LmxM.13.0870 | mitochondrial processing peptidase alpha subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005739      

  • Curated_GO_Components:  mitochondrion      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.13.0870OTHER0.6781390.0121500.309711
No Results

  • Fasta :-

    >LmxM.13.0870 MFRRVVAPAPVAATAACAGQVRSIYEYKFGQTPLTQPFGGASRLPPGPSSKSASVAAGKV EITKLHNGARVITHNLGGPSVSVGAYILAGPAYDPPNAPGAGAMMHLALTTSNYNNSLFQ LDRNIRSVGAAQSHFEKNKHYIGIRIDARADKWKSAASTSPLSHRRQLQNQKQAEQQFSL NLVQDNIFTCIAAPRFHEPDVERFRDTIDNQVEELRWQCPAEYAKQMLETVAFYREPLGN PRFVPAMSNGAISSSVLLEQYSRYVVPSRVVVAGVNVDHAALIAEYENTPFPHSAAAPHH ARAQPCMVSLKDEAAQYTGGERHDHEDRPKVMGTKPDMDPESIIAVGWLAYGQDRKMIKD HAASMVVGALMDIGFSDCMRCYAPDEMHEHTGLRAFYSPYQTAGLIGFTAKAEPQAAVRM VTDAVKKVQANKASVADSMLSVAKKMAKTQFVVQNVDTIRDYCDYLGTCLSVDSNSTIAT SVEEVVDAINSVSAADVKRVYEMMFSNKTSLYGHGEMLGFPSLRQMGL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/608 Sequence name : 608 Sequence length : 528 VALUES OF COMPUTED PARAMETERS Coef20 : 4.548 CoefTot : -5.036 ChDiff : 1 ZoneTo : 135 KR : 11 DE : 4 CleavSite : 128 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.341 1.418 0.231 0.572 MesoH : -0.055 0.232 -0.290 0.241 MuHd_075 : 35.487 25.542 9.639 9.082 MuHd_095 : 29.523 20.465 8.936 7.504 MuHd_100 : 31.034 23.643 8.992 8.722 MuHd_105 : 36.693 26.230 9.863 9.484 Hmax_075 : 14.600 11.800 2.382 6.120 Hmax_095 : 12.400 17.300 2.768 4.340 Hmax_100 : 12.400 16.400 3.164 5.260 Hmax_105 : 6.650 13.417 0.658 4.877 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6161 0.3839 DFMC : 0.5022 0.4978
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 528 LmxM.13.0870 MFRRVVAPAPVAATAACAGQVRSIYEYKFGQTPLTQPFGGASRLPPGPSSKSASVAAGKVEITKLHNGARVITHNLGGPS 80 VSVGAYILAGPAYDPPNAPGAGAMMHLALTTSNYNNSLFQLDRNIRSVGAAQSHFEKNKHYIGIRIDARADKWKSAASTS 160 PLSHRRQLQNQKQAEQQFSLNLVQDNIFTCIAAPRFHEPDVERFRDTIDNQVEELRWQCPAEYAKQMLETVAFYREPLGN 240 PRFVPAMSNGAISSSVLLEQYSRYVVPSRVVVAGVNVDHAALIAEYENTPFPHSAAAPHHARAQPCMVSLKDEAAQYTGG 320 ERHDHEDRPKVMGTKPDMDPESIIAVGWLAYGQDRKMIKDHAASMVVGALMDIGFSDCMRCYAPDEMHEHTGLRAFYSPY 400 QTAGLIGFTAKAEPQAAVRMVTDAVKKVQANKASVADSMLSVAKKMAKTQFVVQNVDTIRDYCDYLGTCLSVDSNSTIAT 480 SVEEVVDAINSVSAADVKRVYEMMFSNKTSLYGHGEMLGFPSLRQMGL 560 ................................................................................ 