LmxM.15.0090 | ATP-dependent protease ATPase subunit HslU1, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.15.0090OTHER0.9990020.0000320.000966
No Results

  • Fasta :-

    >LmxM.15.0090 MRPRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGK TEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEA KLKAEDRILKSLAGVSDGFREHLRSGALDDIEVMVELQEKKEKPKTASGEGVFISLDIPS MMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGIVVIDEIDKIV TAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVRTDKILFICSGAFHSVKPSDMLA ELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLIFEDDALWEIASIA AYINSTVQNIGARRLITITEKVVEEISFEGPERRSEKFVIDAAYVKKAVDKMVKKVDIKK FIL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/63 Sequence name : 63 Sequence length : 423 VALUES OF COMPUTED PARAMETERS Coef20 : 3.710 CoefTot : 0.017 ChDiff : -4 ZoneTo : 4 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.653 1.053 -0.039 0.470 MesoH : -0.794 0.246 -0.438 0.182 MuHd_075 : 25.388 23.152 7.554 7.665 MuHd_095 : 33.649 19.603 8.931 6.904 MuHd_100 : 34.686 16.598 8.461 6.733 MuHd_105 : 35.647 14.125 8.282 6.735 Hmax_075 : 7.583 17.150 0.737 5.367 Hmax_095 : 5.163 10.763 0.176 3.833 Hmax_100 : 8.400 8.100 -0.031 3.770 Hmax_105 : 7.100 7.600 -0.298 3.770 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3141 0.6859 DFMC : 0.5265 0.4735
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 423 LmxM.15.0090 MRPRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGKTEIARRLAKLVDAPFVKVEA 80 TKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEAKLKAEDRILKSLAGVSDGFREHLRSGALDDIEVMVELQEK 160 KEKPKTASGEGVFISLDIPSMMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGIVVIDEIDKIV 240 TAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVRTDKILFICSGAFHSVKPSDMLAELQGRLPIRVELQQLSKEDF 320 HRIITEPRFNLIAQHKAMMATEGVDLIFEDDALWEIASIAAYINSTVQNIGARRLITITEKVVEEISFEGPERRSEKFVI 400 DAAYVKKAVDKMVKKVDIKKFIL 480 .................................P.............................................. 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ....................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.15.0090 2 -----MR|PR 0.077 . LmxM.15.0090 4 ---MRPR|EL 0.118 . LmxM.15.0090 8 RPRELMK|EL 0.087 . LmxM.15.0090 12 LMKELDR|YI 0.085 . LmxM.15.0090 21 VGQSEAK|KA 0.064 . LmxM.15.0090 22 GQSEAKK|AV 0.257 . LmxM.15.0090 29 AVSVALR|NR 0.077 . LmxM.15.0090 31 SVALRNR|WR 0.101 . LmxM.15.0090 33 ALRNRWR|RH 0.071 . LmxM.15.0090 34 LRNRWRR|HQ 0.595 *ProP* LmxM.15.0090 42 QVPSDIR|EE 0.064 . LmxM.15.0090 48 REEIAPK|NI 0.070 . LmxM.15.0090 60 GPTGVGK|TE 0.060 . LmxM.15.0090 65 GKTEIAR|RL 0.082 . LmxM.15.0090 66 KTEIARR|LA 0.120 . LmxM.15.0090 69 IARRLAK|LV 0.241 . LmxM.15.0090 77 VDAPFVK|VE 0.061 . LmxM.15.0090 82 VKVEATK|FT 0.093 . LmxM.15.0090 91 EVGFHGR|DV 0.215 . LmxM.15.0090 102 IIEDLYK|AS 0.064 . LmxM.15.0090 109 ASLSQTK|QN 0.067 . LmxM.15.0090 113 QTKQNIR|RQ 0.079 . LmxM.15.0090 114 TKQNIRR|QH 0.174 . LmxM.15.0090 121 QHEEEAK|LK 0.058 . LmxM.15.0090 123 EEEAKLK|AE 0.075 . LmxM.15.0090 127 KLKAEDR|IL 0.083 . LmxM.15.0090 130 AEDRILK|SL 0.167 . LmxM.15.0090 140 GVSDGFR|EH 0.076 . LmxM.15.0090 144 GFREHLR|SG 0.092 . LmxM.15.0090 160 MVELQEK|KE 0.058 . LmxM.15.0090 161 VELQEKK|EK 0.073 . LmxM.15.0090 163 LQEKKEK|PK 0.078 . LmxM.15.0090 165 EKKEKPK|TA 0.092 . LmxM.15.0090 186 SMMGGQR|QQ 0.089 . LmxM.15.0090 191 QRQQTVK|KV 0.107 . LmxM.15.0090 192 RQQTVKK|VM 0.092 . LmxM.15.0090 195 TVKKVMK|IK 0.073 . LmxM.15.0090 197 KKVMKIK|DA 0.120 . LmxM.15.0090 210 LQEELDK|MM 0.069 . LmxM.15.0090 223 VTAEALR|AC 0.087 . LmxM.15.0090 238 VIDEIDK|IV 0.070 . LmxM.15.0090 247 TAAGGYK|GH 0.070 . LmxM.15.0090 272 GTTVSTK|FN 0.072 . LmxM.15.0090 278 KFNVQVR|TD 0.091 . LmxM.15.0090 281 VQVRTDK|IL 0.108 . LmxM.15.0090 294 GAFHSVK|PS 0.065 . LmxM.15.0090 305 LAELQGR|LP 0.086 . LmxM.15.0090 309 QGRLPIR|VE 0.089 . LmxM.15.0090 317 ELQQLSK|ED 0.060 . LmxM.15.0090 322 SKEDFHR|II 0.112 . LmxM.15.0090 328 RIITEPR|FN 0.101 . LmxM.15.0090 336 NLIAQHK|AM 0.072 . LmxM.15.0090 373 VQNIGAR|RL 0.093 . LmxM.15.0090 374 QNIGARR|LI 0.139 . LmxM.15.0090 381 LITITEK|VV 0.068 . LmxM.15.0090 393 SFEGPER|RS 0.085 . LmxM.15.0090 394 FEGPERR|SE 0.206 . LmxM.15.0090 397 PERRSEK|FV 0.322 . LmxM.15.0090 406 IDAAYVK|KA 0.064 . LmxM.15.0090 407 DAAYVKK|AV 0.211 . LmxM.15.0090 411 VKKAVDK|MV 0.088 . LmxM.15.0090 414 AVDKMVK|KV 0.073 . LmxM.15.0090 415 VDKMVKK|VD 0.091 . LmxM.15.0090 419 VKKVDIK|KF 0.060 . LmxM.15.0090 420 KKVDIKK|FI 0.108 . ____________________________^_________________

