LmxM.20.1550 | amidohydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.20.1550OTHER0.9933140.0049260.001760
No Results

  • Fasta :-

    >LmxM.20.1550 MSFVQTLLTAVQPEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSV VADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVL CQMRDRIRGTVRFVFQHAEEVIPSGAKQLVGLGVLDGVSMIFGLHVDVMRPSGSIWCRVG TIMGACNDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALRAPVLSITT FEGGRGSYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPNI VTYNDSKAYEVAKAAAVRLVGEGNYHELSTPLLGVADFSEYQAVVPGCLCWLGVGNSALG DANNHNYSSKFRMNEAGMELGVKHHVLIIASLMMQTEGSKE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/694 Sequence name : 694 Sequence length : 401 VALUES OF COMPUTED PARAMETERS Coef20 : 4.508 CoefTot : -0.066 ChDiff : -10 ZoneTo : 13 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.406 1.665 0.307 0.669 MesoH : -0.069 0.771 -0.140 0.338 MuHd_075 : 9.286 9.413 3.328 1.133 MuHd_095 : 15.379 24.710 6.042 6.135 MuHd_100 : 10.858 19.323 3.394 5.293 MuHd_105 : 3.228 11.530 0.254 3.466 Hmax_075 : 8.517 9.217 -0.061 3.540 Hmax_095 : 19.000 22.100 2.961 7.510 Hmax_100 : 18.700 21.200 2.670 6.950 Hmax_105 : 10.700 15.487 0.679 5.434 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8447 0.1553 DFMC : 0.9287 0.0713
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 401 LmxM.20.1550 MSFVQTLLTAVQPEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSVVADLRGGAGEGPMYALRADM 80 DALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVLCQMRDRIRGTVRFVFQHAEEVIPSGAKQLVGLGVLDGVSM 160 IFGLHVDVMRPSGSIWCRVGTIMGACNDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALRAPVLSITT 240 FEGGRGSYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPNIVTYNDSKAYEVAKAAAVRLV 320 GEGNYHELSTPLLGVADFSEYQAVVPGCLCWLGVGNSALGDANNHNYSSKFRMNEAGMELGVKHHVLIIASLMMQTEGSK 400 E 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 . 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.20.1550 19 PEVVQWR|RH 0.088 . LmxM.20.1550 20 EVVQWRR|HI 0.146 . LmxM.20.1550 53 PAPLDIR|RL 0.065 . LmxM.20.1550 54 APLDIRR|LT 0.104 . LmxM.20.1550 65 SVVADLR|GG 0.098 . LmxM.20.1550 77 GPMYALR|AD 0.116 . LmxM.20.1550 96 GEPFSSK|RP 0.067 . LmxM.20.1550 97 EPFSSKR|PG 0.139 . LmxM.20.1550 118 MLLGAVK|VL 0.060 . LmxM.20.1550 124 KVLCQMR|DR 0.097 . LmxM.20.1550 126 LCQMRDR|IR 0.107 . LmxM.20.1550 128 QMRDRIR|GT 0.097 . LmxM.20.1550 132 RIRGTVR|FV 0.174 . LmxM.20.1550 147 VIPSGAK|QL 0.056 . LmxM.20.1550 170 LHVDVMR|PS 0.103 . LmxM.20.1550 178 SGSIWCR|VG 0.101 . LmxM.20.1550 194 DFDIVIR|GA 0.122 . LmxM.20.1550 226 LQSVVSR|RV 0.188 . LmxM.20.1550 227 QSVVSRR|VS 0.106 . LmxM.20.1550 232 RRVSALR|AP 0.090 . LmxM.20.1550 245 TTFEGGR|GS 0.090 . LmxM.20.1550 256 VIPDTVR|MR 0.077 . LmxM.20.1550 258 PDTVRMR|GT 0.091 . LmxM.20.1550 262 RMRGTLR|CL 0.090 . LmxM.20.1550 266 TLRCLDR|DT 0.153 . LmxM.20.1550 271 DRDTQAR|VP 0.099 . LmxM.20.1550 285 IIAGITK|AH 0.076 . LmxM.20.1550 307 VTYNDSK|AY 0.066 . LmxM.20.1550 313 KAYEVAK|AA 0.083 . LmxM.20.1550 318 AKAAAVR|LV 0.180 . LmxM.20.1550 370 NHNYSSK|FR 0.082 . LmxM.20.1550 372 NYSSKFR|MN 0.168 . LmxM.20.1550 383 GMELGVK|HH 0.058 . LmxM.20.1550 400 MQTEGSK|E- 0.057 . ____________________________^_________________

