LmxM.20.1190 | cysteine peptidase, Clan CA, family C2, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.20.1190OTHER0.9971030.0027940.000104
No Results

  • Fasta :-

    >LmxM.20.1190 MTAVNGKVDEFDEGSVTQKKYGPNDYRYGEPVYKGDATPCFEDGLLFRIVEKNNNRWSFY NDTTHTQMNVQIVFGRNSSLRALENTEMVKLENGSYRATVTVYPMETELFVEGEVNGFTS NIRALPLTEDYLKDMARQDYEFIKQETATLYNAVDKNATTDDMVRKCVQSKIKFVDFAFP PEQKSLQIGSLMKLKVLAWERPGMFLSDENARQARLFRNGVHPSNIDEGDLGDSWLTGAM AALSEFPDKIRDIFRHPESVEQGQKERECGIYRVTLNKNGWWTSLIVDDYLPVAGGRPKF ARSKGDPAELWPSILQKAYAKVFGGYGFIVAGDPLHALQDMSGFPCSSFDNAFVESTINE TYELFAHLKNYSDLGYQLVFTTPTREAIMTARGAISCGSPVQAERAYERSSLLLGHTYSV IRVGYFVEHDLRLLQLRNPWSQSSSDWNGPWNKRDENWNKYTEVADYFHFDSSDDGTFFM EWTDVQDYFVSCGVCFIQSPTYDYRIRGTFFQNVPTTCLEISVTRPMLINIILSQEDKRG TNKSENAPIMISVTHGMGAMTPMRVDLNSGFDNDHPSPEYAFLQSRDVSMFYEFKPENSP YLVVPRAISQFAKLPFTVGLLCPYEIGKETSEVRVAFRALAPENRIFDNFQKFNCETVAT ETEFQAKGPKQFFPDIYVGTIIQTSDD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/909 Sequence name : 909 Sequence length : 687 VALUES OF COMPUTED PARAMETERS Coef20 : 3.157 CoefTot : -0.356 ChDiff : -23 ZoneTo : 8 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.600 1.335 0.059 0.614 MesoH : -0.348 0.164 -0.327 0.253 MuHd_075 : 15.703 5.902 3.007 1.745 MuHd_095 : 16.691 18.316 5.029 3.477 MuHd_100 : 16.986 13.676 3.800 2.766 MuHd_105 : 18.163 9.338 3.001 2.317 Hmax_075 : -4.287 1.400 -3.518 0.810 Hmax_095 : 6.300 13.000 0.304 4.060 Hmax_100 : 0.000 6.700 -2.111 2.180 Hmax_105 : 0.875 5.300 -2.418 2.170 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9760 0.0240 DFMC : 0.9602 0.0398
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 687 LmxM.20.1190 MTAVNGKVDEFDEGSVTQKKYGPNDYRYGEPVYKGDATPCFEDGLLFRIVEKNNNRWSFYNDTTHTQMNVQIVFGRNSSL 80 RALENTEMVKLENGSYRATVTVYPMETELFVEGEVNGFTSNIRALPLTEDYLKDMARQDYEFIKQETATLYNAVDKNATT 160 DDMVRKCVQSKIKFVDFAFPPEQKSLQIGSLMKLKVLAWERPGMFLSDENARQARLFRNGVHPSNIDEGDLGDSWLTGAM 240 AALSEFPDKIRDIFRHPESVEQGQKERECGIYRVTLNKNGWWTSLIVDDYLPVAGGRPKFARSKGDPAELWPSILQKAYA 320 KVFGGYGFIVAGDPLHALQDMSGFPCSSFDNAFVESTINETYELFAHLKNYSDLGYQLVFTTPTREAIMTARGAISCGSP 400 VQAERAYERSSLLLGHTYSVIRVGYFVEHDLRLLQLRNPWSQSSSDWNGPWNKRDENWNKYTEVADYFHFDSSDDGTFFM 480 EWTDVQDYFVSCGVCFIQSPTYDYRIRGTFFQNVPTTCLEISVTRPMLINIILSQEDKRGTNKSENAPIMISVTHGMGAM 560 TPMRVDLNSGFDNDHPSPEYAFLQSRDVSMFYEFKPENSPYLVVPRAISQFAKLPFTVGLLCPYEIGKETSEVRVAFRAL 640 APENRIFDNFQKFNCETVATETEFQAKGPKQFFPDIYVGTIIQTSDD 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.20.1190 7 MTAVNGK|VD 0.067 . LmxM.20.1190 19 EGSVTQK|KY 0.079 . LmxM.20.1190 20 GSVTQKK|YG 0.094 . LmxM.20.1190 27 YGPNDYR|YG 0.098 . LmxM.20.1190 34 YGEPVYK|GD 0.058 . LmxM.20.1190 48 EDGLLFR|IV 0.128 . LmxM.20.1190 52 LFRIVEK|NN 0.060 . LmxM.20.1190 56 VEKNNNR|WS 0.082 . LmxM.20.1190 76 VQIVFGR|NS 0.077 . LmxM.20.1190 81 GRNSSLR|AL 0.172 . LmxM.20.1190 90 ENTEMVK|LE 0.057 . LmxM.20.1190 97 LENGSYR|AT 0.172 . LmxM.20.1190 123 GFTSNIR|AL 0.076 . LmxM.20.1190 133 LTEDYLK|DM 0.062 . LmxM.20.1190 137 YLKDMAR|QD 0.102 . LmxM.20.1190 144 QDYEFIK|QE 0.069 . LmxM.20.1190 156 LYNAVDK|NA 0.073 . LmxM.20.1190 165 TTDDMVR|KC 0.072 . LmxM.20.1190 166 TDDMVRK|CV 0.131 . LmxM.20.1190 171 RKCVQSK|IK 0.067 . LmxM.20.1190 173 CVQSKIK|FV 0.103 . LmxM.20.1190 184 AFPPEQK|SL 0.073 . LmxM.20.1190 193 QIGSLMK|LK 0.053 . LmxM.20.1190 195 GSLMKLK|VL 0.071 . LmxM.20.1190 201 KVLAWER|PG 0.062 . LmxM.20.1190 212 LSDENAR|QA 0.097 . LmxM.20.1190 215 ENARQAR|LF 0.393 . LmxM.20.1190 218 RQARLFR|NG 0.150 . LmxM.20.1190 249 LSEFPDK|IR 0.069 . LmxM.20.1190 251 EFPDKIR|DI 0.113 . LmxM.20.1190 255 KIRDIFR|HP 0.129 . LmxM.20.1190 265 SVEQGQK|ER 0.058 . LmxM.20.1190 267 EQGQKER|EC 0.119 . LmxM.20.1190 273 RECGIYR|VT 0.080 . LmxM.20.1190 278 YRVTLNK|NG 0.056 . LmxM.20.1190 297 LPVAGGR|PK 0.079 . LmxM.20.1190 299 VAGGRPK|FA 0.081 . LmxM.20.1190 302 GRPKFAR|SK 0.289 . LmxM.20.1190 304 PKFARSK|GD 0.067 . LmxM.20.1190 317 WPSILQK|AY 0.099 . LmxM.20.1190 321 LQKAYAK|VF 0.076 . LmxM.20.1190 369 ELFAHLK|NY 0.075 . LmxM.20.1190 385 VFTTPTR|EA 0.077 . LmxM.20.1190 392 EAIMTAR|GA 0.122 . LmxM.20.1190 405 SPVQAER|AY 0.092 . LmxM.20.1190 409 AERAYER|SS 0.119 . LmxM.20.1190 422 HTYSVIR|VG 0.088 . LmxM.20.1190 432 FVEHDLR|LL 0.068 . LmxM.20.1190 437 LRLLQLR|NP 0.079 . LmxM.20.1190 453 WNGPWNK|RD 0.061 . LmxM.20.1190 454 NGPWNKR|DE 0.156 . LmxM.20.1190 460 RDENWNK|YT 0.082 . LmxM.20.1190 505 SPTYDYR|IR 0.101 . LmxM.20.1190 507 TYDYRIR|GT 0.095 . LmxM.20.1190 525 LEISVTR|PM 0.074 . LmxM.20.1190 538 ILSQEDK|RG 0.060 . LmxM.20.1190 539 LSQEDKR|GT 0.302 . LmxM.20.1190 543 DKRGTNK|SE 0.077 . LmxM.20.1190 564 GAMTPMR|VD 0.082 . LmxM.20.1190 586 YAFLQSR|DV 0.139 . LmxM.20.1190 595 SMFYEFK|PE 0.057 . LmxM.20.1190 606 PYLVVPR|AI 0.105 . LmxM.20.1190 613 AISQFAK|LP 0.078 . LmxM.20.1190 628 CPYEIGK|ET 0.075 . LmxM.20.1190 634 KETSEVR|VA 0.090 . LmxM.20.1190 638 EVRVAFR|AL 0.111 . LmxM.20.1190 645 ALAPENR|IF 0.089 . LmxM.20.1190 652 IFDNFQK|FN 0.070 . LmxM.20.1190 667 ETEFQAK|GP 0.073 . LmxM.20.1190 670 FQAKGPK|QF 0.066 . ____________________________^_________________

