LmxM.19.1590 | ATP-dependent zinc metallopeptidase

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005524      GO:0004222      

  • Computed_GO_Functions:  ATP binding      metalloendopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.19.1590OTHER0.9999620.0000140.000024
No Results

  • Fasta :-

    >LmxM.19.1590 MDPLQREASRNSEEGAAGGKGSSYFRGFFDAEKRRKVVNHDPTVGQAIGGAVVMALPVAL IIVLVMRRRARLAAQAGSGAAPKEGGFFSEMQKMMRQTVNPMGEKDFKVSVKDTKFSDVI GIPEALAEVQQYVNFLKMPQVFTRLGGRLPKGCILTGEPGTGKTLLAKAVAGEANVPFYS CSGSDFIEVYAGSGPKRVRELFAAAKKDAPSVIFIDEIDAVGSRSSGNGAMGLSSEENRT INQLLAELDGLQSNEAVVVFAGTNFVDSLDKALLREGRFDRKVEIPMPDRQARQDLFRHY LSRIACEDAISLSKKLAELTPGVSPATIAAIVNEGALSAAIKDKAAVTAVDLLPAIDDVL IGKKHRSRMSDDAARRVALHESGHALVAWLLPEQTDVVKISITPRGPAGGFTQQVGREVL DMATEFSLFTDICVMLGGRLAEMTQHESLTTGAQDDYQRATQTAIREFLAFGMSRQVGLL SYEPQRLTEGRMHQKHSEAAHKMAEEEAARLVAAASDHVKVLLRSHDAVLRKLAASLFER KELLREDIEAIVGPRPGTSSAVSEQTRAALRRFVDASEAAALQRQTAREAMCATLSTA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/893 Sequence name : 893 Sequence length : 598 VALUES OF COMPUTED PARAMETERS Coef20 : 3.117 CoefTot : 0.000 ChDiff : 1 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.353 2.859 0.498 0.911 MesoH : -0.450 0.505 -0.309 0.240 MuHd_075 : 19.165 8.932 4.860 5.243 MuHd_095 : 48.166 21.858 10.832 8.122 MuHd_100 : 42.437 17.122 9.082 7.334 MuHd_105 : 31.733 11.288 6.291 5.962 Hmax_075 : -0.800 1.100 -1.695 2.020 Hmax_095 : 6.900 4.600 -0.480 2.500 Hmax_100 : 6.900 4.600 -0.480 2.430 Hmax_105 : -6.100 -3.325 -3.661 0.927 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9643 0.0357 DFMC : 0.9786 0.0214
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 598 LmxM.19.1590 MDPLQREASRNSEEGAAGGKGSSYFRGFFDAEKRRKVVNHDPTVGQAIGGAVVMALPVALIIVLVMRRRARLAAQAGSGA 80 APKEGGFFSEMQKMMRQTVNPMGEKDFKVSVKDTKFSDVIGIPEALAEVQQYVNFLKMPQVFTRLGGRLPKGCILTGEPG 160 TGKTLLAKAVAGEANVPFYSCSGSDFIEVYAGSGPKRVRELFAAAKKDAPSVIFIDEIDAVGSRSSGNGAMGLSSEENRT 240 INQLLAELDGLQSNEAVVVFAGTNFVDSLDKALLREGRFDRKVEIPMPDRQARQDLFRHYLSRIACEDAISLSKKLAELT 320 PGVSPATIAAIVNEGALSAAIKDKAAVTAVDLLPAIDDVLIGKKHRSRMSDDAARRVALHESGHALVAWLLPEQTDVVKI 400 SITPRGPAGGFTQQVGREVLDMATEFSLFTDICVMLGGRLAEMTQHESLTTGAQDDYQRATQTAIREFLAFGMSRQVGLL 480 SYEPQRLTEGRMHQKHSEAAHKMAEEEAARLVAAASDHVKVLLRSHDAVLRKLAASLFERKELLREDIEAIVGPRPGTSS 560 AVSEQTRAALRRFVDASEAAALQRQTAREAMCATLSTA 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ...........P.......................