LmxM.17.1400 | otubain cysteine peptidase, Clan CA, family C65, putative

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_IDPredictionOTHERSPmTPCS_Position
LmxM.17.1400OTHER0.9998510.0001400.000009
No Results

  • Fasta :-

    >LmxM.17.1400 MDEGLPIDASEAQLEAIRREVAHYPLLSLSLPLNKESMIVKEMEHDDAYLAQTLSLFGAS PVSTKQYDFDSIRYSRRDGNCFYRCAGFRLCELIVEHPERAAEYVALLKSREESLSRLFG LFVFDFTDALAEILRGVTDKTITSVAQVYDRFISEDGAYVLAALRYLISAYLQEHEEEYE PFVSGLGYGTVRDYCNAEVELVDHESDNVQLAAFAKAFNVCIKVYALDRNAGNNITEYSF NGEDNDTGDRLVVRLLYMPGHYNLLGRGPG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/261 Sequence name : 261 Sequence length : 270 VALUES OF COMPUTED PARAMETERS Coef20 : 3.393 CoefTot : 0.000 ChDiff : -19 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.159 1.594 0.047 0.637 MesoH : -0.923 0.423 -0.396 0.208 MuHd_075 : 20.773 6.134 4.068 3.084 MuHd_095 : 29.665 13.778 6.550 4.729 MuHd_100 : 19.731 6.952 4.168 2.895 MuHd_105 : 19.798 6.335 4.651 2.704 Hmax_075 : 3.500 8.167 -1.036 2.963 Hmax_095 : 2.800 7.525 -0.583 3.180 Hmax_100 : -2.300 4.100 -2.261 2.250 Hmax_105 : 2.800 9.450 0.191 4.037 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9429 0.0571 DFMC : 0.9526 0.0474
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 270 LmxM.17.1400 MDEGLPIDASEAQLEAIRREVAHYPLLSLSLPLNKESMIVKEMEHDDAYLAQTLSLFGASPVSTKQYDFDSIRYSRRDGN 80 CFYRCAGFRLCELIVEHPERAAEYVALLKSREESLSRLFGLFVFDFTDALAEILRGVTDKTITSVAQVYDRFISEDGAYV 160 LAALRYLISAYLQEHEEEYEPFVSGLGYGTVRDYCNAEVELVDHESDNVQLAAFAKAFNVCIKVYALDRNAGNNITEYSF 240 NGEDNDTGDRLVVRLLYMPGHYNLLGRGPG 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.17.1400 18 AQLEAIR|RE 0.063 . LmxM.17.1400 19 QLEAIRR|EV 0.159 . LmxM.17.1400 35 LSLPLNK|ES 0.061 . LmxM.17.1400 41 KESMIVK|EM 0.068 . LmxM.17.1400 65 ASPVSTK|QY 0.060 . LmxM.17.1400 73 YDFDSIR|YS 0.091 . LmxM.17.1400 76 DSIRYSR|RD 0.191 . LmxM.17.1400 77 SIRYSRR|DG 0.172 . LmxM.17.1400 84 DGNCFYR|CA 0.130 . LmxM.17.1400 89 YRCAGFR|LC 0.096 . LmxM.17.1400 100 IVEHPER|AA 0.116 . LmxM.17.1400 109 EYVALLK|SR 0.070 . LmxM.17.1400 111 VALLKSR|EE 0.080 . LmxM.17.1400 117 REESLSR|LF 0.083 . LmxM.17.1400 135 ALAEILR|GV 0.148 . LmxM.17.1400 140 LRGVTDK|TI 0.080 . LmxM.17.1400 151 VAQVYDR|FI 0.119 . LmxM.17.1400 165 YVLAALR|YL 0.073 . LmxM.17.1400 192 LGYGTVR|DY 0.114 . LmxM.17.1400 216 QLAAFAK|AF 0.076 . LmxM.17.1400 223 AFNVCIK|VY 0.064 . LmxM.17.1400 229 KVYALDR|NA 0.104 . LmxM.17.1400 250 DNDTGDR|LV 0.078 . LmxM.17.1400 254 GDRLVVR|LL 0.088 . LmxM.17.1400 267 HYNLLGR|GP 0.122 . ____________________________^_________________

  • Fasta :-

    >LmxM.17.1400 ATGGATGAGGGTCTGCCAATCGACGCGAGCGAGGCACAGCTCGAAGCCATCCGGAGAGAG GTGGCGCACTACCCGTTACTGTCGCTCTCGCTGCCGCTCAACAAGGAGTCGATGATTGTG AAGGAGATGGAGCACGACGACGCCTACCTTGCCCAAACATTGTCGCTCTTTGGGGCCTCG CCGGTGTCCACAAAGCAGTACGACTTCGACAGCATACGGTACTCGCGCCGCGATGGCAAC TGCTTCTACCGCTGCGCCGGCTTTCGCCTGTGCGAGCTCATCGTCGAGCACCCGGAGAGG GCGGCGGAGTACGTGGCGCTGCTCAAATCACGAGAGGAGAGCCTGTCCCGGTTGTTTGGC CTCTTCGTGTTCGATTTCACAGATGCCTTGGCGGAGATCCTGAGGGGCGTGACGGACAAG ACGATCACTTCCGTTGCACAAGTCTACGATCGCTTCATCTCTGAAGACGGCGCCTACGTT CTGGCGGCGCTACGCTACTTGATCTCCGCTTACCTGCAAGAACACGAGGAGGAGTACGAG CCTTTCGTCAGCGGACTTGGCTACGGCACGGTGCGCGACTACTGCAACGCCGAGGTGGAG CTGGTGGATCACGAGAGCGACAATGTGCAGCTGGCCGCCTTTGCAAAGGCCTTCAACGTC TGCATCAAGGTCTACGCGCTGGACCGAAATGCAGGCAACAATATCACCGAGTACTCTTTT AATGGCGAGGACAACGACACTGGAGACCGACTGGTGGTGCGCCTGCTTTACATGCCCGGC CACTACAACCTTCTCGGGCGGGGTCCCGGCTGA
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  • Fasta :-

    MDEGLPIDASEAQLEAIRREVAHYPLLSLSLPLNKESMIVKEMEHDDAYLAQTLSLFGAS PVSTKQYDFDSIRYSRRDGNCFYRCAGFRLCELIVEHPERAAEYVALLKSREESLSRLFG LFVFDFTDALAEILRGVTDKTITSVAQVYDRFISEDGAYVLAALRYLISAYLQEHEEEYE PFVSGLGYGTVRDYCNAEVELVDHESDNVQLAAFAKAFNVCIKVYALDRNAGNNITEYSF NGEDNDTGDRLVVRLLYMPGHYNLLGRGPG

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.17.1400114 SSREESLSRL0.995unspLmxM.17.1400114 SSREESLSRL0.995unspLmxM.17.1400114 SSREESLSRL0.995unspLmxM.17.140063 SASPVSTKQY0.994unspLmxM.17.140075 SSIRYSRRDG0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India