LmxM.20.1210 | cysteine peptidase, Clan CA, family C2, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.20.1210OTHER0.9676830.0018710.030447
No Results

  • Fasta :-

    >LmxM.20.1210 MAAVAEHTHHLLRMFRHPRSQQQGAAEQLLGAYRVTLNVRGWWRSVVVDDYFPITEGGSY INCAQSRRDVRELWVPLLEKVYAKMRGGYSNIITGDPLMALRDFTGWPCARYDIAHFNDI SVVSSSFASRLMGYDRYGFQVILHTAPRFDLDGVIRQTDVGISRAEVSLPSAAGASGRGA CADAGTVHGLLAGMVYPVMRILRFNANSFGAELTLLQVRNPWGDAAGWKGKWRCGSPLWE QCPKVATACHMQECLHRDGSGGMTPSKSDLRDRSAAPAAPQTATTASGATTTACACRRNQ YIWVEWSEVYQHFSGCGVMFRLPLHHDYRVKGVFDTTCPSVCVRVSVAARTFMGAMLSMS DTVGDRSLAATDTEDASTYPPIMLTLAREEAGVLQVVRNSQTDPDNPTTRFTFMQALDAS LFYPLTPEDSPYWLIPRVLAPQLPNAAAAADGGANVPAPHPPRLPYVLGLFQEKPAGENG WRAEFYHLPPTSGAFRNRMSFSLGSDVQSVATIFQAKAPHAAFPKTYMHTEVSEREATPV DEFGHVAQA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/365 Sequence name : 365 Sequence length : 549 VALUES OF COMPUTED PARAMETERS Coef20 : 4.133 CoefTot : -0.846 ChDiff : 0 ZoneTo : 48 KR : 6 DE : 2 CleavSite : 46 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.971 1.424 0.134 0.499 MesoH : -0.356 0.443 -0.259 0.226 MuHd_075 : 34.241 23.762 9.815 8.219 MuHd_095 : 32.276 20.760 9.496 7.279 MuHd_100 : 40.969 24.300 11.359 8.198 MuHd_105 : 47.001 25.351 12.000 9.689 Hmax_075 : 13.700 7.350 -0.553 5.470 Hmax_095 : 10.150 6.200 0.389 3.981 Hmax_100 : 18.100 17.600 2.714 5.710 Hmax_105 : 15.750 8.200 2.127 5.190 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4187 0.5813 DFMC : 0.5031 0.4969
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 549 LmxM.20.1210 MAAVAEHTHHLLRMFRHPRSQQQGAAEQLLGAYRVTLNVRGWWRSVVVDDYFPITEGGSYINCAQSRRDVRELWVPLLEK 80 VYAKMRGGYSNIITGDPLMALRDFTGWPCARYDIAHFNDISVVSSSFASRLMGYDRYGFQVILHTAPRFDLDGVIRQTDV 160 GISRAEVSLPSAAGASGRGACADAGTVHGLLAGMVYPVMRILRFNANSFGAELTLLQVRNPWGDAAGWKGKWRCGSPLWE 240 QCPKVATACHMQECLHRDGSGGMTPSKSDLRDRSAAPAAPQTATTASGATTTACACRRNQYIWVEWSEVYQHFSGCGVMF 320 RLPLHHDYRVKGVFDTTCPSVCVRVSVAARTFMGAMLSMSDTVGDRSLAATDTEDASTYPPIMLTLAREEAGVLQVVRNS 400 QTDPDNPTTRFTFMQALDASLFYPLTPEDSPYWLIPRVLAPQLPNAAAAADGGANVPAPHPPRLPYVLGLFQEKPAGENG 480 WRAEFYHLPPTSGAFRNRMSFSLGSDVQSVATIFQAKAPHAAFPKTYMHTEVSEREATPVDEFGHVAQA 560 ..................P............................................................. 