LmxM.20.1185 | calpain-like cysteine peptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.20.1185OTHER0.9999900.0000070.000003
No Results

  • Fasta :-

    >LmxM.20.1185 MSHNGETGEWRELDEEQPTLSSKPQDATMNTYSTQEHGAPAHEEAYEGECAEHFAQEFHC LQHYSADIKAQVVPQQAFEEEAPQEYPKETDNNYDAPQHAHEVVGPGSAHARSMPAPHAA AAPPSAIVKPRTRHVKSVARWEAVGYDPRDGSDDEFEQSTCMAPVYEDEGEEGNEDASVF KHGEPDFKGEIMSCFDEPNLLYRIIDPKTKTWAFYNDSLQYEMHVQFIFGKHSKLQPLEN TTLRQNEEGQYVTFNKNGWWRSVVVDSYLPVSGGKLKYAKSATDPAEIWPAILEKAYAKL HGSYGRICSGDPLHALQDMTGFSTMRFDESLTDDKASDQLFSDLVHGIAAGYTVICSTPG RGPHDKDQELCEMYAQVGLVTGCAYTILEAKYIESKELRMVKVRNVWGHSVEWSGNWGND DTKWDANPDIAEECNFQKAADGMFWMSWKDARKYFNGGGVCFTHQAAYDYRMNCVFTEGV PSAVLEIEVQSPTCFTFVISQDDKRCQVNASEYKPVMISIAEPVEGEMYKVVMNSSANGA RPTSDKWTFLQARDVSLIHELDAGKYIVVPRIMPSDDPVEPVPYVLGMICSKEVGNGDVS VKFKRLDAGNRVFENFPKFEPELMEVEQPVQYQKRAPGEAFPMTQMGEELM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/245 Sequence name : 245 Sequence length : 651 VALUES OF COMPUTED PARAMETERS Coef20 : 2.659 CoefTot : -0.511 ChDiff : -45 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.265 1.388 0.207 0.566 MesoH : -0.719 0.108 -0.397 0.157 MuHd_075 : 13.511 4.542 3.018 3.185 MuHd_095 : 13.516 9.340 3.278 3.735 MuHd_100 : 6.940 6.740 2.072 2.784 MuHd_105 : 5.178 2.854 1.066 1.849 Hmax_075 : -8.662 -8.300 -5.526 -0.340 Hmax_095 : -9.450 -6.038 -5.926 0.455 Hmax_100 : -16.800 -6.000 -6.526 -0.180 Hmax_105 : -10.967 -9.333 -6.989 -0.152 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9949 0.0051 DFMC : 0.9940 0.0060
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 651 LmxM.20.1185 MSHNGETGEWRELDEEQPTLSSKPQDATMNTYSTQEHGAPAHEEAYEGECAEHFAQEFHCLQHYSADIKAQVVPQQAFEE 80 EAPQEYPKETDNNYDAPQHAHEVVGPGSAHARSMPAPHAAAAPPSAIVKPRTRHVKSVARWEAVGYDPRDGSDDEFEQST 160 CMAPVYEDEGEEGNEDASVFKHGEPDFKGEIMSCFDEPNLLYRIIDPKTKTWAFYNDSLQYEMHVQFIFGKHSKLQPLEN 240 TTLRQNEEGQYVTFNKNGWWRSVVVDSYLPVSGGKLKYAKSATDPAEIWPAILEKAYAKLHGSYGRICSGDPLHALQDMT 320 GFSTMRFDESLTDDKASDQLFSDLVHGIAAGYTVICSTPGRGPHDKDQELCEMYAQVGLVTGCAYTILEAKYIESKELRM 400 VKVRNVWGHSVEWSGNWGNDDTKWDANPDIAEECNFQKAADGMFWMSWKDARKYFNGGGVCFTHQAAYDYRMNCVFTEGV 480 PSAVLEIEVQSPTCFTFVISQDDKRCQVNASEYKPVMISIAEPVEGEMYKVVMNSSANGARPTSDKWTFLQARDVSLIHE 560 LDAGKYIVVPRIMPSDDPVEPVPYVLGMICSKEVGNGDVSVKFKRLDAGNRVFENFPKFEPELMEVEQPVQYQKRAPGEA 640 FPMTQMGEELM 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ........... