LmxM.17.1290 | eukaryotic translation initiation factor 3 subunit b

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      GO:0005852      

  • Curated_GO_Components:  cytoplasm      eukaryotic translation initiation factor 3 complex      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.17.1290OTHER0.9999430.0000410.000016
No Results

  • Fasta :-

    >LmxM.17.1290 MTDVNFGRHILIDGLPNNVTPDKRDLFQRHFSRRIGELLGGEKFSLHLLTDPETALLSGA ILSCVTETQAEAALAKLNRFPFTKSAVLTTYRWSSLEEARVDDGPYVPPAMADDDDEEEA ELVHNMAEDPDARPQFLIKSGVSFDCDWYWFNWEKNEPDLYRRRKISKDDPLCRWSEVDR DNKKLHSGLVCSALPVSRPLPVWSTYGSMVISQHEKGLRVWAGRSMRLHFEITMDINAFM VSPCEKYIIVQTPKDIGIINLRTAKKIRTIGNLDLHSDDLWPIMRFSADDSLVVVCKTGY RPMDSAEVPEGHLNIYVSETMKLLKGRGSSGHSFAIPGLYKAEWNPVVGTQMAYVCELGP NQGWKAVVADMVVNEDGEVEQRVLNERNFLVATRLDMLWHPAGTFLCVRVASKGPTEYFL FHVAERNVPITRLSIKRGYIPTRFAWQTGGDKFAVLLKRDGVGAGLGETGVLQIFMIGKQ GPKVLHEVATSATHLFWAPRGGRLAAANFDKSLLHFFVLHDNNTITDKNKLSGISATNCE WDPTGRYFAVWVSSIHEQTLAPQYRIFDYTGNELFKKAIKPLSHFAWRPLPPTLLTQSDV AKARDMIKTLVHEYEATEKAHKAEEQERIDKERKSKEEDYIKRMRIAARYAEEKGMVQTR EEQRANSKWVRYNNNRLKALPDEEHMIHEDVTEYHLVSRRQVGTGVAKK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/610 Sequence name : 610 Sequence length : 709 VALUES OF COMPUTED PARAMETERS Coef20 : 3.473 CoefTot : 0.000 ChDiff : -1 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.153 1.282 0.113 0.613 MesoH : -0.455 0.328 -0.355 0.235 MuHd_075 : 46.565 24.975 11.139 8.571 MuHd_095 : 10.456 14.660 5.893 3.145 MuHd_100 : 9.292 13.100 4.374 2.180 MuHd_105 : 7.427 9.002 2.749 1.386 Hmax_075 : 12.833 15.517 0.924 5.437 Hmax_095 : 2.200 12.100 -0.102 3.570 Hmax_100 : -2.400 10.200 -1.656 2.880 Hmax_105 : 1.200 4.700 -1.341 3.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8269 0.1731 DFMC : 0.8785 0.1215
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 709 LmxM.17.1290 MTDVNFGRHILIDGLPNNVTPDKRDLFQRHFSRRIGELLGGEKFSLHLLTDPETALLSGAILSCVTETQAEAALAKLNRF 80 PFTKSAVLTTYRWSSLEEARVDDGPYVPPAMADDDDEEEAELVHNMAEDPDARPQFLIKSGVSFDCDWYWFNWEKNEPDL 160 YRRRKISKDDPLCRWSEVDRDNKKLHSGLVCSALPVSRPLPVWSTYGSMVISQHEKGLRVWAGRSMRLHFEITMDINAFM 240 VSPCEKYIIVQTPKDIGIINLRTAKKIRTIGNLDLHSDDLWPIMRFSADDSLVVVCKTGYRPMDSAEVPEGHLNIYVSET 320 MKLLKGRGSSGHSFAIPGLYKAEWNPVVGTQMAYVCELGPNQGWKAVVADMVVNEDGEVEQRVLNERNFLVATRLDMLWH 400 PAGTFLCVRVASKGPTEYFLFHVAERNVPITRLSIKRGYIPTRFAWQTGGDKFAVLLKRDGVGAGLGETGVLQIFMIGKQ 480 GPKVLHEVATSATHLFWAPRGGRLAAANFDKSLLHFFVLHDNNTITDKNKLSGISATNCEWDPTGRYFAVWVSSIHEQTL 560 APQYRIFDYTGNELFKKAIKPLSHFAWRPLPPTLLTQSDVAKARDMIKTLVHEYEATEKAHKAEEQERIDKERKSKEEDY 640 IKRMRIAARYAEEKGMVQTREEQRANSKWVRYNNNRLKALPDEEHMIHEDVTEYHLVSRRQVGTGVAKK 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ..................................................