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ..................................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.20.1210 13 HTHHLLR|MF 0.099 . LmxM.20.1210 16 HLLRMFR|HP 0.229 . LmxM.20.1210 19 RMFRHPR|SQ 0.536 *ProP* LmxM.20.1210 34 QLLGAYR|VT 0.081 . LmxM.20.1210 40 RVTLNVR|GW 0.084 . LmxM.20.1210 44 NVRGWWR|SV 0.140 . LmxM.20.1210 67 INCAQSR|RD 0.086 . LmxM.20.1210 68 NCAQSRR|DV 0.308 . LmxM.20.1210 71 QSRRDVR|EL 0.226 . LmxM.20.1210 80 WVPLLEK|VY 0.057 . LmxM.20.1210 84 LEKVYAK|MR 0.073 . LmxM.20.1210 86 KVYAKMR|GG 0.092 . LmxM.20.1210 102 DPLMALR|DF 0.089 . LmxM.20.1210 111 TGWPCAR|YD 0.116 . LmxM.20.1210 130 SSSFASR|LM 0.119 . LmxM.20.1210 136 RLMGYDR|YG 0.115 . LmxM.20.1210 148 ILHTAPR|FD 0.105 . LmxM.20.1210 156 DLDGVIR|QT 0.100 . LmxM.20.1210 164 TDVGISR|AE 0.074 . LmxM.20.1210 178 AAGASGR|GA 0.163 . LmxM.20.1210 200 MVYPVMR|IL 0.098 . LmxM.20.1210 203 PVMRILR|FN 0.265 . LmxM.20.1210 219 LTLLQVR|NP 0.066 . LmxM.20.1210 229 GDAAGWK|GK 0.071 . LmxM.20.1210 231 AAGWKGK|WR 0.075 . LmxM.20.1210 233 GWKGKWR|CG 0.113 . LmxM.20.1210 244 LWEQCPK|VA 0.075 . LmxM.20.1210 257 MQECLHR|DG 0.129 . LmxM.20.1210 267 GGMTPSK|SD 0.071 . LmxM.20.1210 271 PSKSDLR|DR 0.105 . LmxM.20.1210 273 KSDLRDR|SA 0.202 . LmxM.20.1210 297 TTACACR|RN 0.085 . LmxM.20.1210 298 TACACRR|NQ 0.134 . LmxM.20.1210 321 GCGVMFR|LP 0.072 . LmxM.20.1210 329 PLHHDYR|VK 0.102 . LmxM.20.1210 331 HHDYRVK|GV 0.086 . LmxM.20.1210 344 CPSVCVR|VS 0.114 . LmxM.20.1210 350 RVSVAAR|TF 0.135 . LmxM.20.1210 366 SDTVGDR|SL 0.101 . LmxM.20.1210 388 IMLTLAR|EE 0.089 . LmxM.20.1210 398 GVLQVVR|NS 0.077 . LmxM.20.1210 410 PDNPTTR|FT 0.123 . LmxM.20.1210 437 PYWLIPR|VL 0.086 . LmxM.20.1210 463 PAPHPPR|LP 0.074 . LmxM.20.1210 474 LGLFQEK|PA 0.072 . LmxM.20.1210 482 AGENGWR|AE 0.081 . LmxM.20.1210 496 PTSGAFR|NR 0.075 . LmxM.20.1210 498 SGAFRNR|MS 0.119 . LmxM.20.1210 517 ATIFQAK|AP 0.077 . LmxM.20.1210 525 PHAAFPK|TY 0.073 . LmxM.20.1210 535 HTEVSER|EA 0.105 . ____________________________^_________________