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.19.1590 6 -MDPLQR|EA 0.081 . LmxM.19.1590 10 LQREASR|NS 0.115 . LmxM.19.1590 20 EGAAGGK|GS 0.065 . LmxM.19.1590 26 KGSSYFR|GF 0.141 . LmxM.19.1590 33 GFFDAEK|RR 0.055 . LmxM.19.1590 34 FFDAEKR|RK 0.092 . LmxM.19.1590 35 FDAEKRR|KV 0.234 . LmxM.19.1590 36 DAEKRRK|VV 0.094 . LmxM.19.1590 67 IIVLVMR|RR 0.071 . LmxM.19.1590 68 IVLVMRR|RA 0.099 . LmxM.19.1590 69 VLVMRRR|AR 0.118 . LmxM.19.1590 71 VMRRRAR|LA 0.428 . LmxM.19.1590 83 GSGAAPK|EG 0.068 . LmxM.19.1590 93 FFSEMQK|MM 0.066 . LmxM.19.1590 96 EMQKMMR|QT 0.083 . LmxM.19.1590 105 VNPMGEK|DF 0.063 . LmxM.19.1590 108 MGEKDFK|VS 0.058 . LmxM.19.1590 112 DFKVSVK|DT 0.074 . LmxM.19.1590 115 VSVKDTK|FS 0.075 . LmxM.19.1590 137 QYVNFLK|MP 0.059 . LmxM.19.1590 144 MPQVFTR|LG 0.120 . LmxM.19.1590 148 FTRLGGR|LP 0.073 . LmxM.19.1590 151 LGGRLPK|GC 0.110 . LmxM.19.1590 163 GEPGTGK|TL 0.058 . LmxM.19.1590 168 GKTLLAK|AV 0.078 . LmxM.19.1590 196 YAGSGPK|RV 0.069 . LmxM.19.1590 197 AGSGPKR|VR 0.149 . LmxM.19.1590 199 SGPKRVR|EL 0.095 . LmxM.19.1590 206 ELFAAAK|KD 0.061 . LmxM.19.1590 207 LFAAAKK|DA 0.127 . LmxM.19.1590 224 IDAVGSR|SS 0.182 . LmxM.19.1590 239 LSSEENR|TI 0.131 . LmxM.19.1590 271 FVDSLDK|AL 0.057 . LmxM.19.1590 275 LDKALLR|EG 0.071 . LmxM.19.1590 278 ALLREGR|FD 0.300 . LmxM.19.1590 281 REGRFDR|KV 0.439 . LmxM.19.1590 282 EGRFDRK|VE 0.071 . LmxM.19.1590 290 EIPMPDR|QA 0.089 . LmxM.19.1590 293 MPDRQAR|QD 0.213 . LmxM.19.1590 298 ARQDLFR|HY 0.095 . LmxM.19.1590 303 FRHYLSR|IA 0.116 . LmxM.19.1590 314 DAISLSK|KL 0.057 . LmxM.19.1590 315 AISLSKK|LA 0.145 . LmxM.19.1590 342 ALSAAIK|DK 0.088 . LmxM.19.1590 344 SAAIKDK|AA 0.092 . LmxM.19.1590 363 DDVLIGK|KH 0.056 . LmxM.19.1590 364 DVLIGKK|HR 0.074 . LmxM.19.1590 366 LIGKKHR|SR 0.114 . LmxM.19.1590 368 GKKHRSR|MS 0.145 . LmxM.19.1590 375 MSDDAAR|RV 0.116 . LmxM.19.1590 376 SDDAARR|VA 0.113 . LmxM.19.1590 399 EQTDVVK|IS 0.058 . LmxM.19.1590 405 KISITPR|GP 0.141 . LmxM.19.1590 417 FTQQVGR|EV 0.118 . LmxM.19.1590 439 CVMLGGR|LA 0.087 . LmxM.19.1590 459 AQDDYQR|AT 0.106 . LmxM.19.1590 466 ATQTAIR|EF 0.080 . LmxM.19.1590 475 LAFGMSR|QV 0.105 . LmxM.19.1590 486 LSYEPQR|LT 0.109 . LmxM.19.1590 491 QRLTEGR|MH 0.097 . LmxM.19.1590 495 EGRMHQK|HS 0.085 . LmxM.19.1590 502 HSEAAHK|MA 0.082 . LmxM.19.1590 510 AEEEAAR|LV 0.108 . LmxM.19.1590 520 AASDHVK|VL 0.068 . LmxM.19.1590 524 HVKVLLR|SH 0.148 . LmxM.19.1590 531 SHDAVLR|KL 0.091 . LmxM.19.1590 532 HDAVLRK|LA 0.089 . LmxM.19.1590 540 AASLFER|KE 0.077 . LmxM.19.1590 541 ASLFERK|EL 0.068 . LmxM.19.1590 545 ERKELLR|ED 0.087 . LmxM.19.1590 555 EAIVGPR|PG 0.075 . LmxM.19.1590 567 AVSEQTR|AA 0.105 . LmxM.19.1590 571 QTRAALR|RF 0.077 . LmxM.19.1590 572 TRAALRR|FV 0.623 *ProP* LmxM.19.1590 584 EAAALQR|QT 0.095 . LmxM.19.1590 588 LQRQTAR|EA 0.131 . ____________________________^_________________