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.17.1290 8 TDVNFGR|HI 0.096 . LmxM.17.1290 23 NNVTPDK|RD 0.058 . LmxM.17.1290 24 NVTPDKR|DL 0.197 . LmxM.17.1290 29 KRDLFQR|HF 0.127 . LmxM.17.1290 33 FQRHFSR|RI 0.133 . LmxM.17.1290 34 QRHFSRR|IG 0.198 . LmxM.17.1290 43 ELLGGEK|FS 0.056 . LmxM.17.1290 76 AEAALAK|LN 0.060 . LmxM.17.1290 79 ALAKLNR|FP 0.100 . LmxM.17.1290 84 NRFPFTK|SA 0.083 . LmxM.17.1290 92 AVLTTYR|WS 0.082 . LmxM.17.1290 100 SSLEEAR|VD 0.077 . LmxM.17.1290 133 AEDPDAR|PQ 0.078 . LmxM.17.1290 139 RPQFLIK|SG 0.073 . LmxM.17.1290 155 YWFNWEK|NE 0.055 . LmxM.17.1290 162 NEPDLYR|RR 0.074 . LmxM.17.1290 163 EPDLYRR|RK 0.092 . LmxM.17.1290 164 PDLYRRR|KI 0.124 . LmxM.17.1290 165 DLYRRRK|IS 0.195 . LmxM.17.1290 168 RRRKISK|DD 0.079 . LmxM.17.1290 174 KDDPLCR|WS 0.092 . LmxM.17.1290 180 RWSEVDR|DN 0.136 . LmxM.17.1290 183 EVDRDNK|KL 0.117 . LmxM.17.1290 184 VDRDNKK|LH 0.087 . LmxM.17.1290 198 SALPVSR|PL 0.074 . LmxM.17.1290 216 VISQHEK|GL 0.073 . LmxM.17.1290 219 QHEKGLR|VW 0.068 . LmxM.17.1290 224 LRVWAGR|SM 0.136 . LmxM.17.1290 227 WAGRSMR|LH 0.263 . LmxM.17.1290 246 MVSPCEK|YI 0.081 . LmxM.17.1290 254 IIVQTPK|DI 0.087 . LmxM.17.1290 262 IGIINLR|TA 0.094 . LmxM.17.1290 265 INLRTAK|KI 0.152 . LmxM.17.1290 266 NLRTAKK|IR 0.099 . LmxM.17.1290 268 RTAKKIR|TI 0.137 . LmxM.17.1290 285 DLWPIMR|FS 0.078 . LmxM.17.1290 297 SLVVVCK|TG 0.065 . LmxM.17.1290 301 VCKTGYR|PM 0.080 . LmxM.17.1290 322 YVSETMK|LL 0.063 . LmxM.17.1290 325 ETMKLLK|GR 0.077 . LmxM.17.1290 327 MKLLKGR|GS 0.126 . LmxM.17.1290 341 AIPGLYK|AE 0.056 . LmxM.17.1290 365 GPNQGWK|AV 0.093 . LmxM.17.1290 382 DGEVEQR|VL 0.070 . LmxM.17.1290 387 QRVLNER|NF 0.076 . LmxM.17.1290 394 NFLVATR|LD 0.069 . LmxM.17.1290 409 GTFLCVR|VA 0.107 . LmxM.17.1290 413 CVRVASK|GP 0.062 . LmxM.17.1290 426 LFHVAER|NV 0.110 . LmxM.17.1290 432 RNVPITR|LS 0.079 . LmxM.17.1290 436 ITRLSIK|RG 0.059 . LmxM.17.1290 437 TRLSIKR|GY 0.235 . LmxM.17.1290 443 RGYIPTR|FA 0.160 . LmxM.17.1290 452 WQTGGDK|FA 0.057 . LmxM.17.1290 458 KFAVLLK|RD 0.064 . LmxM.17.1290 459 FAVLLKR|DG 0.189 . LmxM.17.1290 479 QIFMIGK|QG 0.068 . LmxM.17.1290 483 IGKQGPK|VL 0.061 . LmxM.17.1290 500 HLFWAPR|GG 0.087 . LmxM.17.1290 503 WAPRGGR|LA 0.207 . LmxM.17.1290 511 AAANFDK|SL 0.085 . LmxM.17.1290 528 NNTITDK|NK 0.059 . LmxM.17.1290 530 TITDKNK|LS 0.071 . LmxM.17.1290 546 EWDPTGR|YF 0.083 . LmxM.17.1290 565 TLAPQYR|IF 0.135 . LmxM.17.1290 576 TGNELFK|KA 0.082 . LmxM.17.1290 577 GNELFKK|AI 0.106 . LmxM.17.1290 580 LFKKAIK|PL 0.063 . LmxM.17.1290 588 LSHFAWR|PL 0.111 . LmxM.17.1290 602 TQSDVAK|AR 0.087 . LmxM.17.1290 604 SDVAKAR|DM 0.173 . LmxM.17.1290 608 KARDMIK|TL 0.065 . LmxM.17.1290 619 EYEATEK|AH 0.060 . LmxM.17.1290 622 ATEKAHK|AE 0.065 . LmxM.17.1290 628 KAEEQER|ID 0.075 . LmxM.17.1290 631 EQERIDK|ER 0.095 . LmxM.17.1290 633 ERIDKER|KS 0.104 . LmxM.17.1290 634 RIDKERK|SK 0.104 . LmxM.17.1290 636 DKERKSK|EE 0.148 . LmxM.17.1290 642 KEEDYIK|RM 0.056 . LmxM.17.1290 643 EEDYIKR|MR 0.153 . LmxM.17.1290 645 DYIKRMR|IA 0.087 . LmxM.17.1290 649 RMRIAAR|YA 0.228 . LmxM.17.1290 654 ARYAEEK|GM 0.068 . LmxM.17.1290 660 KGMVQTR|EE 0.089 . LmxM.17.1290 664 QTREEQR|AN 0.104 . LmxM.17.1290 668 EQRANSK|WV 0.072 . LmxM.17.1290 671 ANSKWVR|YN 0.125 . LmxM.17.1290 676 VRYNNNR|LK 0.071 . LmxM.17.1290 678 YNNNRLK|AL 0.096 . LmxM.17.1290 699 EYHLVSR|RQ 0.073 . LmxM.17.1290 700 YHLVSRR|QV 0.349 . LmxM.17.1290 708 VGTGVAK|K- 0.064 . LmxM.17.1290 709 GTGVAKK|-- 0.108 . ____________________________^_________________

