LmxM.13.1090 | proteasome regulatory ATPase subunit 2, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.13.1090OTHER0.9999850.0000020.000013
No Results

  • Fasta :-

    >LmxM.13.1090 MGQNMPKAPGAGKPEKWEPPVAPEIGKRKKKRGPDAATRIPKVYPNRACLLRKYRLERCK DYLLLEEEFLRTINAQRDAQSNLEEGAMGHYEAELKRVEDIRGTPLEVATLEEAVDDSHA IVSISGTEYYVPLMSFVDKEQLELGCSVLLHDRQHSIVGVLKDDVDPLVSVMKVDKAPED TYADIGGLEQQIQEIKEAVEFPLSHPELYDEIGIKPPKGVILYGVPGTGKTLLAKAVANR TSATFLRVVGSELIQKYSGEGPKLVRELFRVAEEHSPAIVFIDEIDAIGTKRYDTDSSGT KEVQRTMLELLTQLDGFDSSNDVKVIMATNRIDTLDPALIRPGRIDRKIEFPFPDEKTKR RIFEIHTSRMSLAEDVDISEFIHAKDEMSGADVKAICTEAGLLALRERRMKVCQADFIKG KENVQYRKDKSTFSRFYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/678 Sequence name : 678 Sequence length : 438 VALUES OF COMPUTED PARAMETERS Coef20 : 2.118 CoefTot : -1.742 ChDiff : -9 ZoneTo : 14 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.065 1.112 0.079 0.519 MesoH : -0.938 0.256 -0.447 0.175 MuHd_075 : 16.154 9.780 5.367 2.793 MuHd_095 : 19.948 9.181 3.711 2.967 MuHd_100 : 14.892 10.323 3.978 2.119 MuHd_105 : 10.597 11.212 4.256 3.022 Hmax_075 : 1.167 0.117 -2.560 2.053 Hmax_095 : 1.312 -3.800 -3.658 1.566 Hmax_100 : 1.400 0.000 -2.588 1.480 Hmax_105 : 2.000 -0.300 -2.034 2.240 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9776 0.0224 DFMC : 0.9647 0.0353
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 438 LmxM.13.1090 MGQNMPKAPGAGKPEKWEPPVAPEIGKRKKKRGPDAATRIPKVYPNRACLLRKYRLERCKDYLLLEEEFLRTINAQRDAQ 80 SNLEEGAMGHYEAELKRVEDIRGTPLEVATLEEAVDDSHAIVSISGTEYYVPLMSFVDKEQLELGCSVLLHDRQHSIVGV 160 LKDDVDPLVSVMKVDKAPEDTYADIGGLEQQIQEIKEAVEFPLSHPELYDEIGIKPPKGVILYGVPGTGKTLLAKAVANR 240 TSATFLRVVGSELIQKYSGEGPKLVRELFRVAEEHSPAIVFIDEIDAIGTKRYDTDSSGTKEVQRTMLELLTQLDGFDSS 320 NDVKVIMATNRIDTLDPALIRPGRIDRKIEFPFPDEKTKRRIFEIHTSRMSLAEDVDISEFIHAKDEMSGADVKAICTEA 400 GLLALRERRMKVCQADFIKGKENVQYRKDKSTFSRFYL 480 ...............................P................