LmxM.12.1330 | Alpha/beta hydrolase domain-containing protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.12.1330OTHER0.9747630.0018790.023358
No Results

  • Fasta :-

    >LmxM.12.1330 MVVMASRLDAFVKSIIFPRPKNATYDTSTHPSKLVHIPLVDPHRHVENGAFTYGYLLANP KATHVLLYAHPNAVDIGMAYKELRYVSKEASISVLLFEYSGYGLTHTPITEASIHQDTLS AYLFLRRYFGVPANRVILCGRSLGASPAAFLAAFLPPLQRPCLLILQCPFTALSECINEF SQNAVSIANFLGYNWFRTIDIITDVSCPVVLHHGTNDTTVRIDHSYALQRARDTAAKPCV TYLYQEDGKGHNNLSSATLVRILRERVVTEALLPLLLPQSKLFLANASVYARLFCDDSGM GFATLSDAVASWLAKLSLHFCAPPLDQLYVLLTASVCTFTMECARAWQVYCALIRKNLCG DAVHERCSKDVFLHRCLACWGSPLGVHIAVERVNSTKEVRCFGFATCRDAMLDAPALYPA KSTEALLSVLEIGVTPGLLSCMKRCLTTAPDMLQEEEMPCFVQHDTVSAVQLECERVVAF LTEEDKKRLCALLKDMDAGFSNNLSNKAYERLQRSPSTSLQMSSESFEELKEWLRPWTST RGTDMHALAQEVPWDDYLLRSRSVARQHVLNETMSWEECCLAMEESEVVSKIYTLFQEMS AQYLRPTFHSHVTGTVGSRA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/882 Sequence name : 882 Sequence length : 620 VALUES OF COMPUTED PARAMETERS Coef20 : 4.602 CoefTot : -1.089 ChDiff : -6 ZoneTo : 40 KR : 5 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.659 1.653 0.305 0.611 MesoH : 0.334 0.853 -0.081 0.354 MuHd_075 : 21.385 17.818 6.859 5.240 MuHd_095 : 31.902 18.079 9.304 5.172 MuHd_100 : 33.885 16.607 9.799 5.822 MuHd_105 : 31.473 15.380 9.076 5.903 Hmax_075 : 17.150 19.833 -2.383 4.950 Hmax_095 : 8.750 17.100 0.080 2.083 Hmax_100 : 9.000 5.200 0.543 2.960 Hmax_105 : 4.200 1.167 -2.235 2.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9002 0.0998 DFMC : 0.8359 0.1641
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 620 LmxM.12.1330 MVVMASRLDAFVKSIIFPRPKNATYDTSTHPSKLVHIPLVDPHRHVENGAFTYGYLLANPKATHVLLYAHPNAVDIGMAY 80 KELRYVSKEASISVLLFEYSGYGLTHTPITEASIHQDTLSAYLFLRRYFGVPANRVILCGRSLGASPAAFLAAFLPPLQR 160 PCLLILQCPFTALSECINEFSQNAVSIANFLGYNWFRTIDIITDVSCPVVLHHGTNDTTVRIDHSYALQRARDTAAKPCV 240 TYLYQEDGKGHNNLSSATLVRILRERVVTEALLPLLLPQSKLFLANASVYARLFCDDSGMGFATLSDAVASWLAKLSLHF 320 CAPPLDQLYVLLTASVCTFTMECARAWQVYCALIRKNLCGDAVHERCSKDVFLHRCLACWGSPLGVHIAVERVNSTKEVR 400 CFGFATCRDAMLDAPALYPAKSTEALLSVLEIGVTPGLLSCMKRCLTTAPDMLQEEEMPCFVQHDTVSAVQLECERVVAF 480 LTEEDKKRLCALLKDMDAGFSNNLSNKAYERLQRSPSTSLQMSSESFEELKEWLRPWTSTRGTDMHALAQEVPWDDYLLR 560 SRSVARQHVLNETMSWEECCLAMEESEVVSKIYTLFQEMSAQYLRPTFHSHVTGTVGSRA 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............................................................ 