LmxM.13.0680 | Metallopeptidase family M24, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005634      

  • Curated_GO_Components:  nucleus      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.13.0680OTHER0.9996130.0000050.000383
No Results

  • Fasta :-

    >LmxM.13.0680 MGRGYSASRSKSGRPTLRMKRSRSMSLHALKKNMDAHEAAKVAKAAKAANSGSAEASSSF SAAVTEVPRKALKVLRQRRAPSSLVSSSSAAAATKVKSADDRGRTAAASASPRSQSAAFR RNLENLEKQFDDAMEASEDEDETVMNTTTMTKYKECGRVVDAVLDQLSAACVPGANTKTL CDTGDEAIASRLRGLFVKTKGADGKRLARGISYPTNVSVNEMLCNDSPYRVEDGAILKDG DVVKLHVGCHLDGYPVSAARTVVVTTKAASAATEGDEEEAQRKRSSTGATLSSRSAVGNT IEAARVALLAMMHALRPGTLNADITDLIAAVGHHYGVQAVEGVLSNRGKRWVPDGIDCII ARRVTSEDPHQDVADCEVGEHQVWCLDVAFTNNHNYRITLSEKPVTLFRRTPADFNVDAR VAQASETLQEITDTHFCFPFHFKSLANPLRGKMGIHVLTRKGVVDKLPPLRTKHGYVTAR FSATVAVTAKRVTVLCGAPPTTPVATPPAMRPTVSEDTLAAEVLAVLRRPYEFADVRAAV TAKGAKGQNSPATKRMRVEALENEE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/762 Sequence name : 762 Sequence length : 565 VALUES OF COMPUTED PARAMETERS Coef20 : 4.305 CoefTot : 0.257 ChDiff : 15 ZoneTo : 34 KR : 10 DE : 0 CleavSite : 25 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.282 1.224 0.159 0.475 MesoH : -0.491 0.353 -0.316 0.184 MuHd_075 : 33.252 12.896 6.358 6.475 MuHd_095 : 35.748 11.424 7.575 6.993 MuHd_100 : 29.550 11.506 7.256 5.430 MuHd_105 : 36.388 15.065 9.356 6.500 Hmax_075 : 2.100 6.600 -1.817 0.814 Hmax_095 : 5.900 -2.100 -0.862 1.090 Hmax_100 : 5.900 2.600 -2.020 1.090 Hmax_105 : 10.967 2.800 -0.175 1.937 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0189 0.9811 DFMC : 0.0067 0.9933 This protein is probably imported in mitochondria. f(Ser) = 0.2059 f(Arg) = 0.1765 CMi = 0.64935 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 565 LmxM.13.0680 MGRGYSASRSKSGRPTLRMKRSRSMSLHALKKNMDAHEAAKVAKAAKAANSGSAEASSSFSAAVTEVPRKALKVLRQRRA 80 PSSLVSSSSAAAATKVKSADDRGRTAAASASPRSQSAAFRRNLENLEKQFDDAMEASEDEDETVMNTTTMTKYKECGRVV 160 DAVLDQLSAACVPGANTKTLCDTGDEAIASRLRGLFVKTKGADGKRLARGISYPTNVSVNEMLCNDSPYRVEDGAILKDG 240 DVVKLHVGCHLDGYPVSAARTVVVTTKAASAATEGDEEEAQRKRSSTGATLSSRSAVGNTIEAARVALLAMMHALRPGTL 320 NADITDLIAAVGHHYGVQAVEGVLSNRGKRWVPDGIDCIIARRVTSEDPHQDVADCEVGEHQVWCLDVAFTNNHNYRITL 400 SEKPVTLFRRTPADFNVDARVAQASETLQEITDTHFCFPFHFKSLANPLRGKMGIHVLTRKGVVDKLPPLRTKHGYVTAR 480 FSATVAVTAKRVTVLCGAPPTTPVATPPAMRPTVSEDTLAAEVLAVLRRPYEFADVRAAVTAKGAKGQNSPATKRMRVEA 560 LENEE 640 ....................P........................................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................P.................................................. 400 ................................................................................ 480 ................................................................................ 560 ..... