LmxM.20.1560 | amidohydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.20.1560OTHER0.9989380.0005750.000487
No Results

  • Fasta :-

    >LmxM.20.1560 MTSPISALIQVVQPEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNS VVADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKV LCQMRDRIRGTVRFVFQHAEEVVPSGAKQLVGLGVLDGVSMIFGLHVAAEYPVGTISTRQ GTLCGACNDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALRAPVLSIT TFEGGRGSYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPN IVTYNDPKAYEVVKSVAEEMLGKDAFVVKEEPMFGVEDFSEYQAVIPGCYALLGVKPCGD GKAPLAHNCMFRVNEDAFAHGIGLHVNAIRRLLIDS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/273 Sequence name : 273 Sequence length : 396 VALUES OF COMPUTED PARAMETERS Coef20 : 4.139 CoefTot : -0.329 ChDiff : -12 ZoneTo : 14 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.271 1.665 0.153 0.669 MesoH : -0.044 0.698 -0.134 0.336 MuHd_075 : 14.935 14.914 4.548 2.735 MuHd_095 : 19.274 23.904 6.399 6.202 MuHd_100 : 14.861 20.006 5.227 5.098 MuHd_105 : 6.505 13.043 3.045 3.374 Hmax_075 : 15.050 17.100 2.949 4.790 Hmax_095 : 17.400 21.500 3.692 6.860 Hmax_100 : 18.800 22.400 4.060 6.690 Hmax_105 : 15.400 18.550 3.712 5.565 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8594 0.1406 DFMC : 0.9276 0.0724
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 396 LmxM.20.1560 MTSPISALIQVVQPEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSVVADLRGGAGEGPMYALRAD 80 MDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVLCQMRDRIRGTVRFVFQHAEEVVPSGAKQLVGLGVLDGVS 160 MIFGLHVAAEYPVGTISTRQGTLCGACNDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALRAPVLSIT 240 TFEGGRGSYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPNIVTYNDPKAYEVVKSVAEEM 320 LGKDAFVVKEEPMFGVEDFSEYQAVIPGCYALLGVKPCGDGKAPLAHNCMFRVNEDAFAHGIGLHVNAIRRLLIDS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.20.1560 20 PEVVQWR|RH 0.086 . LmxM.20.1560 21 EVVQWRR|HI 0.146 . LmxM.20.1560 54 PAPLDIR|RL 0.065 . LmxM.20.1560 55 APLDIRR|LT 0.104 . LmxM.20.1560 66 SVVADLR|GG 0.098 . LmxM.20.1560 78 GPMYALR|AD 0.116 . LmxM.20.1560 97 GEPFSSK|RP 0.067 . LmxM.20.1560 98 EPFSSKR|PG 0.139 . LmxM.20.1560 119 MLLGAVK|VL 0.060 . LmxM.20.1560 125 KVLCQMR|DR 0.097 . LmxM.20.1560 127 LCQMRDR|IR 0.107 . LmxM.20.1560 129 QMRDRIR|GT 0.097 . LmxM.20.1560 133 RIRGTVR|FV 0.174 . LmxM.20.1560 148 VVPSGAK|QL 0.055 . LmxM.20.1560 179 VGTISTR|QG 0.074 . LmxM.20.1560 195 DFDIVIR|GA 0.122 . LmxM.20.1560 227 LQSVVSR|RV 0.188 . LmxM.20.1560 228 QSVVSRR|VS 0.106 . LmxM.20.1560 233 RRVSALR|AP 0.090 . LmxM.20.1560 246 TTFEGGR|GS 0.090 . LmxM.20.1560 257 VIPDTVR|MR 0.077 . LmxM.20.1560 259 PDTVRMR|GT 0.091 . LmxM.20.1560 263 RMRGTLR|CL 0.090 . LmxM.20.1560 267 TLRCLDR|DT 0.153 . LmxM.20.1560 272 DRDTQAR|VP 0.099 . LmxM.20.1560 286 IIAGITK|AH 0.076 . LmxM.20.1560 308 VTYNDPK|AY 0.069 . LmxM.20.1560 314 KAYEVVK|SV 0.110 . LmxM.20.1560 323 AEEMLGK|DA 0.077 . LmxM.20.1560 329 KDAFVVK|EE 0.062 . LmxM.20.1560 356 YALLGVK|PC 0.058 . LmxM.20.1560 362 KPCGDGK|AP 0.064 . LmxM.20.1560 372 AHNCMFR|VN 0.137 . LmxM.20.1560 390 LHVNAIR|RL 0.070 . LmxM.20.1560 391 HVNAIRR|LL 0.160 . ____________________________^_________________