  • Fasta :-

    >LmxM.15.0090 ATGCGTCCACGCGAGTTGATGAAGGAGCTGGACCGCTACATTGTGGGCCAGAGCGAGGCT AAGAAGGCTGTGTCAGTGGCGCTGCGCAATCGGTGGCGCCGCCACCAGGTGCCGAGCGAC ATACGCGAGGAGATCGCGCCAAAAAATATTCTGATGATTGGCCCGACCGGCGTGGGCAAG ACGGAGATTGCCCGCCGCCTCGCCAAGCTCGTAGATGCTCCGTTCGTCAAGGTGGAGGCC ACCAAGTTCACAGAGGTCGGCTTCCACGGCCGCGACGTGGAGAGCATCATCGAGGACCTC TATAAGGCCTCCTTGTCGCAGACAAAGCAGAACATCCGTCGCCAGCATGAGGAGGAGGCG AAGTTGAAGGCGGAGGACCGCATTCTTAAGTCCTTGGCCGGTGTGTCGGACGGCTTCCGC GAGCACCTGCGCAGCGGGGCATTGGACGACATCGAGGTCATGGTTGAGCTTCAAGAGAAG AAAGAGAAACCCAAGACAGCGAGCGGCGAGGGTGTCTTCATCTCTCTCGACATCCCTTCC ATGATGGGCGGGCAGCGCCAGCAGACTGTGAAGAAGGTGATGAAGATCAAGGACGCTTTC CCGGCTGTGCTGCAGGAAGAGCTGGACAAGATGATGGACACCGAGGACGTCACGGCGGAG GCGCTGCGCGCCTGCGAGGAGGACGGCATCGTTGTCATCGACGAGATCGACAAGATCGTG ACGGCGGCGGGCGGGTACAAGGGTCACCAAGCCTCTGCCGAGGGCGTCCAGCAGGATCTG CTACCGTTGGTAGAGGGCACCACGGTGTCGACGAAGTTTAATGTGCAGGTGAGGACGGAC AAGATTTTGTTTATCTGCAGCGGCGCCTTCCACAGCGTTAAGCCGTCCGACATGCTGGCG GAGCTGCAGGGCCGTCTGCCCATCCGCGTCGAGCTCCAGCAACTGAGTAAGGAGGACTTT CACCGCATCATCACCGAGCCCCGTTTCAACCTCATTGCGCAACACAAGGCTATGATGGCT ACCGAGGGCGTCGACCTCATCTTTGAAGACGACGCGCTCTGGGAGATTGCTAGCATCGCC GCCTACATCAACTCGACAGTGCAGAACATCGGCGCGCGCCGCCTCATCACGATCACGGAG AAGGTTGTTGAGGAGATCAGCTTCGAGGGGCCGGAGCGGAGGAGCGAGAAGTTCGTCATT GACGCCGCGTACGTCAAGAAGGCTGTGGACAAGATGGTCAAGAAGGTGGACATCAAGAAG TTCATCTTGTGA
  • Download Fasta

  • Fasta :-

    MRPRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGK TEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEA KLKAEDRILKSLAGVSDGFREHLRSGALDDIEVMVELQEKKEKPKTASGEGVFISLDIPS MMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGIVVIDEIDKIV TAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVRTDKILFICSGAFHSVKPSDMLA ELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLIFEDDALWEIASIA AYINSTVQNIGARRLITITEKVVEEISFEGPERRSEKFVIDAAYVKKAVDKMVKKVDIKK FIL

  • title: ATP binding site
  • coordinates: P55,T56,G57,V58,G59,K60,T61,E62
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.15.0090316 SLQQLSKEDF0.994unspLmxM.15.0090395 SPERRSEKFV0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India