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.12.1330 7 MVVMASR|LD 0.069 . LmxM.12.1330 13 RLDAFVK|SI 0.081 . LmxM.12.1330 19 KSIIFPR|PK 0.107 . LmxM.12.1330 21 IIFPRPK|NA 0.068 . LmxM.12.1330 33 TSTHPSK|LV 0.084 . LmxM.12.1330 44 PLVDPHR|HV 0.159 . LmxM.12.1330 61 YLLANPK|AT 0.065 . LmxM.12.1330 81 DIGMAYK|EL 0.063 . LmxM.12.1330 84 MAYKELR|YV 0.193 . LmxM.12.1330 88 ELRYVSK|EA 0.085 . LmxM.12.1330 126 SAYLFLR|RY 0.099 . LmxM.12.1330 127 AYLFLRR|YF 0.109 . LmxM.12.1330 135 FGVPANR|VI 0.074 . LmxM.12.1330 141 RVILCGR|SL 0.188 . LmxM.12.1330 160 FLPPLQR|PC 0.073 . LmxM.12.1330 197 LGYNWFR|TI 0.118 . LmxM.12.1330 221 TNDTTVR|ID 0.087 . LmxM.12.1330 230 HSYALQR|AR 0.095 . LmxM.12.1330 232 YALQRAR|DT 0.122 . LmxM.12.1330 237 ARDTAAK|PC 0.071 . LmxM.12.1330 249 LYQEDGK|GH 0.058 . LmxM.12.1330 261 SSATLVR|IL 0.111 . LmxM.12.1330 264 TLVRILR|ER 0.150 . LmxM.12.1330 266 VRILRER|VV 0.120 . LmxM.12.1330 281 LLLPQSK|LF 0.055 . LmxM.12.1330 292 NASVYAR|LF 0.106 . LmxM.12.1330 315 VASWLAK|LS 0.059 . LmxM.12.1330 345 FTMECAR|AW 0.086 . LmxM.12.1330 355 VYCALIR|KN 0.071 . LmxM.12.1330 356 YCALIRK|NL 0.075 . LmxM.12.1330 366 GDAVHER|CS 0.121 . LmxM.12.1330 369 VHERCSK|DV 0.159 . LmxM.12.1330 375 KDVFLHR|CL 0.084 . LmxM.12.1330 392 VHIAVER|VN 0.092 . LmxM.12.1330 397 ERVNSTK|EV 0.090 . LmxM.12.1330 400 NSTKEVR|CF 0.092 . LmxM.12.1330 408 FGFATCR|DA 0.094 . LmxM.12.1330 421 PALYPAK|ST 0.093 . LmxM.12.1330 443 GLLSCMK|RC 0.057 . LmxM.12.1330 444 LLSCMKR|CL 0.368 . LmxM.12.1330 476 VQLECER|VV 0.068 . LmxM.12.1330 486 FLTEEDK|KR 0.052 . LmxM.12.1330 487 LTEEDKK|RL 0.097 . LmxM.12.1330 488 TEEDKKR|LC 0.147 . LmxM.12.1330 494 RLCALLK|DM 0.082 . LmxM.12.1330 507 SNNLSNK|AY 0.089 . LmxM.12.1330 511 SNKAYER|LQ 0.072 . LmxM.12.1330 514 AYERLQR|SP 0.438 . LmxM.12.1330 531 ESFEELK|EW 0.056 . LmxM.12.1330 535 ELKEWLR|PW 0.075 . LmxM.12.1330 541 RPWTSTR|GT 0.132 . LmxM.12.1330 560 WDDYLLR|SR 0.140 . LmxM.12.1330 562 DYLLRSR|SV 0.116 . LmxM.12.1330 566 RSRSVAR|QH 0.115 . LmxM.12.1330 591 ESEVVSK|IY 0.064 . LmxM.12.1330 605 MSAQYLR|PT 0.104 . LmxM.12.1330 619 TGTVGSR|A- 0.085 . ____________________________^_________________

