LmxM.18.0610 | metallo-peptidase, Clan MA(E), Family M41

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005524      GO:0004222      

  • Computed_GO_Functions:  ATP binding      metalloendopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.18.0610OTHER0.9989430.0008560.000201
No Results

  • Fasta :-

    >LmxM.18.0610 MSLTDTQSPEYQRGVNDAERHRRATEENWIRPALGPIVWLGVPFLLAWMYMRRVSLGSPL GSGSASGSSNPFTSMMEQMMPVKKRQFRVDVKGTKFSDVVGIPEAKAEVRQYVDFLTEPN KFTRLGARLPKGCLLTGEPGTGKTLLAKAVAGEANVAFFSCNGADFIELIGGSGPKRVRE LFEEARAAAPAIIFIDEIDAIGSRAGKQGGSVSSEENRTINQLLAELDGLSTSADPIVVL AATNFQDNIDKALLREGRFDRKIAIEMPDLSARRELFEHYLQRICTGDPNGRTKDENGKE LTLDTSVSNKALADQLADLTPGLSPATVATVVNEAALQSGIAGKPLVQLPGLLEALDNTL MGRKHRNRQSDQSARRTAIHEAGHALTAWMLPIVQKVLKISVTPRGHAMGYTQRAGTEFH EYQTNATLFADMVVMLGGRAAEEVMLGDVSAGAMDDLQRATDVALKQMLAFGMSTHTGLL SYHPDYTQAGRDFTTFSNEAQYRAELEAQKLLAAAHSTAVDIIKRHKDKMEIMVKALLEK KELSTRNIEELWGPRPSTPTVEDIVHKVIEVTGSYAEITATVGPAAAAVVTPSIAGVY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/296 Sequence name : 296 Sequence length : 598 VALUES OF COMPUTED PARAMETERS Coef20 : 3.413 CoefTot : 0.234 ChDiff : -6 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.071 1.800 0.255 0.818 MesoH : -0.354 0.385 -0.340 0.229 MuHd_075 : 8.517 7.179 3.429 3.101 MuHd_095 : 30.405 16.543 7.588 5.923 MuHd_100 : 29.234 15.162 6.925 5.677 MuHd_105 : 25.111 11.773 5.762 4.843 Hmax_075 : -5.300 -2.333 -2.352 0.817 Hmax_095 : 4.400 3.900 -0.512 2.660 Hmax_100 : 4.600 3.900 -0.512 2.660 Hmax_105 : 4.900 1.050 -0.978 1.768 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8380 0.1620 DFMC : 0.8733 0.1267
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 598 LmxM.18.0610 MSLTDTQSPEYQRGVNDAERHRRATEENWIRPALGPIVWLGVPFLLAWMYMRRVSLGSPLGSGSASGSSNPFTSMMEQMM 80 PVKKRQFRVDVKGTKFSDVVGIPEAKAEVRQYVDFLTEPNKFTRLGARLPKGCLLTGEPGTGKTLLAKAVAGEANVAFFS 160 CNGADFIELIGGSGPKRVRELFEEARAAAPAIIFIDEIDAIGSRAGKQGGSVSSEENRTINQLLAELDGLSTSADPIVVL 240 AATNFQDNIDKALLREGRFDRKIAIEMPDLSARRELFEHYLQRICTGDPNGRTKDENGKELTLDTSVSNKALADQLADLT 320 PGLSPATVATVVNEAALQSGIAGKPLVQLPGLLEALDNTLMGRKHRNRQSDQSARRTAIHEAGHALTAWMLPIVQKVLKI 400 SVTPRGHAMGYTQRAGTEFHEYQTNATLFADMVVMLGGRAAEEVMLGDVSAGAMDDLQRATDVALKQMLAFGMSTHTGLL 480 SYHPDYTQAGRDFTTFSNEAQYRAELEAQKLLAAAHSTAVDIIKRHKDKMEIMVKALLEKKELSTRNIEELWGPRPSTPT 560 VEDIVHKVIEVTGSYAEITATVGPAAAAVVTPSIAGVY 640 ......................P......................................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ...................