  • Fasta :-

    >LmxM.20.1210 ATGGCGGCGGTCGCGGAGCACACGCACCACCTCCTCCGCATGTTCCGCCACCCTCGCAGC CAGCAACAAGGGGCCGCCGAACAGCTCCTCGGCGCGTATCGCGTGACGCTAAACGTGCGA GGGTGGTGGCGCAGCGTCGTGGTCGACGACTACTTCCCCATCACGGAGGGCGGCAGCTAC ATCAATTGCGCGCAGAGTCGCCGCGATGTGCGGGAGCTGTGGGTGCCGCTGCTGGAGAAG GTGTACGCTAAGATGCGTGGCGGCTACTCTAACATCATCACTGGCGACCCGCTCATGGCT CTGCGTGACTTCACTGGTTGGCCGTGCGCCCGCTACGACATCGCACACTTCAACGACATT TCTGTAGTGTCGTCCAGCTTCGCGTCGCGACTCATGGGGTACGACCGGTACGGGTTTCAG GTCATCCTGCACACGGCCCCCCGCTTCGACCTTGATGGTGTGATACGCCAGACCGACGTA GGTATCTCACGAGCAGAGGTGTCTCTGCCTTCAGCGGCGGGGGCTTCCGGACGCGGCGCG TGCGCTGATGCAGGCACGGTTCACGGGCTCCTTGCTGGGATGGTGTACCCCGTCATGCGC ATCTTGCGGTTTAACGCCAATTCGTTTGGTGCCGAGCTGACGCTGCTCCAAGTGCGGAAT CCGTGGGGAGACGCAGCGGGGTGGAAAGGAAAGTGGCGGTGTGGTAGTCCCCTCTGGGAG CAGTGCCCGAAGGTTGCCACGGCATGTCACATGCAGGAGTGCCTACATCGAGACGGCAGT GGCGGCATGACGCCGTCAAAGAGCGATCTCCGAGACAGATCAGCGGCACCGGCGGCGCCG CAGACAGCCACCACGGCTTCTGGCGCTACCACTACCGCGTGCGCCTGTCGCCGCAACCAG TACATCTGGGTAGAGTGGTCAGAGGTGTACCAGCACTTCTCCGGGTGTGGCGTCATGTTC CGGCTCCCCCTTCACCACGACTATCGCGTAAAAGGAGTGTTCGACACCACCTGCCCATCT GTGTGCGTGCGGGTGTCGGTCGCGGCGCGCACCTTCATGGGTGCCATGCTCTCTATGAGC GACACAGTCGGGGACAGATCCTTGGCGGCGACAGACACGGAGGACGCCAGCACATACCCG CCCATCATGCTCACGCTGGCGCGAGAGGAAGCTGGCGTGCTCCAGGTCGTGCGCAACTCG CAGACCGACCCTGACAATCCGACAACGCGCTTTACCTTTATGCAAGCGCTCGACGCGAGT CTCTTCTACCCACTGACACCGGAGGACTCGCCATACTGGCTGATCCCTCGGGTCCTCGCA CCCCAGCTGCCCAACGCTGCTGCCGCTGCTGATGGCGGCGCGAATGTCCCGGCACCGCAT CCTCCACGGCTGCCGTATGTGCTTGGTCTCTTCCAAGAAAAACCAGCAGGAGAAAACGGG TGGCGAGCCGAATTCTACCATCTGCCGCCGACATCCGGAGCCTTTCGGAACCGCATGTCG TTTTCTCTGGGCAGCGACGTGCAGTCGGTGGCGACCATCTTCCAGGCCAAGGCACCTCAC GCGGCCTTCCCAAAAACTTACATGCACACGGAAGTGTCAGAGCGGGAAGCAACACCGGTG GACGAGTTTGGTCATGTTGCTCAGGCGTGA
  • Download Fasta

  • Fasta :-

    MAAVAEHTHHLLRMFRHPRSQQQGAAEQLLGAYRVTLNVRGWWRSVVVDDYFPITEGGSY INCAQSRRDVRELWVPLLEKVYAKMRGGYSNIITGDPLMALRDFTGWPCARYDIAHFNDI SVVSSSFASRLMGYDRYGFQVILHTAPRFDLDGVIRQTDVGISRAEVSLPSAAGASGRGA CADAGTVHGLLAGMVYPVMRILRFNANSFGAELTLLQVRNPWGDAAGWKGKWRCGSPLWE QCPKVATACHMQECLHRDGSGGMTPSKSDLRDRSAAPAAPQTATTASGATTTACACRRNQ YIWVEWSEVYQHFSGCGVMFRLPLHHDYRVKGVFDTTCPSVCVRVSVAARTFMGAMLSMS DTVGDRSLAATDTEDASTYPPIMLTLAREEAGVLQVVRNSQTDPDNPTTRFTFMQALDAS LFYPLTPEDSPYWLIPRVLAPQLPNAAAAADGGANVPAPHPPRLPYVLGLFQEKPAGENG WRAEFYHLPPTSGAFRNRMSFSLGSDVQSVATIFQAKAPHAAFPKTYMHTEVSEREATPV DEFGHVAQA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.20.1210400 SVVRNSQTDP0.997unspLmxM.20.1210400 SVVRNSQTDP0.997unspLmxM.20.1210400 SVVRNSQTDP0.997unspLmxM.20.1210533 SHTEVSEREA0.994unspLmxM.20.1210538 TEREATPVDE0.995unspLmxM.20.121066 SNCAQSRRDV0.996unspLmxM.20.1210358 SGAMLSMSDT0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India