  • Fasta :-

    >LmxM.19.1590 ATGGATCCTCTGCAAAGGGAGGCGTCCAGAAACAGCGAGGAGGGGGCGGCGGGGGGAAAG GGGTCCTCCTACTTCCGCGGCTTCTTTGACGCAGAGAAGCGCCGCAAGGTGGTCAACCAT GACCCTACGGTAGGCCAGGCCATTGGCGGCGCCGTTGTAATGGCACTCCCGGTGGCGCTC ATCATTGTTTTAGTGATGCGTCGACGCGCGCGCCTCGCCGCTCAGGCGGGATCCGGCGCC GCGCCGAAGGAGGGCGGCTTCTTCAGCGAGATGCAGAAAATGATGCGACAGACTGTTAAT CCAATGGGTGAGAAGGATTTCAAGGTGTCGGTGAAGGACACGAAGTTCAGCGACGTCATT GGTATACCAGAGGCACTGGCAGAAGTACAGCAGTACGTCAACTTCCTGAAGATGCCGCAG GTTTTCACCCGGCTTGGCGGCCGCCTACCGAAGGGTTGTATTCTCACAGGAGAGCCCGGC ACCGGCAAGACGCTGCTCGCAAAGGCGGTGGCTGGTGAGGCGAATGTTCCCTTCTACAGC TGCAGTGGCTCTGACTTCATCGAGGTATACGCCGGCTCCGGACCAAAGCGAGTACGCGAG CTCTTCGCGGCAGCCAAGAAAGATGCCCCGTCTGTTATCTTCATCGACGAGATCGACGCC GTCGGCTCGCGCAGCAGTGGGAACGGTGCGATGGGTCTCAGCAGCGAGGAGAATCGAACC ATCAATCAACTGCTGGCCGAGTTGGACGGGCTGCAATCAAACGAGGCGGTCGTCGTGTTT GCGGGTACGAACTTTGTGGACAGCCTAGACAAGGCACTGCTGCGCGAGGGCCGCTTTGAC CGCAAGGTCGAGATCCCGATGCCGGACAGGCAGGCTCGCCAGGACCTCTTCCGCCACTAT CTTAGCCGCATCGCCTGCGAGGATGCCATCTCGCTCTCGAAGAAACTGGCCGAGCTGACT CCTGGCGTGTCACCAGCCACCATCGCAGCCATCGTCAACGAGGGTGCTCTCAGCGCCGCC ATCAAGGACAAAGCCGCCGTCACCGCCGTGGACCTCCTCCCCGCGATCGACGACGTACTC ATCGGCAAGAAGCACCGCAGTCGCATGAGCGACGATGCTGCGAGAAGGGTGGCACTACAC GAGAGCGGCCACGCACTTGTGGCATGGCTGCTCCCGGAGCAGACAGACGTGGTCAAGATC TCCATCACGCCGCGCGGCCCCGCCGGAGGCTTCACCCAGCAGGTCGGCCGCGAGGTGTTG GACATGGCGACGGAGTTTTCGCTCTTCACGGACATTTGCGTCATGCTGGGTGGACGGCTG GCGGAGATGACGCAGCACGAGTCCCTCACCACCGGTGCTCAGGACGACTACCAGCGGGCG ACTCAGACAGCTATCCGTGAGTTCCTGGCGTTTGGCATGTCTCGCCAGGTTGGTCTCCTC TCGTACGAACCGCAGCGACTCACCGAGGGCCGCATGCACCAGAAGCACTCGGAGGCAGCG CATAAGATGGCGGAGGAGGAGGCGGCCCGGCTGGTCGCTGCCGCGTCTGATCACGTGAAG GTGCTCTTGCGGTCTCATGATGCAGTACTGCGGAAGCTAGCGGCTTCGCTCTTCGAGAGG AAGGAGCTGCTGCGCGAGGATATAGAGGCAATTGTGGGACCGCGCCCTGGAACCAGCTCG GCCGTGTCGGAGCAGACGCGTGCGGCGCTTCGCCGCTTCGTCGACGCGTCTGAAGCCGCA GCGCTGCAACGCCAGACTGCAAGAGAGGCGATGTGTGCCACCCTTTCTACTGCGTAA
  • Download Fasta

