LmxM.20.1570 | amidohydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.20.1570OTHER0.9998420.0001140.000044
No Results

  • Fasta :-

    >LmxM.20.1570 MPSSISLIDAVKNEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSV VADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVL CQMRDRIRGTVRFVFQHAEEVVPSGAKQLVGLGVLDGVSMIFGLHVAAEYPVGTISTRQG TLCGACNDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALRAPVLSITT FEGGRGSYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPNI VTYNDPKAYEVVKSVAEEMLGKDAFVVKEEPMFGVEDFSEYQAVIPGCFSLLGIRDEAFG SVYTEHSSKFKIEESALQVGVMMHVGTIVKLMM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/229 Sequence name : 229 Sequence length : 393 VALUES OF COMPUTED PARAMETERS Coef20 : 4.333 CoefTot : 0.205 ChDiff : -14 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.271 1.665 0.153 0.669 MesoH : -0.044 0.698 -0.134 0.336 MuHd_075 : 23.524 21.202 7.886 4.706 MuHd_095 : 21.134 20.504 6.945 4.379 MuHd_100 : 21.340 20.697 5.916 5.321 MuHd_105 : 18.393 17.177 4.162 5.412 Hmax_075 : 16.217 18.433 3.146 5.460 Hmax_095 : 14.200 16.200 1.923 5.150 Hmax_100 : 17.000 16.900 2.178 5.970 Hmax_105 : 7.700 11.725 -0.231 4.576 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8223 0.1777 DFMC : 0.8588 0.1412
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 393 LmxM.20.1570 MPSSISLIDAVKNEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSVVADLRGGAGEGPMYALRADM 80 DALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVLCQMRDRIRGTVRFVFQHAEEVVPSGAKQLVGLGVLDGVSM 160 IFGLHVAAEYPVGTISTRQGTLCGACNDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALRAPVLSITT 240 FEGGRGSYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPNIVTYNDPKAYEVVKSVAEEML 320 GKDAFVVKEEPMFGVEDFSEYQAVIPGCFSLLGIRDEAFGSVYTEHSSKFKIEESALQVGVMMHVGTIVKLMM 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.20.1570 12 SLIDAVK|NE 0.054 . LmxM.20.1570 19 NEVVQWR|RH 0.093 . LmxM.20.1570 20 EVVQWRR|HI 0.138 . LmxM.20.1570 53 PAPLDIR|RL 0.065 . LmxM.20.1570 54 APLDIRR|LT 0.104 . LmxM.20.1570 65 SVVADLR|GG 0.098 . LmxM.20.1570 77 GPMYALR|AD 0.116 . LmxM.20.1570 96 GEPFSSK|RP 0.067 . LmxM.20.1570 97 EPFSSKR|PG 0.139 . LmxM.20.1570 118 MLLGAVK|VL 0.060 . LmxM.20.1570 124 KVLCQMR|DR 0.097 . LmxM.20.1570 126 LCQMRDR|IR 0.107 . LmxM.20.1570 128 QMRDRIR|GT 0.097 . LmxM.20.1570 132 RIRGTVR|FV 0.174 . LmxM.20.1570 147 VVPSGAK|QL 0.055 . LmxM.20.1570 178 VGTISTR|QG 0.074 . LmxM.20.1570 194 DFDIVIR|GA 0.122 . LmxM.20.1570 226 LQSVVSR|RV 0.188 . LmxM.20.1570 227 QSVVSRR|VS 0.106 . LmxM.20.1570 232 RRVSALR|AP 0.090 . LmxM.20.1570 245 TTFEGGR|GS 0.090 . LmxM.20.1570 256 VIPDTVR|MR 0.077 . LmxM.20.1570 258 PDTVRMR|GT 0.091 . LmxM.20.1570 262 RMRGTLR|CL 0.090 . LmxM.20.1570 266 TLRCLDR|DT 0.153 . LmxM.20.1570 271 DRDTQAR|VP 0.099 . LmxM.20.1570 285 IIAGITK|AH 0.076 . LmxM.20.1570 307 VTYNDPK|AY 0.069 . LmxM.20.1570 313 KAYEVVK|SV 0.110 . LmxM.20.1570 322 AEEMLGK|DA 0.077 . LmxM.20.1570 328 KDAFVVK|EE 0.062 . LmxM.20.1570 355 FSLLGIR|DE 0.066 . LmxM.20.1570 369 YTEHSSK|FK 0.064 . LmxM.20.1570 371 EHSSKFK|IE 0.080 . LmxM.20.1570 390 HVGTIVK|LM 0.055 . ____________________________^_________________

