACGTTTAACGGGTGGTTCGTGTTCCTTGGGGTGGCCGCCACACTGGTGGTCGTGGTC GCCGCCTCCTACATCACTGACTACCTCATCCAGCCGCCGCCGCCAGCGAAGATTATAGCA CCCGTCGTGGCGAGTCAGATCGGCCTGCGGAGCGGCACCGCGCTGAACGACCCCGTCGGC GGCGGCGGCACAGTCGGCCGCTCGGAAGTACCCGTTGACGGTGAGTCCCCCGAGGCGTTC CGCGATAACGGTAGAGACCATGATGCGGAGGACTTGTACAGTGGTGCAGACGACGAGGAG CAGACGCCGTACCTCGCGCGTAGCGGTGGCCCTGCTCGCGGCAGCTCGTCACTGCGGCGG CGGCGCCGGCGCCCGCGCCCGCGTCGGCGTCGTGACAACGGCGAGCAGAATTCGGCCAGT GACGACTCCTATTCTAGTGGCGACGAGAGCTGGGGCGATAACCTGGACAGCGTCGATCGC GTCTCCACGGGGTCGCAGCGGCCGAACCCGAAAAGTGCTCTGCGGTTTGATGCCTACATA TAG
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  • Fasta :-

    MVFTGHCAADVAPMCLVDRMKQRCRGRLPSLLMCAVLFAQLLLCSTSLPVAADATITPLL NITSTDKANPDEYYKILLSQDITILAGSTTVLSNDGVAYPNLNTAKGLRSVFQVPEAPRV QRAPKRTNTALKAFRADVLSEFLVAMALLYLDSTGALPFARTAPIPSTYLPASYTGGASF VNPSFPTVPITLNMLLQHVSSLTETGLDLCAETAPSGTVPTLSAFVSSLFSTTTTTVFSA SQPGLSTSYAYSHVNAAIVAYVVEQVLAASTNYSTLSGIGEFVFTVVMPPLRLSNTFLLN RNGHVIDAAYPFSSGSNHHTVDHVARQVLDGRSTSIPGSVPMQASYFSGYMLFTTAADVA KLAAEVLVPGGLYHTRIGAMMLENMVPIAVPTMRYTEARTTGLFLFSANKLCSTMYAAIS YSGHAPYCRYSPATVSESAPPFGLVAAGGADELAIVCVPVVRSKKTFCSVAELSFSGTAC SSGNAAAARGRAVGLAMVSLAHLTSEPMPEASAPPQQPTAHTFNGWFVFLGVAATLVVVV AASYITDYLIQPPPPAKIIAPVVASQIGLRSGTALNDPVGGGGTVGRSEVPVDGESPEAF RDNGRDHDAEDLYSGADDEEQTPYLARSGGPARGSSSLRRRRRRPRPRRRRDNGEQNSAS DDSYSSGDESWGDNLDSVDRVSTGSQRPNPKSALRFDAYI

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.12.0240663 SASDDSYSSG0.993unspLmxM.12.0240663 SASDDSYSSG0.993unspLmxM.12.0240663 SASDDSYSSG0.993unspLmxM.12.0240665 SDDSYSSGDE0.995unspLmxM.12.0240670 SSGDESWGDN0.997unspLmxM.12.0240682 SVDRVSTGSQ0.997unspLmxM.12.0240596 SVDGESPEAF0.995unspLmxM.12.0240622 TDEEQTPYLA0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India