80 .............................................P.................................. 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.13.0870 3 ----MFR|RV 0.096 . LmxM.13.0870 4 ---MFRR|VV 0.232 . LmxM.13.0870 22 ACAGQVR|SI 0.148 . LmxM.13.0870 28 RSIYEYK|FG 0.078 . LmxM.13.0870 43 PFGGASR|LP 0.058 . LmxM.13.0870 51 PPGPSSK|SA 0.119 . LmxM.13.0870 59 ASVAAGK|VE 0.065 . LmxM.13.0870 64 GKVEITK|LH 0.062 . LmxM.13.0870 70 KLHNGAR|VI 0.129 . LmxM.13.0870 123 SLFQLDR|NI 0.102 . LmxM.13.0870 126 QLDRNIR|SV 0.700 *ProP* LmxM.13.0870 137 AQSHFEK|NK 0.075 . LmxM.13.0870 139 SHFEKNK|HY 0.079 . LmxM.13.0870 145 KHYIGIR|ID 0.081 . LmxM.13.0870 149 GIRIDAR|AD 0.089 . LmxM.13.0870 152 IDARADK|WK 0.174 . LmxM.13.0870 154 ARADKWK|SA 0.119 . LmxM.13.0870 165 TSPLSHR|RQ 0.094 . LmxM.13.0870 166 SPLSHRR|QL 0.162 . LmxM.13.0870 172 RQLQNQK|QA 0.076 . LmxM.13.0870 195 TCIAAPR|FH 0.110 . LmxM.13.0870 203 HEPDVER|FR 0.114 . LmxM.13.0870 205 PDVERFR|DT 0.125 . LmxM.13.0870 216 NQVEELR|WQ 0.093 . LmxM.13.0870 225 CPAEYAK|QM 0.061 . LmxM.13.0870 235 ETVAFYR|EP 0.072 . LmxM.13.0870 242 EPLGNPR|FV 0.113 . LmxM.13.0870 263 LLEQYSR|YV 0.114 . LmxM.13.0870 269 RYVVPSR|VV 0.113 . LmxM.13.0870 302 AAPHHAR|AQ 0.086 . LmxM.13.0870 311 PCMVSLK|DE 0.074 . LmxM.13.0870 322 QYTGGER|HD 0.071 . LmxM.13.0870 328 RHDHEDR|PK 0.078 . LmxM.13.0870 330 DHEDRPK|VM 0.073 . LmxM.13.0870 335 PKVMGTK|PD 0.064 . LmxM.13.0870 355 LAYGQDR|KM 0.083 . LmxM.13.0870 356 AYGQDRK|MI 0.091 . LmxM.13.0870 359 QDRKMIK|DH 0.078 . LmxM.13.0870 380 GFSDCMR|CY 0.127 . LmxM.13.0870 394 HEHTGLR|AF 0.082 . LmxM.13.0870 411 LIGFTAK|AE 0.070 . LmxM.13.0870 419 EPQAAVR|MV 0.146 . LmxM.13.0870 426 MVTDAVK|KV 0.067 . LmxM.13.0870 427 VTDAVKK|VQ 0.070 . LmxM.13.0870 432 KKVQANK|AS 0.061 . LmxM.13.0870 444 SMLSVAK|KM 0.065 . LmxM.13.0870 445 MLSVAKK|MA 0.251 . LmxM.13.0870 448 VAKKMAK|TQ 0.071 . LmxM.13.0870 460 QNVDTIR|DY 0.145 . LmxM.13.0870 498 VSAADVK|RV 0.076 . LmxM.13.0870 499 SAADVKR|VY 0.232 . LmxM.13.0870 508 EMMFSNK|TS 0.062 . LmxM.13.0870 524 LGFPSLR|QM 0.097 . ____________________________^_________________