  • Fasta :-

    >LmxM.20.1570 ATGCCGTCCTCAATCTCACTCATCGACGCCGTAAAAAACGAGGTGGTGCAGTGGCGCCGC CACATCCACGAGTATCCATATGTTGCGTATGAGGAGCAGCCCACCGCCGACTACGTGGCG GACGTCCTCAGCAGCATGCCCGCACCGCTGGACATTCGCCGGCTGACGCCGAACAGCGTC GTGGCGGACCTGCGGGGTGGCGCTGGCGAGGGCCCCATGTACGCCCTGCGCGCCGACATG GATGCACTGCCGCTGCAGGAGGAGAGTGGTGAGCCCTTCAGCTCGAAGCGGCCAGGCGTG ATGCACGCGTGTGGCCACGATGCCCACACGGCGATGCTGCTTGGGGCGGTGAAGGTGCTG TGTCAGATGCGCGACCGCATCCGTGGCACTGTTCGCTTTGTTTTCCAGCACGCCGAAGAG GTGGTCCCGAGTGGTGCGAAGCAGCTGGTGGGCCTTGGTGTGTTGGATGGCGTGTCCATG ATCTTTGGGCTACATGTCGCTGCAGAGTACCCTGTCGGCACCATCTCGACCCGACAGGGC ACCCTCTGCGGTGCGTGCAACGACTTTGACATTGTGATCCGCGGTGCTGGCGGCCATGCC TCGCAGCCGGAGCTGTGTGTCGACCCCATTCTCATTGCCTCCGAGGTCGTGGCAAACCTC CAGTCCGTTGTATCACGCCGCGTGAGCGCGCTGAGGGCTCCTGTACTGAGCATTACCACC TTCGAGGGCGGGAGAGGAAGCTACAACGTGATCCCGGACACCGTGCGCATGCGCGGCACA CTGCGGTGCCTCGACCGCGACACTCAGGCTCGGGTGCCCTCTCTGATGGAGGAGATCATC GCCGGCATCACAAAGGCGCACGGTGCCCAGTACGAGCTGAGCTGGCTGGAGCCCAACATC GTGACGTACAACGACCCGAAGGCGTACGAGGTGGTGAAGAGCGTAGCTGAGGAGATGCTT GGTAAAGATGCGTTTGTTGTGAAGGAGGAGCCGATGTTCGGCGTGGAGGACTTCTCCGAG TACCAGGCAGTGATCCCAGGCTGCTTTTCTCTGCTGGGCATTCGTGATGAGGCGTTTGGC TCCGTGTACACGGAGCACAGCTCGAAGTTTAAGATTGAGGAGTCAGCTTTACAGGTCGGT GTGATGATGCACGTGGGCACTATTGTGAAACTGATGATGTAG
  • Download Fasta

  • Fasta :-

    MPSSISLIDAVKNEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSV VADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVL CQMRDRIRGTVRFVFQHAEEVVPSGAKQLVGLGVLDGVSMIFGLHVAAEYPVGTISTRQG TLCGACNDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALRAPVLSITT FEGGRGSYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPNI VTYNDPKAYEVVKSVAEEMLGKDAFVVKEEPMFGVEDFSEYQAVIPGCFSLLGIRDEAFG SVYTEHSSKFKIEESALQVGVMMHVGTIVKLMM

  • title: tetramer interface
  • coordinates: G184,D188,F189,D190,H199,A200,S201,P203,E204,C206,V207,D208,I210,L211,S214,E215,V217,A218,N219,Q221,S222,V224,S225,R226,R227,V228,S229,A230,R232,A233,P234,V235,L236,S237,I238,T239,T240,F241,E242,G243,G244,G246,S247,Y248,N249,V250,I251,P252,R258,G259,T260,R262,E278,I279,A281,G282,I283,A286,H287,V326,E329,E330
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.20.157094 SGEPFSSKRP0.992unspLmxM.20.157094 SGEPFSSKRP0.992unspLmxM.20.157094 SGEPFSSKRP0.992unspLmxM.20.1570229 SSRRVSALRA0.996unspLmxM.20.15706 SPSSISLIDA0.992unspLmxM.20.157056 TIRRLTPNSV0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India