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.20.1185 11 GETGEWR|EL 0.121 . LmxM.20.1185 23 QPTLSSK|PQ 0.070 . LmxM.20.1185 69 HYSADIK|AQ 0.062 . LmxM.20.1185 88 APQEYPK|ET 0.076 . LmxM.20.1185 112 PGSAHAR|SM 0.169 . LmxM.20.1185 129 PPSAIVK|PR 0.071 . LmxM.20.1185 131 SAIVKPR|TR 0.113 . LmxM.20.1185 133 IVKPRTR|HV 0.122 . LmxM.20.1185 136 PRTRHVK|SV 0.446 . LmxM.20.1185 140 HVKSVAR|WE 0.088 . LmxM.20.1185 149 AVGYDPR|DG 0.113 . LmxM.20.1185 181 EDASVFK|HG 0.075 . LmxM.20.1185 188 HGEPDFK|GE 0.061 . LmxM.20.1185 203 EPNLLYR|II 0.159 . LmxM.20.1185 208 YRIIDPK|TK 0.066 . LmxM.20.1185 210 IIDPKTK|TW 0.062 . LmxM.20.1185 231 VQFIFGK|HS 0.061 . LmxM.20.1185 234 IFGKHSK|LQ 0.060 . LmxM.20.1185 244 LENTTLR|QN 0.118 . LmxM.20.1185 256 QYVTFNK|NG 0.057 . LmxM.20.1185 261 NKNGWWR|SV 0.173 . LmxM.20.1185 275 LPVSGGK|LK 0.059 . LmxM.20.1185 277 VSGGKLK|YA 0.075 . LmxM.20.1185 280 GKLKYAK|SA 0.098 . LmxM.20.1185 295 WPAILEK|AY 0.070 . LmxM.20.1185 299 LEKAYAK|LH 0.069 . LmxM.20.1185 306 LHGSYGR|IC 0.095 . LmxM.20.1185 326 TGFSTMR|FD 0.096 . LmxM.20.1185 335 ESLTDDK|AS 0.061 . LmxM.20.1185 361 ICSTPGR|GP 0.120 . LmxM.20.1185 366 GRGPHDK|DQ 0.108 . LmxM.20.1185 391 YTILEAK|YI 0.078 . LmxM.20.1185 396 AKYIESK|EL 0.061 . LmxM.20.1185 399 IESKELR|MV 0.137 . LmxM.20.1185 402 KELRMVK|VR 0.103 . LmxM.20.1185 404 LRMVKVR|NV 0.165 . LmxM.20.1185 423 WGNDDTK|WD 0.060 . LmxM.20.1185 438 EECNFQK|AA 0.087 . LmxM.20.1185 449 MFWMSWK|DA 0.103 . LmxM.20.1185 452 MSWKDAR|KY 0.126 . LmxM.20.1185 453 SWKDARK|YF 0.109 . LmxM.20.1185 471 QAAYDYR|MN 0.103 . LmxM.20.1185 504 VISQDDK|RC 0.058 . LmxM.20.1185 505 ISQDDKR|CQ 0.127 . LmxM.20.1185 514 VNASEYK|PV 0.085 . LmxM.20.1185 530 VEGEMYK|VV 0.070 . LmxM.20.1185 541 SSANGAR|PT 0.144 . LmxM.20.1185 546 ARPTSDK|WT 0.073 . LmxM.20.1185 553 WTFLQAR|DV 0.160 . LmxM.20.1185 565 HELDAGK|YI 0.059 . LmxM.20.1185 571 KYIVVPR|IM 0.083 . LmxM.20.1185 592 LGMICSK|EV 0.088 . LmxM.20.1185 602 NGDVSVK|FK 0.059 . LmxM.20.1185 604 DVSVKFK|RL 0.103 . LmxM.20.1185 605 VSVKFKR|LD 0.161 . LmxM.20.1185 611 RLDAGNR|VF 0.075 . LmxM.20.1185 618 VFENFPK|FE 0.062 . LmxM.20.1185 634 QPVQYQK|RA 0.064 . LmxM.20.1185 635 PVQYQKR|AP 0.321 . ____________________________^_________________