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LmxM.13.0680 3 ----MGR|GY 0.125 . LmxM.13.0680 9 RGYSASR|SK 0.113 . LmxM.13.0680 11 YSASRSK|SG 0.091 . LmxM.13.0680 14 SRSKSGR|PT 0.153 . LmxM.13.0680 18 SGRPTLR|MK 0.085 . LmxM.13.0680 20 RPTLRMK|RS 0.060 . LmxM.13.0680 21 PTLRMKR|SR 0.666 *ProP* LmxM.13.0680 23 LRMKRSR|SM 0.164 . LmxM.13.0680 31 MSLHALK|KN 0.065 . LmxM.13.0680 32 SLHALKK|NM 0.157 . LmxM.13.0680 41 DAHEAAK|VA 0.074 . LmxM.13.0680 44 EAAKVAK|AA 0.116 . LmxM.13.0680 47 KVAKAAK|AA 0.082 . LmxM.13.0680 69 AVTEVPR|KA 0.100 . LmxM.13.0680 70 VTEVPRK|AL 0.074 . LmxM.13.0680 73 VPRKALK|VL 0.063 . LmxM.13.0680 76 KALKVLR|QR 0.076 . LmxM.13.0680 78 LKVLRQR|RA 0.087 . LmxM.13.0680 79 KVLRQRR|AP 0.355 . LmxM.13.0680 95 SAAAATK|VK 0.068 . LmxM.13.0680 97 AAATKVK|SA 0.134 . LmxM.13.0680 102 VKSADDR|GR 0.118 . LmxM.13.0680 104 SADDRGR|TA 0.103 . LmxM.13.0680 113 AASASPR|SQ 0.234 . LmxM.13.0680 120 SQSAAFR|RN 0.097 . LmxM.13.0680 121 QSAAFRR|NL 0.286 . LmxM.13.0680 128 NLENLEK|QF 0.071 . LmxM.13.0680 152 NTTTMTK|YK 0.063 . LmxM.13.0680 154 TTMTKYK|EC 0.100 . LmxM.13.0680 158 KYKECGR|VV 0.144 . LmxM.13.0680 178 VPGANTK|TL 0.070 . LmxM.13.0680 191 DEAIASR|LR 0.080 . LmxM.13.0680 193 AIASRLR|GL 0.094 . LmxM.13.0680 198 LRGLFVK|TK 0.080 . LmxM.13.0680 200 GLFVKTK|GA 0.093 . LmxM.13.0680 205 TKGADGK|RL 0.075 . LmxM.13.0680 206 KGADGKR|LA 0.161 . LmxM.13.0680 209 DGKRLAR|GI 0.261 . LmxM.13.0680 230 CNDSPYR|VE 0.073 . LmxM.13.0680 238 EDGAILK|DG 0.066 . LmxM.13.0680 244 KDGDVVK|LH 0.059 . LmxM.13.0680 260 YPVSAAR|TV 0.101 . LmxM.13.0680 267 TVVVTTK|AA 0.092 . LmxM.13.0680 282 DEEEAQR|KR 0.084 . LmxM.13.0680 283 EEEAQRK|RS 0.089 . LmxM.13.0680 284 EEAQRKR|SS 0.366 . LmxM.13.0680 294 GATLSSR|SA 0.123 . LmxM.13.0680 305 NTIEAAR|VA 0.091 . LmxM.13.0680 316 AMMHALR|PG 0.070 . LmxM.13.0680 347 EGVLSNR|GK 0.097 . LmxM.13.0680 349 VLSNRGK|RW 0.072 . LmxM.13.0680 350 LSNRGKR|WV 0.827 *ProP* LmxM.13.0680 362 IDCIIAR|RV 0.122 . LmxM.13.0680 363 DCIIARR|VT 0.111 . LmxM.13.0680 397 TNNHNYR|IT 0.119 . LmxM.13.0680 403 RITLSEK|PV 0.071 . LmxM.13.0680 409 KPVTLFR|RT 0.079 . LmxM.13.0680 410 PVTLFRR|TP 0.101 . LmxM.13.0680 420 DFNVDAR|VA 0.143 . LmxM.13.0680 443 CFPFHFK|SL 0.086 . LmxM.13.0680 450 SLANPLR|GK 0.114 . LmxM.13.0680 452 ANPLRGK|MG 0.064 . LmxM.13.0680 460 GIHVLTR|KG 0.069 . LmxM.13.0680 461 IHVLTRK|GV 0.121 . LmxM.13.0680 466 RKGVVDK|LP 0.059 . LmxM.13.0680 471 DKLPPLR|TK 0.079 . LmxM.13.0680 473 LPPLRTK|HG 0.060 . LmxM.13.0680 480 HGYVTAR|FS 0.135 . LmxM.13.0680 490 TVAVTAK|RV 0.084 . LmxM.13.0680 491 VAVTAKR|VT 0.109 . LmxM.13.0680 511 ATPPAMR|PT 0.076 . LmxM.13.0680 528 EVLAVLR|RP 0.061 . LmxM.13.0680 529 VLAVLRR|PY 0.130 . LmxM.13.0680 537 YEFADVR|AA 0.087 . LmxM.13.0680 543 RAAVTAK|GA 0.108 . LmxM.13.0680 546 VTAKGAK|GQ 0.058 . LmxM.13.0680 554 QNSPATK|RM 0.065 . LmxM.13.0680 555 NSPATKR|MR 0.156 . LmxM.13.0680 557 PATKRMR|VE 0.071 . ____________________________^_________________

