LmxM.15.0580 | signal peptidase subunit, putative

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  • Fasta :-

    >LmxM.15.0580 MHSMRQRSCDIVASTVSALLVTAVLTASSTILRDLVLRPRPLASDVRVSSLSPLYHVRSP TLLSPEIPDAAIYYRPGTGSDGRRSAEKMLPPNIKIVDTVDRPEDSEEDRQRKTWQRQRL PKGFELGVRTIDRVALYLSGSVDFSPCWDWNTKAIYISFIARFPSTSASQNDVVLLDAVL RPVSLPAKLARLAKLRRQERSAALPGSGNGRATVAARASPAATQMLTDEERQQLAAFEQT LRNVDHDHPSVYIDHIDKRIVLNDSFKYFVDAFDDTSLGGNTVEVVLRYQVMSYSGWAPV REDVLGHQVKVKMPENAVLWKAHQR
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/637 Sequence name : 637 Sequence length : 325 VALUES OF COMPUTED PARAMETERS Coef20 : 4.827 CoefTot : 1.497 ChDiff : 6 ZoneTo : 33 KR : 3 DE : 1 CleavSite : 43 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.947 2.129 0.371 0.651 MesoH : -0.458 0.481 -0.230 0.172 MuHd_075 : 20.621 11.200 5.808 3.839 MuHd_095 : 24.948 20.700 7.645 6.567 MuHd_100 : 26.411 17.608 7.382 5.606 MuHd_105 : 25.259 13.154 6.594 4.605 Hmax_075 : 12.600 23.100 2.861 5.017 Hmax_095 : 15.137 21.087 4.740 7.040 Hmax_100 : 16.000 22.100 5.028 5.930 Hmax_105 : 14.000 16.275 3.972 4.445 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8823 0.1177 DFMC : 0.7747 0.2253
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 325 LmxM.15.0580 MHSMRQRSCDIVASTVSALLVTAVLTASSTILRDLVLRPRPLASDVRVSSLSPLYHVRSPTLLSPEIPDAAIYYRPGTGS 80 DGRRSAEKMLPPNIKIVDTVDRPEDSEEDRQRKTWQRQRLPKGFELGVRTIDRVALYLSGSVDFSPCWDWNTKAIYISFI 160 ARFPSTSASQNDVVLLDAVLRPVSLPAKLARLAKLRRQERSAALPGSGNGRATVAARASPAATQMLTDEERQQLAAFEQT 240 LRNVDHDHPSVYIDHIDKRIVLNDSFKYFVDAFDDTSLGGNTVEVVLRYQVMSYSGWAPVREDVLGHQVKVKMPENAVLW 320 KAHQR 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ..... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.15.0580 5 --MHSMR|QR 0.104 . LmxM.15.0580 7 MHSMRQR|SC 0.264 . LmxM.15.0580 33 ASSTILR|DL 0.087 . LmxM.15.0580 38 LRDLVLR|PR 0.069 . LmxM.15.0580 40 DLVLRPR|PL 0.075 . LmxM.15.0580 47 PLASDVR|VS 0.075 . LmxM.15.0580 58 SPLYHVR|SP 0.104 . LmxM.15.0580 75 DAAIYYR|PG 0.084 . LmxM.15.0580 83 GTGSDGR|RS 0.075 . LmxM.15.0580 84 TGSDGRR|SA 0.494 . LmxM.15.0580 88 GRRSAEK|ML 0.084 . LmxM.15.0580 95 MLPPNIK|IV 0.091 . LmxM.15.0580 102 IVDTVDR|PE 0.091 . LmxM.15.0580 110 EDSEEDR|QR 0.101 . LmxM.15.0580 112 SEEDRQR|KT 0.112 . LmxM.15.0580 113 EEDRQRK|TW 0.207 . LmxM.15.0580 117 QRKTWQR|QR 0.102 . LmxM.15.0580 119 KTWQRQR|LP 0.077 . LmxM.15.0580 122 QRQRLPK|GF 0.280 . LmxM.15.0580 129 GFELGVR|TI 0.084 . LmxM.15.0580 133 GVRTIDR|VA 0.081 . LmxM.15.0580 153 CWDWNTK|AI 0.066 . LmxM.15.0580 162 YISFIAR|FP 0.143 . LmxM.15.0580 181 LLDAVLR|PV 0.089 . LmxM.15.0580 188 PVSLPAK|LA 0.066 . LmxM.15.0580 191 LPAKLAR|LA 0.111 . LmxM.15.0580 194 KLARLAK|LR 0.158 . LmxM.15.0580 196 ARLAKLR|RQ 0.087 . LmxM.15.0580 197 RLAKLRR|QE 0.116 . LmxM.15.0580 200 KLRRQER|SA 0.410 . LmxM.15.0580 211 PGSGNGR|AT 0.122 . LmxM.15.0580 217 RATVAAR|AS 0.113 . LmxM.15.0580 231 MLTDEER|QQ 0.088 . LmxM.15.0580 242 AFEQTLR|NV 0.097 . LmxM.15.0580 258 YIDHIDK|RI 0.052 . LmxM.15.0580 259 IDHIDKR|IV 0.182 . LmxM.15.0580 267 VLNDSFK|YF 0.081 . LmxM.15.0580 288 TVEVVLR|YQ 0.086 . LmxM.15.0580 301 SGWAPVR|ED 0.078 . LmxM.15.0580 310 VLGHQVK|VK 0.067 . LmxM.15.0580 312 GHQVKVK|MP 0.083 . LmxM.15.0580 321 ENAVLWK|AH 0.068 . LmxM.15.0580 325 LWKAHQR|-- 0.105 . ____________________________^_________________