  • Fasta :-

    >LmxM.17.1290 ATGACGGACGTCAACTTCGGTCGCCACATTCTTATCGATGGGCTCCCCAACAATGTCACT CCCGATAAGCGCGACCTCTTCCAGCGGCACTTCTCGCGGCGCATCGGGGAGCTGCTCGGC GGTGAGAAGTTCAGCCTGCATCTCCTGACCGATCCGGAGACAGCGCTCCTATCGGGTGCA ATCCTCAGCTGTGTGACAGAGACTCAGGCGGAGGCGGCGCTGGCGAAGCTGAATCGCTTC CCCTTCACCAAGTCTGCCGTGCTCACGACGTACCGCTGGAGCTCACTCGAGGAGGCGCGC GTGGACGATGGCCCGTACGTGCCCCCGGCTATGGCGGACGACGATGACGAGGAGGAGGCG GAGCTGGTGCACAATATGGCTGAGGACCCAGATGCGCGTCCGCAGTTCTTGATCAAGTCT GGCGTATCCTTCGACTGCGACTGGTACTGGTTCAACTGGGAGAAGAATGAGCCGGACCTG TACCGCCGCCGCAAGATCAGCAAGGACGACCCGCTCTGCCGCTGGTCCGAGGTGGACCGG GACAACAAGAAACTGCACTCCGGATTGGTGTGCAGTGCGCTGCCGGTGTCGCGTCCGCTG CCGGTGTGGTCCACGTACGGCTCCATGGTCATCTCACAGCACGAGAAGGGCCTGCGCGTG TGGGCCGGCCGCAGCATGCGCCTCCACTTCGAGATCACGATGGACATCAACGCCTTTATG GTGTCTCCGTGCGAGAAGTACATCATTGTCCAGACGCCGAAGGACATCGGCATCATCAAC CTGCGCACTGCAAAGAAAATCCGCACGATTGGCAACCTTGACCTGCACAGCGATGATCTC TGGCCCATCATGCGCTTCAGCGCGGATGATTCCCTGGTGGTGGTGTGCAAGACGGGTTAC CGCCCCATGGACTCGGCCGAAGTGCCGGAAGGCCACCTGAACATCTATGTCTCCGAGACG ATGAAGCTGCTCAAGGGTCGCGGCAGCTCCGGTCATAGCTTCGCCATCCCTGGCCTGTAC AAGGCGGAGTGGAACCCCGTGGTGGGCACACAGATGGCGTACGTCTGTGAGCTGGGCCCG AATCAAGGCTGGAAGGCTGTCGTGGCTGACATGGTGGTGAACGAGGACGGCGAGGTGGAG CAGCGCGTGCTGAACGAGCGCAACTTTCTCGTGGCAACGCGGCTGGACATGCTCTGGCAC CCGGCAGGGACCTTTCTGTGCGTGAGGGTGGCGTCGAAGGGGCCGACGGAGTATTTCCTT TTCCACGTCGCGGAGCGCAACGTGCCCATCACTCGCCTGTCCATCAAGCGTGGCTACATC CCGACCCGCTTCGCGTGGCAGACCGGCGGTGACAAGTTTGCCGTACTCCTGAAACGCGAT GGCGTCGGTGCCGGCCTTGGTGAGACCGGCGTGCTGCAGATCTTCATGATCGGCAAGCAA GGTCCCAAGGTGCTCCACGAGGTGGCCACATCGGCGACGCATTTGTTCTGGGCTCCCCGC GGCGGGCGACTGGCGGCTGCCAACTTCGACAAGTCGTTGCTGCACTTCTTCGTGCTGCAT GACAACAACACCATCACAGACAAGAACAAGCTGAGCGGCATCAGCGCGACGAACTGTGAG TGGGACCCGACTGGCCGCTACTTCGCCGTGTGGGTGTCGTCGATTCATGAGCAGACGCTC GCCCCACAGTACCGCATCTTCGACTACACCGGCAACGAGCTATTCAAGAAGGCCATCAAG CCCCTCTCGCACTTCGCCTGGCGCCCGCTGCCGCCCACGCTGCTCACACAGAGCGACGTG GCGAAGGCGCGCGACATGATAAAGACCCTCGTGCACGAATACGAGGCTACCGAGAAGGCG CACAAGGCTGAGGAGCAGGAGCGCATCGATAAGGAGCGCAAGTCGAAGGAGGAGGACTAC ATAAAGCGTATGAGGATTGCTGCCCGCTATGCTGAGGAGAAGGGCATGGTGCAGACGCGC GAGGAGCAGCGCGCCAACTCGAAGTGGGTGCGCTACAACAACAACCGCCTAAAGGCACTG CCGGACGAGGAGCACATGATTCACGAGGACGTCACGGAATACCACCTCGTGTCGCGTCGC CAGGTCGGCACGGGTGTGGCGAAGAAGTAA
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  • Fasta :-