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.18.0610 13 QSPEYQR|GV 0.172 . LmxM.18.0610 20 GVNDAER|HR 0.092 . LmxM.18.0610 22 NDAERHR|RA 0.095 . LmxM.18.0610 23 DAERHRR|AT 0.544 *ProP* LmxM.18.0610 31 TEENWIR|PA 0.097 . LmxM.18.0610 52 LAWMYMR|RV 0.109 . LmxM.18.0610 53 AWMYMRR|VS 0.115 . LmxM.18.0610 83 EQMMPVK|KR 0.056 . LmxM.18.0610 84 QMMPVKK|RQ 0.092 . LmxM.18.0610 85 MMPVKKR|QF 0.233 . LmxM.18.0610 88 VKKRQFR|VD 0.322 . LmxM.18.0610 92 QFRVDVK|GT 0.063 . LmxM.18.0610 95 VDVKGTK|FS 0.068 . LmxM.18.0610 106 VGIPEAK|AE 0.059 . LmxM.18.0610 110 EAKAEVR|QY 0.095 . LmxM.18.0610 121 FLTEPNK|FT 0.062 . LmxM.18.0610 124 EPNKFTR|LG 0.090 . LmxM.18.0610 128 FTRLGAR|LP 0.085 . LmxM.18.0610 131 LGARLPK|GC 0.104 . LmxM.18.0610 143 GEPGTGK|TL 0.058 . LmxM.18.0610 148 GKTLLAK|AV 0.078 . LmxM.18.0610 176 IGGSGPK|RV 0.072 . LmxM.18.0610 177 GGSGPKR|VR 0.168 . LmxM.18.0610 179 SGPKRVR|EL 0.091 . LmxM.18.0610 186 ELFEEAR|AA 0.104 . LmxM.18.0610 204 IDAIGSR|AG 0.090 . LmxM.18.0610 207 IGSRAGK|QG 0.159 . LmxM.18.0610 218 VSSEENR|TI 0.120 . LmxM.18.0610 251 FQDNIDK|AL 0.060 . LmxM.18.0610 255 IDKALLR|EG 0.072 . LmxM.18.0610 258 ALLREGR|FD 0.245 . LmxM.18.0610 261 REGRFDR|KI 0.303 . LmxM.18.0610 262 EGRFDRK|IA 0.086 . LmxM.18.0610 273 MPDLSAR|RE 0.070 . LmxM.18.0610 274 PDLSARR|EL 0.107 . LmxM.18.0610 283 FEHYLQR|IC 0.092 . LmxM.18.0610 292 TGDPNGR|TK 0.087 . LmxM.18.0610 294 DPNGRTK|DE 0.096 . LmxM.18.0610 299 TKDENGK|EL 0.060 . LmxM.18.0610 310 DTSVSNK|AL 0.088 . LmxM.18.0610 344 QSGIAGK|PL 0.067 . LmxM.18.0610 363 DNTLMGR|KH 0.073 . LmxM.18.0610 364 NTLMGRK|HR 0.067 . LmxM.18.0610 366 LMGRKHR|NR 0.210 . LmxM.18.0610 368 GRKHRNR|QS 0.168 . LmxM.18.0610 375 QSDQSAR|RT 0.108 . LmxM.18.0610 376 SDQSARR|TA 0.177 . LmxM.18.0610 396 MLPIVQK|VL 0.062 . LmxM.18.0610 399 IVQKVLK|IS 0.063 . LmxM.18.0610 405 KISVTPR|GH 0.146 . LmxM.18.0610 414 AMGYTQR|AG 0.078 . LmxM.18.0610 439 VVMLGGR|AA 0.099 . LmxM.18.0610 459 AMDDLQR|AT 0.122 . LmxM.18.0610 466 ATDVALK|QM 0.057 . LmxM.18.0610 491 DYTQAGR|DF 0.085 . LmxM.18.0610 503 SNEAQYR|AE 0.101 . LmxM.18.0610 510 AELEAQK|LL 0.059 . LmxM.18.0610 524 TAVDIIK|RH 0.066 . LmxM.18.0610 525 AVDIIKR|HK 0.215 . LmxM.18.0610 527 DIIKRHK|DK 0.070 . LmxM.18.0610 529 IKRHKDK|ME 0.074 . LmxM.18.0610 535 KMEIMVK|AL 0.059 . LmxM.18.0610 540 VKALLEK|KE 0.056 . LmxM.18.0610 541 KALLEKK|EL 0.083 . LmxM.18.0610 546 KKELSTR|NI 0.087 . LmxM.18.0610 555 EELWGPR|PS 0.073 . LmxM.18.0610 567 VEDIVHK|VI 0.066 . ____________________________^_________________