  • Fasta :-

    >LmxM.13.0680 ATGGGCCGCGGGTACAGTGCCAGCCGTAGCAAGAGCGGCCGTCCGACGCTGCGGATGAAG CGCTCCCGTTCCATGTCGCTGCACGCGCTGAAGAAGAACATGGACGCACACGAGGCGGCC AAGGTGGCCAAGGCGGCCAAGGCGGCCAACAGCGGCAGCGCCGAGGCGTCGTCGTCGTTC TCTGCCGCGGTGACCGAGGTGCCGCGCAAGGCGCTCAAGGTGTTGCGCCAGCGTCGCGCG CCGTCTTCGTTGGTTTCATCGTCCTCAGCAGCAGCGGCAACGAAGGTCAAGTCCGCCGAC GACCGCGGTCGCACCGCAGCAGCTAGCGCCAGCCCTCGCTCGCAGTCCGCCGCCTTTCGC CGCAACCTGGAAAACCTCGAAAAGCAGTTCGACGACGCCATGGAGGCCAGCGAGGACGAG GACGAGACCGTCATGAACACCACGACCATGACCAAGTACAAGGAGTGCGGCCGCGTTGTC GACGCTGTGCTGGATCAGCTCTCGGCGGCGTGCGTACCCGGCGCGAACACAAAAACGCTG TGCGACACAGGCGACGAGGCGATCGCGAGCCGACTGAGAGGGCTCTTCGTGAAGACCAAG GGCGCGGATGGAAAGCGGTTGGCGCGCGGCATCTCGTACCCGACGAACGTGTCCGTGAAC GAAATGCTGTGCAACGACAGCCCATACCGCGTGGAGGACGGCGCCATCTTGAAGGACGGC GACGTCGTGAAGCTGCACGTTGGCTGCCACCTCGACGGCTACCCAGTGAGCGCCGCGCGC ACGGTCGTCGTCACCACGAAAGCGGCTTCCGCGGCTACGGAGGGCGACGAGGAGGAGGCG CAGAGAAAGAGAAGCAGCACAGGGGCGACGTTGTCGTCGCGCTCAGCCGTTGGCAACACC ATCGAGGCGGCACGCGTGGCACTGCTGGCGATGATGCACGCGCTGCGCCCTGGCACACTC AACGCCGACATCACGGACCTCATCGCCGCTGTCGGGCATCATTACGGTGTGCAGGCTGTG GAGGGCGTGCTGTCGAACCGGGGCAAGCGCTGGGTGCCGGATGGGATTGACTGTATCATT GCCCGCCGCGTGACGAGCGAGGACCCGCATCAGGACGTGGCCGACTGCGAGGTGGGCGAG CATCAGGTTTGGTGCCTCGACGTTGCCTTCACTAACAACCACAACTACCGCATCACGCTC TCTGAGAAGCCCGTGACACTGTTCCGCCGCACCCCTGCCGACTTCAACGTGGACGCGCGG GTGGCGCAGGCGAGTGAGACACTGCAGGAGATCACCGACACTCATTTTTGTTTTCCGTTC CACTTCAAGAGCCTCGCAAACCCGCTAAGGGGGAAGATGGGCATCCACGTGTTGACGAGG