  • Fasta :-

    >LmxM.12.1330 ATGGTAGTCATGGCCAGCCGTCTAGACGCCTTCGTTAAATCGATCATTTTCCCTCGCCCT AAAAACGCCACCTACGACACCTCCACTCATCCCAGCAAGCTCGTGCACATACCGCTAGTC GACCCACACCGACACGTCGAAAACGGCGCCTTCACCTACGGCTACCTGCTGGCAAATCCC AAGGCAACTCATGTACTCCTGTACGCCCACCCCAATGCCGTAGACATCGGCATGGCCTAC AAGGAGCTCCGCTACGTGAGCAAAGAGGCCTCCATCAGCGTGCTACTGTTCGAGTACTCG GGCTACGGGCTCACCCACACCCCCATAACAGAAGCCAGCATTCACCAGGACACGCTTTCC GCCTACCTCTTCCTGCGCCGCTACTTTGGCGTGCCAGCGAACCGCGTAATTCTCTGCGGC CGCTCTCTCGGGGCTTCTCCCGCCGCATTTCTGGCCGCCTTCCTTCCACCGCTCCAGCGG CCATGCTTGCTTATTCTCCAGTGCCCCTTCACCGCGCTTAGCGAGTGCATCAACGAGTTC TCGCAGAACGCCGTGTCCATCGCGAACTTTCTAGGGTACAACTGGTTTCGAACTATCGAT ATCATCACGGACGTGAGTTGCCCGGTCGTGCTTCACCACGGCACTAACGATACCACTGTC AGGATCGACCACTCCTACGCTCTCCAGCGGGCCCGCGACACCGCTGCGAAACCGTGCGTC ACCTACCTTTACCAAGAGGACGGGAAAGGCCACAACAACCTCAGCTCCGCCACTTTGGTG CGCATTCTTCGAGAGCGTGTCGTCACGGAGGCTCTGCTGCCGCTGCTACTGCCCCAATCG AAGCTGTTCTTGGCGAACGCATCTGTCTACGCGCGGCTTTTCTGCGACGATAGCGGAATG GGGTTTGCCACGCTCAGCGACGCTGTGGCATCCTGGTTGGCAAAGCTGTCCCTCCACTTT TGCGCACCGCCGCTTGATCAGCTGTATGTACTACTGACAGCAAGCGTCTGCACCTTCACG ATGGAGTGCGCGCGGGCGTGGCAGGTTTACTGCGCGCTCATCAGGAAGAACTTATGTGGC GACGCGGTACACGAGCGATGCTCCAAGGATGTGTTTCTTCATCGGTGCCTGGCGTGCTGG GGGAGCCCCCTTGGCGTCCACATCGCTGTCGAGCGCGTAAACTCGACGAAGGAGGTCCGC TGCTTCGGCTTTGCCACTTGCCGTGACGCGATGCTGGACGCACCGGCTTTGTACCCGGCA AAGTCCACGGAGGCGCTGCTAAGCGTGCTAGAAATTGGTGTCACGCCAGGGCTGCTGTCG TGCATGAAGCGGTGCCTCACCACCGCCCCCGACATGCTGCAAGAGGAGGAGATGCCATGC TTTGTGCAGCACGACACGGTAAGCGCGGTGCAGCTGGAGTGTGAGCGTGTCGTGGCTTTT CTGACCGAGGAAGACAAGAAGCGTCTGTGTGCCTTGCTAAAAGACATGGACGCCGGCTTC AGCAACAATCTGTCCAACAAGGCTTATGAGCGGCTGCAGCGTTCACCGTCCACGTCTCTC CAAATGAGCTCGGAGTCGTTCGAAGAGCTGAAGGAGTGGCTGCGGCCGTGGACCTCCACA CGCGGAACAGACATGCATGCACTGGCACAGGAGGTACCGTGGGATGACTATCTGCTGCGC AGTCGGTCCGTTGCTCGACAGCACGTGCTTAATGAGACCATGAGCTGGGAGGAGTGCTGC CTGGCCATGGAGGAGAGCGAAGTGGTTTCCAAAATCTACACCCTCTTTCAGGAAATGTCA GCCCAATACCTGCGGCCGACCTTTCACTCTCACGTCACTGGGACGGTGGGATCCCGTGCA TAA
  • Download Fasta

  • Fasta :-

    MVVMASRLDAFVKSIIFPRPKNATYDTSTHPSKLVHIPLVDPHRHVENGAFTYGYLLANP KATHVLLYAHPNAVDIGMAYKELRYVSKEASISVLLFEYSGYGLTHTPITEASIHQDTLS AYLFLRRYFGVPANRVILCGRSLGASPAAFLAAFLPPLQRPCLLILQCPFTALSECINEF SQNAVSIANFLGYNWFRTIDIITDVSCPVVLHHGTNDTTVRIDHSYALQRARDTAAKPCV TYLYQEDGKGHNNLSSATLVRILRERVVTEALLPLLLPQSKLFLANASVYARLFCDDSGM GFATLSDAVASWLAKLSLHFCAPPLDQLYVLLTASVCTFTMECARAWQVYCALIRKNLCG DAVHERCSKDVFLHRCLACWGSPLGVHIAVERVNSTKEVRCFGFATCRDAMLDAPALYPA KSTEALLSVLEIGVTPGLLSCMKRCLTTAPDMLQEEEMPCFVQHDTVSAVQLECERVVAF LTEEDKKRLCALLKDMDAGFSNNLSNKAYERLQRSPSTSLQMSSESFEELKEWLRPWTST RGTDMHALAQEVPWDDYLLRSRSVARQHVLNETMSWEECCLAMEESEVVSKIYTLFQEMS AQYLRPTFHSHVTGTVGSRA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.12.1330523 SSLQMSSESF0.994unspLmxM.12.1330523 SSLQMSSESF0.994unspLmxM.12.1330523 SSLQMSSESF0.994unspLmxM.12.1330526 SMSSESFEEL0.995unspLmxM.12.1330575 SNETMSWEEC0.992unspLmxM.12.133087 SLRYVSKEAS0.994unspLmxM.12.1330395 SERVNSTKEV0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India