  • Fasta :-

    >LmxM.20.1190 ATGACGGCCGTGAACGGAAAGGTAGACGAGTTCGATGAGGGCTCCGTCACACAGAAGAAG TACGGCCCCAACGACTACCGGTACGGCGAGCCGGTGTACAAGGGCGACGCAACGCCGTGC TTCGAAGACGGCCTTCTCTTCCGCATTGTGGAGAAAAACAACAACCGCTGGTCCTTTTAC AATGATACCACCCACACGCAGATGAATGTGCAGATTGTGTTTGGCCGCAACTCTTCCCTG CGTGCGCTGGAGAACACAGAGATGGTGAAGCTGGAGAACGGCTCCTACCGCGCTACTGTA ACGGTGTACCCGATGGAGACAGAGTTGTTTGTGGAGGGTGAGGTAAACGGCTTCACTAGC AATATTCGTGCTCTGCCGCTAACGGAGGATTACCTCAAGGACATGGCTCGTCAGGATTAC GAGTTCATCAAACAAGAGACGGCGACCCTGTACAACGCTGTGGACAAGAACGCTACGACT GATGACATGGTTCGCAAGTGCGTGCAGAGCAAAATCAAGTTTGTCGACTTTGCTTTCCCC CCGGAGCAGAAGTCGCTGCAGATCGGCTCTCTCATGAAGCTGAAGGTGCTGGCGTGGGAG CGGCCGGGTATGTTCCTTTCCGACGAGAACGCCCGGCAGGCGCGCCTGTTTCGCAACGGC GTGCACCCATCCAACATCGACGAGGGTGATTTGGGTGACTCGTGGCTGACGGGGGCGATG GCAGCGTTGTCTGAGTTCCCGGACAAGATCCGTGATATCTTCCGCCACCCCGAGAGCGTG GAGCAGGGGCAGAAGGAGCGCGAGTGCGGCATCTACCGTGTGACGTTGAACAAGAACGGC TGGTGGACGAGTTTGATTGTCGACGACTACCTTCCGGTGGCTGGCGGCCGCCCAAAATTT GCCCGGTCCAAGGGCGATCCGGCCGAGTTGTGGCCCTCCATTCTCCAGAAGGCGTACGCG AAGGTCTTCGGCGGCTACGGATTCATCGTTGCTGGAGACCCGCTGCACGCGCTGCAGGAC ATGTCCGGATTCCCGTGCTCCTCCTTTGATAACGCGTTCGTGGAGAGCACTATCAACGAG ACGTATGAGCTGTTCGCGCACCTCAAGAACTACAGTGACCTGGGCTACCAGCTTGTGTTC ACCACGCCGACCCGCGAAGCCATCATGACGGCTCGCGGCGCCATCAGCTGTGGCTCCCCG GTGCAGGCGGAGCGCGCGTACGAGAGATCCAGCCTGCTGCTGGGCCACACCTACTCCGTG ATTCGCGTGGGCTACTTCGTGGAGCACGACCTGCGCCTTCTGCAGCTGCGGAACCCGTGG TCGCAGTCCTCCTCGGACTGGAATGGTCCGTGGAACAAGCGCGACGAGAACTGGAACAAG TACACGGAGGTGGCAGACTACTTCCACTTTGACAGCAGCGATGACGGCACCTTCTTCATG GAGTGGACCGACGTGCAGGACTACTTTGTCAGCTGCGGCGTGTGCTTCATTCAGAGCCCC ACGTACGACTACCGCATCCGCGGCACCTTCTTCCAGAACGTGCCAACGACATGCCTGGAG ATCTCCGTTACACGTCCGATGCTGATCAACATTATTCTCTCGCAGGAAGACAAGCGTGGC ACCAACAAGAGCGAGAACGCGCCGATCATGATTAGTGTGACGCACGGCATGGGGGCGATG ACGCCGATGCGCGTGGACTTGAACAGCGGCTTCGACAACGACCACCCGTCGCCTGAGTAC GCATTCCTGCAGAGTCGTGACGTGAGCATGTTCTACGAATTCAAGCCGGAAAACTCGCCG TACCTTGTGGTGCCGCGTGCCATCAGCCAGTTCGCCAAGCTTCCCTTCACGGTAGGCCTA CTGTGCCCGTACGAAATCGGCAAGGAGACGAGCGAGGTCCGCGTGGCCTTCCGCGCCCTC GCCCCGGAGAACCGCATCTTCGACAACTTCCAGAAGTTCAACTGCGAGACGGTGGCAACA GAGACGGAGTTTCAGGCAAAGGGCCCGAAGCAGTTCTTCCCTGACATCTACGTGGGTACG ATCATCCAGACGTCTGACGACTAA
  • Download Fasta