  • Fasta :-

    >LmxM.20.1185 ATGTCGCACAACGGTGAAACGGGTGAGTGGCGAGAGCTCGATGAAGAGCAGCCGACGCTA TCCTCCAAGCCCCAGGACGCAACGATGAACACATATTCAACCCAGGAGCACGGTGCCCCT GCACACGAGGAGGCTTACGAGGGAGAGTGTGCCGAGCACTTTGCTCAGGAGTTCCACTGT CTCCAACATTACTCGGCGGACATCAAGGCCCAAGTAGTTCCGCAGCAGGCTTTCGAGGAG GAGGCTCCTCAGGAGTACCCGAAAGAGACCGACAATAACTATGACGCACCGCAGCACGCG CACGAAGTGGTGGGTCCTGGCAGCGCTCACGCCCGCTCGATGCCTGCGCCGCACGCTGCC GCTGCGCCGCCGAGCGCGATTGTGAAGCCGCGGACGCGCCACGTGAAGAGCGTCGCTCGC TGGGAGGCGGTGGGGTATGACCCGCGTGACGGGAGCGACGATGAGTTCGAGCAGTCGACG TGCATGGCACCGGTATACGAGGACGAGGGTGAGGAGGGCAACGAGGATGCGAGCGTGTTC AAGCACGGCGAGCCGGATTTCAAGGGGGAGATCATGTCGTGCTTCGACGAGCCGAACCTG CTGTACCGGATCATTGACCCGAAGACGAAGACGTGGGCGTTTTACAACGACAGCCTGCAG TACGAGATGCATGTACAGTTCATATTTGGCAAGCACTCGAAACTGCAGCCGCTGGAGAAC ACGACGTTGCGGCAGAACGAAGAGGGCCAATACGTGACGTTCAACAAAAATGGGTGGTGG CGCAGCGTGGTGGTGGACAGCTACCTGCCTGTGTCCGGCGGCAAGCTGAAGTACGCGAAG AGCGCGACGGACCCTGCGGAGATCTGGCCTGCGATCCTAGAGAAGGCGTACGCGAAGCTG CATGGCAGCTACGGGAGGATCTGCTCCGGCGACCCGCTGCACGCACTCCAGGACATGACC GGGTTCTCGACGATGCGCTTCGACGAGTCGCTGACGGACGACAAGGCGAGCGACCAGCTG TTCAGCGATCTTGTGCACGGGATTGCTGCAGGGTACACGGTGATCTGCAGCACGCCCGGG CGCGGGCCGCACGACAAGGACCAGGAGCTGTGCGAGATGTACGCGCAGGTGGGGCTTGTG ACCGGGTGCGCGTACACGATCCTGGAGGCGAAGTACATCGAGAGCAAGGAGCTGCGGATG GTGAAGGTACGCAACGTGTGGGGGCACAGCGTGGAGTGGAGCGGCAACTGGGGGAACGAC GACACGAAATGGGACGCGAACCCGGACATCGCGGAGGAGTGCAACTTCCAGAAGGCGGCG GATGGGATGTTCTGGATGTCGTGGAAGGACGCGCGGAAGTACTTCAACGGTGGTGGCGTG TGCTTCACGCACCAGGCGGCGTACGACTACCGCATGAACTGCGTGTTCACGGAAGGCGTG CCGTCCGCTGTGCTGGAGATCGAGGTGCAGTCGCCTACGTGCTTCACGTTTGTGATTTCG CAGGACGACAAGCGGTGCCAGGTGAACGCGTCGGAGTACAAGCCTGTGATGATCAGCATT GCGGAGCCCGTGGAGGGCGAGATGTACAAGGTCGTCATGAACTCCTCGGCGAACGGCGCG CGGCCGACGTCGGACAAGTGGACGTTTCTGCAGGCACGCGACGTCTCGCTGATCCACGAG CTGGACGCTGGGAAGTACATTGTCGTGCCGCGCATCATGCCTTCGGATGACCCGGTGGAG CCTGTACCGTACGTTCTGGGGATGATCTGCAGCAAGGAGGTCGGGAACGGCGACGTGAGC GTGAAGTTCAAGCGCCTGGACGCTGGCAACCGCGTGTTTGAGAACTTCCCGAAGTTCGAG CCGGAGCTGATGGAGGTGGAGCAGCCGGTCCAGTACCAGAAGCGCGCGCCGGGCGAGGCA TTCCCGATGACGCAGATGGGGGAGGAGCTGATGTAG
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  • Fasta :-

    MSHNGETGEWRELDEEQPTLSSKPQDATMNTYSTQEHGAPAHEEAYEGECAEHFAQEFHC LQHYSADIKAQVVPQQAFEEEAPQEYPKETDNNYDAPQHAHEVVGPGSAHARSMPAPHAA AAPPSAIVKPRTRHVKSVARWEAVGYDPRDGSDDEFEQSTCMAPVYEDEGEEGNEDASVF KHGEPDFKGEIMSCFDEPNLLYRIIDPKTKTWAFYNDSLQYEMHVQFIFGKHSKLQPLEN TTLRQNEEGQYVTFNKNGWWRSVVVDSYLPVSGGKLKYAKSATDPAEIWPAILEKAYAKL HGSYGRICSGDPLHALQDMTGFSTMRFDESLTDDKASDQLFSDLVHGIAAGYTVICSTPG RGPHDKDQELCEMYAQVGLVTGCAYTILEAKYIESKELRMVKVRNVWGHSVEWSGNWGND DTKWDANPDIAEECNFQKAADGMFWMSWKDARKYFNGGGVCFTHQAAYDYRMNCVFTEGV PSAVLEIEVQSPTCFTFVISQDDKRCQVNASEYKPVMISIAEPVEGEMYKVVMNSSANGA RPTSDKWTFLQARDVSLIHELDAGKYIVVPRIMPSDDPVEPVPYVLGMICSKEVGNGDVS VKFKRLDAGNRVFENFPKFEPELMEVEQPVQYQKRAPGEAFPMTQMGEELM

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.20.1185330 SRFDESLTDD0.995unspLmxM.20.1185330 SRFDESLTDD0.995unspLmxM.20.1185330 SRFDESLTDD0.995unspLmxM.20.1185447 SMFWMSWKDA0.997unspLmxM.20.1185544 SARPTSDKWT0.998unspLmxM.20.1185600 SNGDVSVKFK0.992unspLmxM.20.118521 SQPTLSSKPQ0.991unspLmxM.20.1185152 SPRDGSDDEF0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India