  • Fasta :-

    MDPLQREASRNSEEGAAGGKGSSYFRGFFDAEKRRKVVNHDPTVGQAIGGAVVMALPVAL IIVLVMRRRARLAAQAGSGAAPKEGGFFSEMQKMMRQTVNPMGEKDFKVSVKDTKFSDVI GIPEALAEVQQYVNFLKMPQVFTRLGGRLPKGCILTGEPGTGKTLLAKAVAGEANVPFYS CSGSDFIEVYAGSGPKRVRELFAAAKKDAPSVIFIDEIDAVGSRSSGNGAMGLSSEENRT INQLLAELDGLQSNEAVVVFAGTNFVDSLDKALLREGRFDRKVEIPMPDRQARQDLFRHY LSRIACEDAISLSKKLAELTPGVSPATIAAIVNEGALSAAIKDKAAVTAVDLLPAIDDVL IGKKHRSRMSDDAARRVALHESGHALVAWLLPEQTDVVKISITPRGPAGGFTQQVGREVL DMATEFSLFTDICVMLGGRLAEMTQHESLTTGAQDDYQRATQTAIREFLAFGMSRQVGLL SYEPQRLTEGRMHQKHSEAAHKMAEEEAARLVAAASDHVKVLLRSHDAVLRKLAASLFER KELLREDIEAIVGPRPGTSSAVSEQTRAALRRFVDASEAAALQRQTAREAMCATLSTA

  • title: ATP binding site
  • coordinates: E158,P159,G160,T161,G162,K163,T164,L165,D216,N264
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.19.1590234 SAMGLSSEEN0.99unspLmxM.19.1590234 SAMGLSSEEN0.99unspLmxM.19.1590234 SAMGLSSEEN0.99unspLmxM.19.1590370 SRSRMSDDAA0.99unspLmxM.19.1590586 TLQRQTAREA0.992unspLmxM.19.159012 SASRNSEEGA0.997unspLmxM.19.1590110 SDFKVSVKDT0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India