LmxM.14.0310 | proteasome alpha 3 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.14.0310OTHER0.9998730.0000600.000067
No Results

  • Fasta :-

    >LmxM.14.0310 MSHRYDSRTTTFSPEGRLYQVEYAVEAIQQAGTVIGVCTKDGVVLAGEKMVPHPLFDNEN MQDKNTSGEKMYKIAEHIGCSVAGVTSDAYALLNYARLSALRHQYTFQEPMAIEDLCRIL CDEKQLYTQYGGVRPYGVSFLLIGWDRYYGYQLYSTEPSGDYSAWSAYAIGQNDQVAHSL LKKDWHENMTLEDGMLLALRVLGKTMDTAKIDLARVEVAVMRKVPASNVDQLLDPFKHHP KTTPQFQILALSELKPHAERADQAREAEEQAEAERQRQQEQALES
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/269 Sequence name : 269 Sequence length : 285 VALUES OF COMPUTED PARAMETERS Coef20 : 3.893 CoefTot : -0.149 ChDiff : -11 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.718 1.224 0.117 0.462 MesoH : -0.882 0.116 -0.381 0.148 MuHd_075 : 14.344 3.037 3.055 4.089 MuHd_095 : 8.799 2.372 2.441 1.127 MuHd_100 : 10.958 6.185 3.112 2.333 MuHd_105 : 14.859 8.363 3.444 4.238 Hmax_075 : -3.850 -5.250 -3.650 0.210 Hmax_095 : -2.187 -3.325 -2.391 -0.200 Hmax_100 : 9.800 0.700 0.016 2.170 Hmax_105 : -2.450 -3.967 -2.377 1.132 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9804 0.0196 DFMC : 0.9624 0.0376
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 285 LmxM.14.0310 MSHRYDSRTTTFSPEGRLYQVEYAVEAIQQAGTVIGVCTKDGVVLAGEKMVPHPLFDNENMQDKNTSGEKMYKIAEHIGC 80 SVAGVTSDAYALLNYARLSALRHQYTFQEPMAIEDLCRILCDEKQLYTQYGGVRPYGVSFLLIGWDRYYGYQLYSTEPSG 160 DYSAWSAYAIGQNDQVAHSLLKKDWHENMTLEDGMLLALRVLGKTMDTAKIDLARVEVAVMRKVPASNVDQLLDPFKHHP 240 KTTPQFQILALSELKPHAERADQAREAEEQAEAERQRQQEQALES 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.14.0310 4 ---MSHR|YD 0.101 . LmxM.14.0310 8 SHRYDSR|TT 0.093 . LmxM.14.0310 17 TFSPEGR|LY 0.099 . LmxM.14.0310 40 VIGVCTK|DG 0.060 . LmxM.14.0310 49 VVLAGEK|MV 0.058 . LmxM.14.0310 64 NENMQDK|NT 0.076 . LmxM.14.0310 70 KNTSGEK|MY 0.067 . LmxM.14.0310 73 SGEKMYK|IA 0.089 . LmxM.14.0310 97 ALLNYAR|LS 0.068 . LmxM.14.0310 102 ARLSALR|HQ 0.080 . LmxM.14.0310 118 AIEDLCR|IL 0.086 . LmxM.14.0310 124 RILCDEK|QL 0.063 . LmxM.14.0310 134 TQYGGVR|PY 0.103 . LmxM.14.0310 147 LLIGWDR|YY 0.123 . LmxM.14.0310 182 VAHSLLK|KD 0.062 . LmxM.14.0310 183 AHSLLKK|DW 0.174 . LmxM.14.0310 200 GMLLALR|VL 0.093 . LmxM.14.0310 204 ALRVLGK|TM 0.071 . LmxM.14.0310 210 KTMDTAK|ID 0.060 . LmxM.14.0310 215 AKIDLAR|VE 0.086 . LmxM.14.0310 222 VEVAVMR|KV 0.117 . LmxM.14.0310 223 EVAVMRK|VP 0.072 . LmxM.14.0310 237 QLLDPFK|HH 0.064 . LmxM.14.0310 241 PFKHHPK|TT 0.065 . LmxM.14.0310 255 LALSELK|PH 0.053 . LmxM.14.0310 260 LKPHAER|AD 0.086 . LmxM.14.0310 265 ERADQAR|EA 0.262 . LmxM.14.0310 275 EQAEAER|QR 0.084 . LmxM.14.0310 277 AEAERQR|QQ 0.143 . ____________________________^_________________

  • Fasta :-

    >LmxM.14.0310 ATGTCTCACCGGTACGACTCCCGCACCACCACCTTCTCCCCTGAAGGCCGCCTCTACCAG GTGGAGTACGCCGTGGAGGCGATTCAGCAGGCCGGCACCGTCATCGGCGTGTGCACGAAG GACGGCGTCGTGCTGGCGGGTGAGAAGATGGTGCCACACCCGCTCTTTGATAATGAAAAT ATGCAGGACAAGAACACCAGCGGGGAGAAGATGTACAAGATCGCCGAGCACATCGGTTGC AGCGTGGCGGGCGTGACGTCGGATGCGTACGCCTTACTGAACTACGCTCGGCTTTCGGCA CTGCGCCACCAGTACACCTTCCAGGAGCCGATGGCGATCGAGGATCTCTGCCGCATCCTG TGTGACGAGAAGCAGCTCTACACGCAGTACGGCGGTGTGCGCCCCTACGGTGTGTCCTTC CTGCTCATCGGGTGGGACCGCTACTATGGTTATCAGCTCTACTCCACGGAGCCAAGCGGT GACTACAGCGCATGGAGTGCGTACGCGATCGGCCAGAACGATCAAGTGGCGCACTCACTC TTGAAGAAGGACTGGCACGAGAACATGACGCTAGAGGATGGCATGCTGCTGGCACTGCGG GTGCTGGGCAAGACGATGGACACGGCAAAGATCGACCTCGCCCGGGTGGAGGTGGCGGTG ATGCGCAAGGTGCCCGCTTCGAACGTTGATCAGCTGCTCGACCCGTTCAAGCATCACCCC AAGACGACGCCTCAGTTTCAGATTCTCGCCCTTAGTGAACTGAAGCCGCACGCCGAACGC GCTGACCAGGCCAGGGAGGCGGAGGAGCAGGCCGAGGCGGAGCGCCAGCGCCAGCAGGAG CAGGCTCTGGAGTCGTAA
  • Download Fasta

  • Fasta :-

    MSHRYDSRTTTFSPEGRLYQVEYAVEAIQQAGTVIGVCTKDGVVLAGEKMVPHPLFDNEN MQDKNTSGEKMYKIAEHIGCSVAGVTSDAYALLNYARLSALRHQYTFQEPMAIEDLCRIL CDEKQLYTQYGGVRPYGVSFLLIGWDRYYGYQLYSTEPSGDYSAWSAYAIGQNDQVAHSL LKKDWHENMTLEDGMLLALRVLGKTMDTAKIDLARVEVAVMRKVPASNVDQLLDPFKHHP KTTPQFQILALSELKPHAERADQAREAEEQAEAERQRQQEQALES

  • title: active site
  • coordinates: G32,E48,M50,K70
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.14.0310227 SKVPASNVDQ0.995unspLmxM.14.0310227 SKVPASNVDQ0.995unspLmxM.14.0310227 SKVPASNVDQ0.995unspLmxM.14.03107 SHRYDSRTTT0.994unspLmxM.14.031013 STTTFSPEGR0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India