  • Fasta :-

    >LmxM.20.1560 ATGACGTCACCGATAAGCGCTCTGATTCAGGTGGTGCAGCCTGAGGTGGTGCAGTGGCGC CGCCACATCCACGAGTATCCATATGTTGCGTATGAGGAGCAGCCCACCGCCGACTACGTG GCGGACGTCCTCAGCAGCATGCCCGCACCGCTGGACATTCGCCGGCTGACGCCGAACAGC GTCGTGGCGGACCTGCGGGGTGGCGCTGGCGAGGGCCCCATGTACGCCCTGCGCGCCGAC ATGGATGCACTGCCGCTGCAGGAGGAGAGTGGTGAGCCCTTCAGCTCGAAGCGGCCAGGC GTGATGCACGCGTGTGGCCACGATGCCCACACGGCGATGCTGCTTGGGGCGGTGAAGGTG CTGTGTCAGATGCGCGACCGCATCCGTGGCACTGTTCGCTTTGTTTTCCAGCACGCCGAA GAGGTGGTCCCGAGTGGTGCGAAGCAGCTGGTGGGCCTTGGTGTGTTGGATGGCGTGTCC ATGATCTTTGGGCTACATGTCGCTGCAGAGTACCCTGTCGGCACCATCTCGACCCGACAG GGCACCCTCTGCGGTGCGTGCAACGACTTTGACATTGTGATCCGCGGTGCTGGCGGCCAT GCCTCGCAGCCGGAGCTGTGTGTCGACCCCATTCTCATTGCCTCCGAGGTCGTGGCAAAC CTCCAGTCCGTTGTATCACGCCGCGTGAGCGCGCTGAGGGCTCCTGTACTGAGCATTACC ACCTTCGAGGGCGGGAGAGGAAGCTACAACGTGATCCCGGACACCGTGCGCATGCGCGGC ACACTGCGGTGCCTCGACCGCGACACTCAGGCTCGGGTGCCCTCTCTGATGGAGGAGATC ATCGCCGGCATCACAAAGGCGCACGGTGCCCAGTACGAGCTGAGCTGGCTGGAGCCCAAC ATCGTGACGTACAACGACCCGAAGGCGTACGAGGTGGTGAAGAGCGTAGCTGAGGAGATG CTTGGTAAAGATGCGTTTGTTGTGAAGGAGGAGCCGATGTTCGGCGTGGAGGACTTCTCC GAGTACCAGGCAGTGATCCCAGGTTGTTATGCTTTGCTAGGAGTGAAGCCATGCGGTGAT GGGAAAGCTCCGTTGGCGCACAACTGCATGTTCCGAGTCAACGAGGACGCCTTTGCGCAC GGGATCGGGCTCCACGTGAATGCCATCCGCCGTCTGCTGATTGATTCGTAA
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  • Fasta :-

    MTSPISALIQVVQPEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNS VVADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKV LCQMRDRIRGTVRFVFQHAEEVVPSGAKQLVGLGVLDGVSMIFGLHVAAEYPVGTISTRQ GTLCGACNDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALRAPVLSIT TFEGGRGSYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPN IVTYNDPKAYEVVKSVAEEMLGKDAFVVKEEPMFGVEDFSEYQAVIPGCYALLGVKPCGD GKAPLAHNCMFRVNEDAFAHGIGLHVNAIRRLLIDS

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.20.1560230 SSRRVSALRA0.996unspLmxM.20.1560230 SSRRVSALRA0.996unspLmxM.20.1560230 SSRRVSALRA0.996unspLmxM.20.156057 TIRRLTPNSV0.99unspLmxM.20.156095 SGEPFSSKRP0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India