  • Fasta :-

    >LmxM.18.0610 ATGTCTCTCACCGATACGCAGAGCCCCGAATACCAACGGGGCGTCAACGACGCGGAGAGG CATCGCAGGGCGACAGAGGAAAACTGGATACGGCCCGCCCTCGGCCCCATAGTATGGCTC GGCGTGCCCTTCTTGCTGGCGTGGATGTATATGCGTCGTGTCTCGCTGGGCAGTCCGCTC GGCAGCGGATCCGCCAGCGGCAGCAGCAACCCTTTCACGAGCATGATGGAGCAGATGATG CCTGTCAAGAAGCGGCAGTTTCGCGTCGACGTGAAGGGCACAAAGTTCTCCGACGTCGTC GGCATCCCGGAGGCGAAGGCCGAGGTGCGCCAGTACGTCGACTTCCTCACAGAACCGAAC AAGTTCACTCGGCTCGGGGCGCGACTGCCGAAGGGGTGCCTGTTGACGGGGGAACCCGGC ACAGGCAAGACATTGCTAGCCAAGGCCGTCGCCGGTGAAGCGAATGTGGCTTTCTTTAGC TGCAACGGTGCGGACTTTATTGAGCTCATCGGTGGCAGTGGCCCAAAGCGGGTGCGTGAG CTCTTCGAGGAAGCGCGGGCGGCCGCGCCGGCGATCATCTTCATTGATGAAATCGACGCC ATCGGCTCCCGCGCTGGCAAGCAGGGCGGCTCCGTCAGCAGCGAGGAGAACCGCACCATC AACCAGCTGCTCGCCGAGTTGGATGGGCTCAGCACGAGCGCCGATCCCATCGTTGTGCTG GCGGCCACGAATTTCCAGGACAACATCGACAAGGCGCTGCTGCGCGAGGGCCGCTTCGAC CGAAAAATTGCCATCGAGATGCCCGACCTCTCAGCCCGTCGCGAGCTCTTCGAGCACTAT CTCCAGCGCATCTGCACCGGTGACCCAAACGGCCGCACAAAGGACGAGAACGGCAAGGAG CTGACGCTAGACACCAGCGTGAGCAACAAGGCGCTGGCAGACCAGCTGGCGGACCTCACG CCGGGGCTGTCGCCGGCCACGGTGGCCACGGTCGTAAACGAGGCGGCACTGCAGAGCGGA ATAGCCGGTAAGCCGCTCGTGCAGCTGCCGGGTCTGCTGGAGGCATTGGACAACACGCTG ATGGGCCGTAAGCACCGCAATCGCCAGAGCGACCAATCGGCTCGCCGCACCGCGATTCAC GAAGCCGGTCACGCCCTGACGGCGTGGATGTTGCCGATCGTGCAGAAAGTGTTGAAGATC AGCGTCACCCCGCGCGGGCACGCGATGGGCTACACGCAGCGCGCCGGGACTGAGTTTCAC GAATATCAAACGAACGCGACGCTCTTCGCCGACATGGTGGTCATGCTCGGCGGCCGCGCC GCAGAGGAGGTGATGCTAGGCGACGTGTCGGCCGGTGCGATGGACGACTTACAGCGGGCC ACCGACGTGGCGCTCAAGCAGATGCTGGCGTTTGGCATGAGCACACACACGGGGCTGCTG TCGTACCACCCCGATTACACTCAAGCAGGGCGCGACTTCACAACCTTTTCCAACGAGGCC CAGTACCGCGCCGAACTGGAGGCGCAGAAGCTGCTTGCAGCCGCCCACTCCACCGCCGTG GACATCATCAAGCGGCACAAGGACAAAATGGAGATTATGGTGAAGGCGCTACTGGAGAAG AAGGAGCTTTCCACTCGCAACATCGAGGAGCTCTGGGGCCCGCGGCCGTCGACGCCGACG GTGGAGGACATTGTGCACAAGGTCATCGAGGTGACCGGCAGCTACGCCGAGATCACCGCG ACCGTTGGTCCGGCGGCGGCAGCGGTGGTGACGCCGAGCATTGCGGGAGTGTATTAG
  • Download Fasta

  • Fasta :-

    MSLTDTQSPEYQRGVNDAERHRRATEENWIRPALGPIVWLGVPFLLAWMYMRRVSLGSPL GSGSASGSSNPFTSMMEQMMPVKKRQFRVDVKGTKFSDVVGIPEAKAEVRQYVDFLTEPN KFTRLGARLPKGCLLTGEPGTGKTLLAKAVAGEANVAFFSCNGADFIELIGGSGPKRVRE LFEEARAAAPAIIFIDEIDAIGSRAGKQGGSVSSEENRTINQLLAELDGLSTSADPIVVL AATNFQDNIDKALLREGRFDRKIAIEMPDLSARRELFEHYLQRICTGDPNGRTKDENGKE LTLDTSVSNKALADQLADLTPGLSPATVATVVNEAALQSGIAGKPLVQLPGLLEALDNTL MGRKHRNRQSDQSARRTAIHEAGHALTAWMLPIVQKVLKISVTPRGHAMGYTQRAGTEFH EYQTNATLFADMVVMLGGRAAEEVMLGDVSAGAMDDLQRATDVALKQMLAFGMSTHTGLL SYHPDYTQAGRDFTTFSNEAQYRAELEAQKLLAAAHSTAVDIIKRHKDKMEIMVKALLEK KELSTRNIEELWGPRPSTPTVEDIVHKVIEVTGSYAEITATVGPAAAAVVTPSIAGVY

  • title: ATP binding site
  • coordinates: E138,P139,G140,T141,G142,K143,T144,L145,D196,N244
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.18.0610373 SQSDQSARRT0.996unspLmxM.18.0610373 SQSDQSARRT0.996unspLmxM.18.0610373 SQSDQSARRT0.996unspLmxM.18.0610544 SKKELSTRNI0.994unspLmxM.18.061055 SMRRVSLGSP0.994unspLmxM.18.0610213 SGGSVSSEEN0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India