  • Fasta :-

    >LmxM.20.1550 ATGTCGTTCGTGCAGACCCTTCTCACAGCTGTGCAGCCTGAGGTGGTGCAGTGGCGCCGC CACATCCACGAGTATCCATATGTTGCGTATGAGGAGCAGCCCACCGCCGACTACGTGGCG GACGTCCTCAGCAGCATGCCCGCACCGCTGGACATTCGCCGGCTGACGCCGAACAGCGTC GTGGCGGACCTGCGGGGTGGCGCTGGCGAGGGCCCCATGTACGCCCTGCGCGCCGACATG GATGCACTGCCGCTGCAGGAGGAGAGTGGTGAGCCCTTCAGCTCGAAGCGGCCAGGCGTG ATGCACGCGTGTGGCCACGATGCCCACACGGCGATGCTGCTTGGGGCGGTGAAGGTGCTG TGTCAGATGCGCGACCGCATCCGTGGCACTGTTCGCTTTGTTTTCCAGCACGCCGAAGAG GTGATCCCGAGTGGTGCGAAGCAGCTGGTGGGCCTTGGTGTGTTGGATGGCGTGTCCATG ATCTTTGGGCTACACGTCGACGTCATGCGTCCCTCTGGGTCAATCTGGTGCCGTGTAGGA ACGATCATGGGTGCGTGCAACGACTTTGACATTGTGATCCGCGGTGCTGGCGGCCATGCC TCGCAGCCGGAGCTGTGTGTCGACCCCATTCTCATTGCCTCCGAGGTCGTGGCAAACCTC CAGTCCGTTGTATCACGCCGCGTGAGCGCGCTGAGGGCTCCTGTACTGAGCATTACCACC TTCGAGGGCGGGAGAGGAAGCTACAACGTGATCCCGGACACCGTGCGCATGCGCGGCACA CTGCGGTGCCTCGACCGCGACACTCAGGCTCGGGTGCCCTCTCTGATGGAGGAGATCATC GCCGGCATCACAAAGGCGCACGGTGCCCAGTACGAGCTGAGCTGGCTGGAGCCCAACATC GTGACGTACAACGACTCGAAGGCGTACGAGGTAGCCAAGGCGGCGGCGGTCCGTCTTGTC GGTGAGGGCAACTATCATGAGCTCTCCACTCCTCTTCTGGGAGTCGCTGATTTTTCGGAA TATCAAGCGGTGGTGCCCGGCTGTCTGTGCTGGCTGGGCGTGGGAAACAGCGCTTTGGGA GACGCCAACAACCACAACTACAGCTCAAAGTTCCGTATGAACGAGGCAGGGATGGAGCTT GGTGTAAAGCACCATGTGCTCATAATAGCATCGCTCATGATGCAGACAGAAGGCTCGAAG GAGTAA
  • Download Fasta

  • Fasta :-

    MSFVQTLLTAVQPEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSV VADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVL CQMRDRIRGTVRFVFQHAEEVIPSGAKQLVGLGVLDGVSMIFGLHVDVMRPSGSIWCRVG TIMGACNDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALRAPVLSITT FEGGRGSYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPNI VTYNDSKAYEVAKAAAVRLVGEGNYHELSTPLLGVADFSEYQAVVPGCLCWLGVGNSALG DANNHNYSSKFRMNEAGMELGVKHHVLIIASLMMQTEGSKE

  • title: metal binding site
  • coordinates: C104,H106,E139,E140,H165,H365
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.20.1550229 SSRRVSALRA0.996unspLmxM.20.1550229 SSRRVSALRA0.996unspLmxM.20.1550229 SSRRVSALRA0.996unspLmxM.20.155056 TIRRLTPNSV0.99unspLmxM.20.155094 SGEPFSSKRP0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India