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.13.1090 7 MGQNMPK|AP 0.083 . LmxM.13.1090 13 KAPGAGK|PE 0.059 . LmxM.13.1090 16 GAGKPEK|WE 0.071 . LmxM.13.1090 27 VAPEIGK|RK 0.058 . LmxM.13.1090 28 APEIGKR|KK 0.173 . LmxM.13.1090 29 PEIGKRK|KK 0.076 . LmxM.13.1090 30 EIGKRKK|KR 0.110 . LmxM.13.1090 31 IGKRKKK|RG 0.277 . LmxM.13.1090 32 GKRKKKR|GP 0.509 *ProP* LmxM.13.1090 39 GPDAATR|IP 0.074 . LmxM.13.1090 42 AATRIPK|VY 0.086 . LmxM.13.1090 47 PKVYPNR|AC 0.068 . LmxM.13.1090 52 NRACLLR|KY 0.085 . LmxM.13.1090 53 RACLLRK|YR 0.073 . LmxM.13.1090 55 CLLRKYR|LE 0.151 . LmxM.13.1090 58 RKYRLER|CK 0.265 . LmxM.13.1090 60 YRLERCK|DY 0.069 . LmxM.13.1090 71 LEEEFLR|TI 0.095 . LmxM.13.1090 77 RTINAQR|DA 0.118 . LmxM.13.1090 96 HYEAELK|RV 0.091 . LmxM.13.1090 97 YEAELKR|VE 0.133 . LmxM.13.1090 102 KRVEDIR|GT 0.111 . LmxM.13.1090 139 LMSFVDK|EQ 0.071 . LmxM.13.1090 153 SVLLHDR|QH 0.085 . LmxM.13.1090 162 SIVGVLK|DD 0.069 . LmxM.13.1090 173 PLVSVMK|VD 0.065 . LmxM.13.1090 176 SVMKVDK|AP 0.068 . LmxM.13.1090 196 QQIQEIK|EA 0.060 . LmxM.13.1090 215 YDEIGIK|PP 0.060 . LmxM.13.1090 218 IGIKPPK|GV 0.081 . LmxM.13.1090 230 GVPGTGK|TL 0.056 . LmxM.13.1090 235 GKTLLAK|AV 0.072 . LmxM.13.1090 240 AKAVANR|TS 0.097 . LmxM.13.1090 247 TSATFLR|VV 0.211 . LmxM.13.1090 256 GSELIQK|YS 0.079 . LmxM.13.1090 263 YSGEGPK|LV 0.072 . LmxM.13.1090 266 EGPKLVR|EL 0.079 . LmxM.13.1090 270 LVRELFR|VA 0.118 . LmxM.13.1090 291 IDAIGTK|RY 0.059 . LmxM.13.1090 292 DAIGTKR|YD 0.195 . LmxM.13.1090 301 TDSSGTK|EV 0.078 . LmxM.13.1090 305 GTKEVQR|TM 0.086 . LmxM.13.1090 324 DSSNDVK|VI 0.068 . LmxM.13.1090 331 VIMATNR|ID 0.074 . LmxM.13.1090 341 LDPALIR|PG 0.073 . LmxM.13.1090 344 ALIRPGR|ID 0.308 . LmxM.13.1090 347 RPGRIDR|KI 0.307 . LmxM.13.1090 348 PGRIDRK|IE 0.076 . LmxM.13.1090 357 FPFPDEK|TK 0.060 . LmxM.13.1090 359 FPDEKTK|RR 0.066 . LmxM.13.1090 360 PDEKTKR|RI 0.229 . LmxM.13.1090 361 DEKTKRR|IF 0.164 . LmxM.13.1090 369 FEIHTSR|MS 0.082 . LmxM.13.1090 385 SEFIHAK|DE 0.079 . LmxM.13.1090 394 MSGADVK|AI 0.072 . LmxM.13.1090 406 AGLLALR|ER 0.065 . LmxM.13.1090 408 LLALRER|RM 0.084 . LmxM.13.1090 409 LALRERR|MK 0.349 . LmxM.13.1090 411 LRERRMK|VC 0.112 . LmxM.13.1090 419 CQADFIK|GK 0.076 . LmxM.13.1090 421 ADFIKGK|EN 0.070 . LmxM.13.1090 427 KENVQYR|KD 0.094 . LmxM.13.1090 428 ENVQYRK|DK 0.094 . LmxM.13.1090 430 VQYRKDK|ST 0.217 . LmxM.13.1090 435 DKSTFSR|FY 0.127 . ____________________________^_________________

