LmxM.19.0130 | Der1-like family, putative

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_IDPredictionOTHERSPmTPCS_Position
LmxM.19.0130OTHER0.9996220.0001330.000246
No Results

  • Fasta :-

    >LmxM.19.0130 MSQNFGDWFNQLGFITRASLVASVGLSAACSLNVVGVGSVILTSEAITSLQVWRFVTAAL YLGNFSFPWLMTVAMFVTYVKNNEESDFKGKTADMAYMFLLLVGVLSSAGLFFNVYVTSF SFLMALCWIFCKRHPEQELTLFGFSFRSAVFPWVLMALHLVMGQGLLADVFGIVAGHAYI FFKDVFPVSHNQRWLETPMWLRRQFPQPTHRVGSFGPEVHPYDPRFQAAWRGAAQQRSSG SHNWGRGQTLGSS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/279 Sequence name : 279 Sequence length : 253 VALUES OF COMPUTED PARAMETERS Coef20 : 4.027 CoefTot : -0.416 ChDiff : 4 ZoneTo : 83 KR : 3 DE : 2 CleavSite : 56 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.224 2.112 0.434 0.789 MesoH : 1.045 1.249 0.041 0.498 MuHd_075 : 27.129 21.092 6.333 6.583 MuHd_095 : 22.954 16.256 5.794 4.858 MuHd_100 : 35.724 20.158 8.623 7.134 MuHd_105 : 42.107 24.976 10.454 8.748 Hmax_075 : 12.800 19.500 2.318 5.565 Hmax_095 : 11.900 19.200 -0.368 5.267 Hmax_100 : 19.800 14.200 2.337 6.300 Hmax_105 : 19.200 14.467 2.620 6.170 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8053 0.1947 DFMC : 0.5055 0.4945
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 253 LmxM.19.0130 MSQNFGDWFNQLGFITRASLVASVGLSAACSLNVVGVGSVILTSEAITSLQVWRFVTAALYLGNFSFPWLMTVAMFVTYV 80 KNNEESDFKGKTADMAYMFLLLVGVLSSAGLFFNVYVTSFSFLMALCWIFCKRHPEQELTLFGFSFRSAVFPWVLMALHL 160 VMGQGLLADVFGIVAGHAYIFFKDVFPVSHNQRWLETPMWLRRQFPQPTHRVGSFGPEVHPYDPRFQAAWRGAAQQRSSG 240 SHNWGRGQTLGSS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.19.0130 17 QLGFITR|AS 0.082 . LmxM.19.0130 54 TSLQVWR|FV 0.195 . LmxM.19.0130 81 MFVTYVK|NN 0.059 . LmxM.19.0130 89 NEESDFK|GK 0.062 . LmxM.19.0130 91 ESDFKGK|TA 0.084 . LmxM.19.0130 132 LCWIFCK|RH 0.061 . LmxM.19.0130 133 CWIFCKR|HP 0.238 . LmxM.19.0130 147 LFGFSFR|SA 0.115 . LmxM.19.0130 183 HAYIFFK|DV 0.128 . LmxM.19.0130 193 PVSHNQR|WL 0.114 . LmxM.19.0130 202 ETPMWLR|RQ 0.074 . LmxM.19.0130 203 TPMWLRR|QF 0.156 . LmxM.19.0130 211 FPQPTHR|VG 0.093 . LmxM.19.0130 225 VHPYDPR|FQ 0.088 . LmxM.19.0130 231 RFQAAWR|GA 0.148 . LmxM.19.0130 237 RGAAQQR|SS 0.191 . LmxM.19.0130 246 GSHNWGR|GQ 0.106 . ____________________________^_________________

  • Fasta :-

    >LmxM.19.0130 ATGTCGCAGAACTTTGGCGACTGGTTCAATCAGCTGGGGTTCATCACCCGTGCCTCGCTC GTCGCGTCTGTGGGCCTGTCCGCCGCCTGCTCCCTCAACGTGGTGGGTGTCGGCTCGGTT ATCCTCACCTCCGAGGCCATCACCTCGCTGCAGGTATGGCGCTTTGTAACAGCCGCCCTC TACCTCGGCAATTTCTCTTTTCCATGGCTCATGACGGTTGCAATGTTTGTCACGTACGTC AAGAACAACGAGGAGAGCGACTTCAAAGGCAAGACGGCAGACATGGCGTACATGTTTCTG CTGCTGGTGGGTGTCCTCTCCTCTGCCGGCCTCTTTTTTAATGTCTACGTGACGAGTTTC TCGTTCCTAATGGCGCTGTGCTGGATTTTCTGCAAGCGACACCCGGAGCAGGAGCTGACG CTCTTTGGATTCTCCTTCCGCTCGGCTGTGTTTCCGTGGGTGTTGATGGCACTGCACCTC GTCATGGGGCAGGGGCTGCTTGCTGATGTTTTTGGCATAGTGGCCGGACACGCCTACATA TTTTTCAAAGATGTTTTTCCAGTTTCACACAATCAGCGGTGGCTGGAGACTCCGATGTGG CTGCGGCGCCAGTTCCCGCAGCCGACGCACCGCGTCGGCTCCTTTGGCCCTGAGGTGCAC CCGTACGACCCTCGCTTTCAGGCGGCATGGCGTGGCGCAGCTCAGCAGAGGAGCAGTGGC TCGCACAACTGGGGACGTGGCCAGACGCTCGGTAGCAGCTGA
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  • Fasta :-

    MSQNFGDWFNQLGFITRASLVASVGLSAACSLNVVGVGSVILTSEAITSLQVWRFVTAAL YLGNFSFPWLMTVAMFVTYVKNNEESDFKGKTADMAYMFLLLVGVLSSAGLFFNVYVTSF SFLMALCWIFCKRHPEQELTLFGFSFRSAVFPWVLMALHLVMGQGLLADVFGIVAGHAYI FFKDVFPVSHNQRWLETPMWLRRQFPQPTHRVGSFGPEVHPYDPRFQAAWRGAAQQRSSG SHNWGRGQTLGSS

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India