  • Fasta :-

    >LmxM.15.0580 ATGCACTCGATGCGACAGCGCTCCTGCGACATCGTTGCCTCGACCGTGTCGGCCCTACTC GTCACGGCAGTCCTAACGGCCAGCTCGACGATTTTGCGAGACCTGGTGCTGCGCCCGCGT CCGCTCGCCTCGGACGTGCGTGTGTCGAGCCTCTCGCCGCTGTACCACGTGCGCAGCCCT ACGCTGCTGTCTCCAGAGATCCCGGATGCGGCCATCTACTACCGCCCCGGCACCGGCAGC GATGGCCGCAGAAGCGCGGAAAAAATGCTCCCGCCGAATATTAAGATCGTGGACACGGTG GATCGTCCTGAGGACAGCGAGGAAGATCGCCAGCGCAAGACATGGCAGCGGCAGCGCTTA CCGAAAGGCTTCGAGCTCGGCGTACGCACCATCGATCGCGTCGCGCTGTACCTCTCTGGC TCGGTGGACTTCTCCCCCTGTTGGGACTGGAACACGAAAGCTATCTACATCTCCTTCATT GCCCGCTTTCCGTCGACGTCGGCATCTCAGAATGACGTCGTCCTGCTCGATGCGGTGCTG CGCCCGGTGTCACTGCCAGCGAAGCTCGCGCGGTTGGCGAAGTTGCGTCGCCAAGAGCGG AGCGCGGCGCTACCGGGAAGCGGCAACGGGAGAGCGACGGTGGCGGCCAGGGCCTCTCCC GCCGCCACGCAGATGTTGACGGACGAAGAGCGGCAGCAGCTCGCTGCCTTCGAGCAGACT CTGCGCAATGTCGATCACGATCACCCCTCCGTGTACATTGACCACATCGACAAGCGGATC GTGCTGAACGACTCATTCAAGTACTTTGTGGACGCCTTTGACGACACCTCTCTCGGCGGC AACACGGTTGAGGTGGTACTGCGCTACCAGGTGATGAGCTACTCCGGCTGGGCGCCCGTG CGGGAGGATGTGCTTGGGCACCAGGTGAAAGTAAAGATGCCAGAGAACGCTGTGCTGTGG AAGGCGCATCAGCGGTGA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.15.058085 SDGRRSAEKM0.995unspLmxM.15.0580106 SRPEDSEEDR0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India