  • Fasta :-

    >LmxM.13.1090 ATGGGGCAGAACATGCCAAAGGCGCCTGGCGCCGGCAAACCGGAGAAGTGGGAGCCTCCT GTGGCACCGGAGATCGGCAAGCGAAAGAAGAAGCGCGGCCCCGACGCGGCCACGCGCATT CCGAAGGTCTACCCGAACCGCGCCTGCCTCCTCCGAAAGTACCGCCTTGAGCGCTGCAAG GATTACCTCCTGCTAGAGGAGGAGTTCCTGCGCACGATCAACGCCCAGCGCGACGCGCAG TCAAACCTGGAGGAGGGAGCGATGGGCCACTACGAGGCGGAGCTGAAGCGCGTCGAGGAC ATCCGCGGCACCCCGCTGGAGGTGGCGACGCTCGAGGAGGCAGTGGACGACTCGCACGCG ATTGTATCCATCTCTGGCACCGAGTACTACGTGCCCCTCATGTCGTTCGTAGACAAGGAG CAGTTAGAGCTGGGATGCAGCGTGCTGTTGCATGACCGGCAGCACAGCATCGTTGGCGTG CTCAAGGACGACGTCGACCCGCTGGTGAGTGTCATGAAGGTGGACAAGGCGCCGGAGGAC ACGTACGCGGACATTGGTGGCCTGGAGCAGCAGATCCAGGAGATCAAGGAGGCGGTCGAG TTTCCGCTCTCCCACCCAGAGCTGTACGACGAGATAGGCATCAAGCCACCGAAGGGTGTC ATTCTCTACGGTGTCCCCGGCACCGGCAAGACGCTCCTGGCCAAAGCCGTCGCGAACCGC ACGAGCGCCACGTTCCTGCGGGTGGTGGGATCGGAGCTGATTCAGAAGTACTCCGGCGAG GGCCCCAAGCTCGTGCGTGAGCTCTTCCGGGTTGCGGAGGAGCACTCGCCGGCGATTGTT TTCATTGACGAGATCGACGCCATCGGCACGAAGCGCTACGACACGGACAGCAGCGGCACC AAGGAGGTGCAGCGTACGATGCTGGAGCTGCTTACTCAACTGGATGGCTTCGATAGCAGC AACGACGTGAAGGTGATCATGGCAACAAACCGCATCGACACCCTCGACCCGGCTCTCATC CGCCCCGGCCGCATCGACCGCAAGATCGAGTTCCCTTTCCCAGACGAGAAGACGAAGCGC CGCATCTTCGAAATCCATACAAGCCGCATGTCGCTCGCCGAAGACGTCGACATCTCCGAG TTCATCCATGCGAAGGATGAGATGAGCGGCGCGGATGTGAAGGCAATCTGCACAGAGGCC GGGCTGCTGGCCCTGCGTGAGCGCCGCATGAAGGTGTGCCAAGCCGACTTTATCAAGGGC AAGGAAAATGTGCAGTACCGCAAGGACAAGTCGACGTTTTCGCGCTTCTACTTGTAA
  • Download Fasta

  • Fasta :-

    MGQNMPKAPGAGKPEKWEPPVAPEIGKRKKKRGPDAATRIPKVYPNRACLLRKYRLERCK DYLLLEEEFLRTINAQRDAQSNLEEGAMGHYEAELKRVEDIRGTPLEVATLEEAVDDSHA IVSISGTEYYVPLMSFVDKEQLELGCSVLLHDRQHSIVGVLKDDVDPLVSVMKVDKAPED TYADIGGLEQQIQEIKEAVEFPLSHPELYDEIGIKPPKGVILYGVPGTGKTLLAKAVANR TSATFLRVVGSELIQKYSGEGPKLVRELFRVAEEHSPAIVFIDEIDAIGTKRYDTDSSGT KEVQRTMLELLTQLDGFDSSNDVKVIMATNRIDTLDPALIRPGRIDRKIEFPFPDEKTKR RIFEIHTSRMSLAEDVDISEFIHAKDEMSGADVKAICTEAGLLALRERRMKVCQADFIKG KENVQYRKDKSTFSRFYL

  • title: ATP binding site
  • coordinates: V225,P226,G227,T228,G229,K230,T231,L232,D283,N330
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.13.1090182 YPEDTYADIG0.993unspLmxM.13.1090371 STSRMSLAED0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India