  • Fasta :-

    >LmxM.13.0870 ATGTTCCGCCGTGTAGTCGCTCCGGCCCCGGTGGCGGCCACCGCGGCCTGTGCTGGGCAA GTTCGCAGCATCTACGAGTACAAGTTCGGTCAGACCCCCCTGACCCAACCGTTTGGCGGA GCCTCTCGCCTGCCGCCTGGCCCCTCGTCGAAGTCTGCCTCAGTTGCCGCCGGGAAGGTG GAGATCACGAAGCTGCACAACGGCGCGCGCGTCATCACGCACAATCTCGGTGGACCGTCG GTGTCCGTTGGTGCCTACATACTCGCTGGCCCCGCGTACGACCCACCGAACGCGCCGGGT GCGGGAGCCATGATGCACCTTGCCCTGACGACAAGCAACTACAATAATTCTCTGTTCCAG CTTGACCGCAACATCCGCAGCGTCGGCGCCGCCCAGTCGCACTTCGAGAAGAATAAGCAC TACATCGGTATTCGCATCGATGCCCGCGCCGACAAGTGGAAGAGCGCCGCGTCGACGTCA CCGCTTTCACACCGGCGGCAGCTGCAGAACCAGAAGCAAGCGGAGCAGCAGTTCTCGTTG AATCTGGTGCAGGACAACATCTTTACCTGCATCGCCGCGCCACGCTTCCACGAGCCGGAT GTGGAGCGCTTCCGTGACACCATCGACAACCAGGTCGAGGAGCTCCGCTGGCAATGCCCG GCCGAGTACGCGAAGCAGATGCTGGAGACGGTGGCCTTCTACCGTGAGCCGCTCGGCAAC CCCCGCTTCGTGCCGGCGATGAGCAACGGCGCCATTTCGAGCAGCGTGCTGCTGGAGCAG TACAGCCGCTACGTCGTGCCGTCACGCGTCGTCGTCGCCGGCGTCAACGTCGATCACGCC GCGCTGATTGCCGAGTACGAGAACACGCCGTTCCCGCACTCCGCCGCCGCGCCGCACCAC GCCCGCGCGCAGCCGTGCATGGTGAGCTTGAAGGATGAAGCCGCTCAGTACACGGGGGGC GAGCGCCACGACCACGAGGATCGCCCCAAGGTGATGGGCACAAAGCCGGACATGGACCCG GAGTCCATCATCGCCGTCGGCTGGCTCGCGTACGGGCAGGACAGGAAGATGATAAAGGAC CACGCCGCCTCGATGGTCGTCGGGGCGCTGATGGACATTGGATTCAGCGACTGCATGCGC TGCTACGCCCCGGACGAAATGCACGAGCACACGGGCCTGCGCGCCTTCTATAGCCCCTAC CAAACGGCTGGCCTGATCGGCTTCACGGCGAAGGCAGAACCGCAGGCAGCGGTGCGCATG GTGACGGACGCCGTGAAGAAGGTGCAAGCGAACAAGGCCTCTGTCGCGGACTCGATGCTG TCCGTGGCGAAGAAAATGGCGAAAACTCAGTTCGTGGTGCAGAATGTCGACACCATCCGC GACTACTGCGACTACCTCGGCACCTGCCTCTCTGTGGATAGCAACTCGACCATAGCCACA TCGGTCGAAGAGGTTGTCGACGCCATCAACTCTGTCAGCGCGGCGGATGTGAAGAGGGTG TACGAGATGATGTTCTCGAACAAGACCAGCCTGTACGGCCACGGCGAGATGCTCGGCTTC CCTTCCCTGCGCCAGATGGGTCTGTAG
  • Download Fasta

  • Fasta :-

    MFRRVVAPAPVAATAACAGQVRSIYEYKFGQTPLTQPFGGASRLPPGPSSKSASVAAGKV EITKLHNGARVITHNLGGPSVSVGAYILAGPAYDPPNAPGAGAMMHLALTTSNYNNSLFQ LDRNIRSVGAAQSHFEKNKHYIGIRIDARADKWKSAASTSPLSHRRQLQNQKQAEQQFSL NLVQDNIFTCIAAPRFHEPDVERFRDTIDNQVEELRWQCPAEYAKQMLETVAFYREPLGN PRFVPAMSNGAISSSVLLEQYSRYVVPSRVVVAGVNVDHAALIAEYENTPFPHSAAAPHH ARAQPCMVSLKDEAAQYTGGERHDHEDRPKVMGTKPDMDPESIIAVGWLAYGQDRKMIKD HAASMVVGALMDIGFSDCMRCYAPDEMHEHTGLRAFYSPYQTAGLIGFTAKAEPQAAVRM VTDAVKKVQANKASVADSMLSVAKKMAKTQFVVQNVDTIRDYCDYLGTCLSVDSNSTIAT SVEEVVDAINSVSAADVKRVYEMMFSNKTSLYGHGEMLGFPSLRQMGL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.13.0870163 STSPLSHRRQ0.997unspLmxM.13.0870481 STIATSVEEV0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India