  • Fasta :-

    MTAVNGKVDEFDEGSVTQKKYGPNDYRYGEPVYKGDATPCFEDGLLFRIVEKNNNRWSFY NDTTHTQMNVQIVFGRNSSLRALENTEMVKLENGSYRATVTVYPMETELFVEGEVNGFTS NIRALPLTEDYLKDMARQDYEFIKQETATLYNAVDKNATTDDMVRKCVQSKIKFVDFAFP PEQKSLQIGSLMKLKVLAWERPGMFLSDENARQARLFRNGVHPSNIDEGDLGDSWLTGAM AALSEFPDKIRDIFRHPESVEQGQKERECGIYRVTLNKNGWWTSLIVDDYLPVAGGRPKF ARSKGDPAELWPSILQKAYAKVFGGYGFIVAGDPLHALQDMSGFPCSSFDNAFVESTINE TYELFAHLKNYSDLGYQLVFTTPTREAIMTARGAISCGSPVQAERAYERSSLLLGHTYSV IRVGYFVEHDLRLLQLRNPWSQSSSDWNGPWNKRDENWNKYTEVADYFHFDSSDDGTFFM EWTDVQDYFVSCGVCFIQSPTYDYRIRGTFFQNVPTTCLEISVTRPMLINIILSQEDKRG TNKSENAPIMISVTHGMGAMTPMRVDLNSGFDNDHPSPEYAFLQSRDVSMFYEFKPENSP YLVVPRAISQFAKLPFTVGLLCPYEIGKETSEVRVAFRALAPENRIFDNFQKFNCETVAT ETEFQAKGPKQFFPDIYVGTIIQTSDD

  • title: catalytic site
  • coordinates: S234,H416,N438
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.20.1190569 SVDLNSGFDN0.994unspLmxM.20.1190569 SVDLNSGFDN0.994unspLmxM.20.1190569 SVDLNSGFDN0.994unspLmxM.20.1190577 SNDHPSPEYA0.99unspLmxM.20.1190303 SKFARSKGDP0.996unspLmxM.20.1190534 SNIILSQEDK0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India