    MTDVNFGRHILIDGLPNNVTPDKRDLFQRHFSRRIGELLGGEKFSLHLLTDPETALLSGA ILSCVTETQAEAALAKLNRFPFTKSAVLTTYRWSSLEEARVDDGPYVPPAMADDDDEEEA ELVHNMAEDPDARPQFLIKSGVSFDCDWYWFNWEKNEPDLYRRRKISKDDPLCRWSEVDR DNKKLHSGLVCSALPVSRPLPVWSTYGSMVISQHEKGLRVWAGRSMRLHFEITMDINAFM VSPCEKYIIVQTPKDIGIINLRTAKKIRTIGNLDLHSDDLWPIMRFSADDSLVVVCKTGY RPMDSAEVPEGHLNIYVSETMKLLKGRGSSGHSFAIPGLYKAEWNPVVGTQMAYVCELGP NQGWKAVVADMVVNEDGEVEQRVLNERNFLVATRLDMLWHPAGTFLCVRVASKGPTEYFL FHVAERNVPITRLSIKRGYIPTRFAWQTGGDKFAVLLKRDGVGAGLGETGVLQIFMIGKQ GPKVLHEVATSATHLFWAPRGGRLAAANFDKSLLHFFVLHDNNTITDKNKLSGISATNCE WDPTGRYFAVWVSSIHEQTLAPQYRIFDYTGNELFKKAIKPLSHFAWRPLPPTLLTQSDV AKARDMIKTLVHEYEATEKAHKAEEQERIDKERKSKEEDYIKRMRIAARYAEEKGMVQTR EEQRANSKWVRYNNNRLKALPDEEHMIHEDVTEYHLVSRRQVGTGVAKK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.17.1290176 SLCRWSEVDR0.99unspLmxM.17.1290176 SLCRWSEVDR0.99unspLmxM.17.1290176 SLCRWSEVDR0.99unspLmxM.17.1290287 SIMRFSADDS0.994unspLmxM.17.1290434 SITRLSIKRG0.997unspLmxM.17.1290635 SKERKSKEED0.998unspLmxM.17.129095 SYRWSSLEEA0.998unspLmxM.17.1290167 SRRKISKDDP0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India