AAGGGTGTCGTGGACAAGCTGCCCCCGCTGCGCACGAAGCACGGCTACGTGACGGCGCGG TTTAGTGCAACTGTGGCGGTGACGGCGAAGCGGGTGACGGTGCTGTGCGGCGCGCCGCCC ACCACCCCTGTGGCGACGCCGCCGGCAATGCGGCCCACCGTGTCGGAGGACACATTGGCG GCCGAGGTGCTTGCGGTGCTGAGACGCCCGTACGAGTTCGCCGATGTGCGCGCGGCAGTG ACGGCGAAAGGCGCGAAGGGCCAGAACAGCCCCGCCACGAAACGCATGCGCGTAGAGGCG CTGGAGAACGAAGAGTAG
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  • Fasta :-

    MGRGYSASRSKSGRPTLRMKRSRSMSLHALKKNMDAHEAAKVAKAAKAANSGSAEASSSF SAAVTEVPRKALKVLRQRRAPSSLVSSSSAAAATKVKSADDRGRTAAASASPRSQSAAFR RNLENLEKQFDDAMEASEDEDETVMNTTTMTKYKECGRVVDAVLDQLSAACVPGANTKTL CDTGDEAIASRLRGLFVKTKGADGKRLARGISYPTNVSVNEMLCNDSPYRVEDGAILKDG DVVKLHVGCHLDGYPVSAARTVVVTTKAASAATEGDEEEAQRKRSSTGATLSSRSAVGNT IEAARVALLAMMHALRPGTLNADITDLIAAVGHHYGVQAVEGVLSNRGKRWVPDGIDCII ARRVTSEDPHQDVADCEVGEHQVWCLDVAFTNNHNYRITLSEKPVTLFRRTPADFNVDAR VAQASETLQEITDTHFCFPFHFKSLANPLRGKMGIHVLTRKGVVDKLPPLRTKHGYVTAR FSATVAVTAKRVTVLCGAPPTTPVATPPAMRPTVSEDTLAAEVLAVLRRPYEFADVRAAV TAKGAKGQNSPATKRMRVEALENEE

  • title: active site
  • coordinates: N225,H246,S257,N392,D465,S482
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.13.068026 SSRSMSLHAL0.995unspLmxM.13.068026 SSRSMSLHAL0.995unspLmxM.13.068026 SSRSMSLHAL0.995unspLmxM.13.0680285 SQRKRSSTGA0.993unspLmxM.13.0680286 SRKRSSTGAT0.995unspLmxM.13.068012 SSRSKSGRPT0.997unspLmxM.13.068024 SKRSRSMSLH0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India