LmxM.24.0620 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.24.0620OTHER0.9996880.0000250.000287
No Results

  • Fasta :-

    >LmxM.24.0620 MDVAHNRSLGFAGTEILFRKIEFERYRKPHVVEYPRSATVLNPQHTRQLRNAMGTQRQGG EHDGSDGDEGAAPRGYSDSDDDDDDPRRVDKATQLCSDAQFRSSLHLLWQTITPVGLGLM NLGNTCFANSVLQALAHTPAVAQYFMNTFRSADSQLGAPFDFAFALAETFRKMQPAPQQG RTSGSGVYRPGQIMSNLRLLSKHFSIGRQSDAHEFAVQLLFSCQKSLLHRLVGSKKVHPR VAHTTALHRICGGYLLSQVTWSRQEEIQQLLRAGKQQEAMDLKMEAKQADGKRAQRASRH GLDPQILRSNTYDPFTILSVELAGHTLQHCLDKFCAVEELDGRSYLSPRQVGVRAKKKLS IHVPPPVLVIHVKRFTPTGNKINKHVPFPLELDITRYCTILSSPSSSPPPPQNHLQPHNG MSSPATAKRSDCQYELNAVCVHEGRSIDYGHYYTLAKAPNGMWYEFNDSHVSRLSEDQLQ QAQVYMLFYSRKPTVAAEKTQSPRQQQHNVRDSAPASASSSAASKLGAGTAVKEDGAVGR ELSDSEVQVLLAKRSAVQRQAGSLNGRRSSSATTAAEKLQLLSDASGGNDEEGHAVEPTS LSLNKTARAQTFKRMQEALPTDSDSDGDDENQDRAYVRRLLTQRNGCAVQDSHIQAGVAA QPSRRGDEHDALASGEAPLKLAKVSLYGGIIKSMKRVLKDGANGGASADTTAPQQQRESP NLRVGRNAVQALHQRKILNTPETVQRPASAPKFQQRIRDPMWEMEMDRGKVKKVKSKEKA PDPFEGVNPFQEVSRGMFDVRGRRRRG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/350 Sequence name : 350 Sequence length : 807 VALUES OF COMPUTED PARAMETERS Coef20 : 4.002 CoefTot : 0.000 ChDiff : 22 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.335 1.053 0.123 0.546 MesoH : 0.242 0.456 -0.237 0.295 MuHd_075 : 22.141 12.562 6.477 3.160 MuHd_095 : 14.663 7.714 2.864 2.989 MuHd_100 : 3.759 0.700 0.762 1.282 MuHd_105 : 8.014 4.813 3.615 0.471 Hmax_075 : 15.100 15.200 2.702 5.420 Hmax_095 : 10.763 9.975 0.413 4.165 Hmax_100 : 6.400 8.000 -0.474 3.360 Hmax_105 : 8.500 12.000 1.270 4.880 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6224 0.3776 DFMC : 0.6317 0.3683
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 807 LmxM.24.0620 MDVAHNRSLGFAGTEILFRKIEFERYRKPHVVEYPRSATVLNPQHTRQLRNAMGTQRQGGEHDGSDGDEGAAPRGYSDSD 80 DDDDDPRRVDKATQLCSDAQFRSSLHLLWQTITPVGLGLMNLGNTCFANSVLQALAHTPAVAQYFMNTFRSADSQLGAPF 160 DFAFALAETFRKMQPAPQQGRTSGSGVYRPGQIMSNLRLLSKHFSIGRQSDAHEFAVQLLFSCQKSLLHRLVGSKKVHPR 240 VAHTTALHRICGGYLLSQVTWSRQEEIQQLLRAGKQQEAMDLKMEAKQADGKRAQRASRHGLDPQILRSNTYDPFTILSV 320 ELAGHTLQHCLDKFCAVEELDGRSYLSPRQVGVRAKKKLSIHVPPPVLVIHVKRFTPTGNKINKHVPFPLELDITRYCTI 400 LSSPSSSPPPPQNHLQPHNGMSSPATAKRSDCQYELNAVCVHEGRSIDYGHYYTLAKAPNGMWYEFNDSHVSRLSEDQLQ 480 QAQVYMLFYSRKPTVAAEKTQSPRQQQHNVRDSAPASASSSAASKLGAGTAVKEDGAVGRELSDSEVQVLLAKRSAVQRQ 560 AGSLNGRRSSSATTAAEKLQLLSDASGGNDEEGHAVEPTSLSLNKTARAQTFKRMQEALPTDSDSDGDDENQDRAYVRRL 640 LTQRNGCAVQDSHIQAGVAAQPSRRGDEHDALASGEAPLKLAKVSLYGGIIKSMKRVLKDGANGGASADTTAPQQQRESP 720 NLRVGRNAVQALHQRKILNTPETVQRPASAPKFQQRIRDPMWEMEMDRGKVKKVKSKEKAPDPFEGVNPFQEVSRGMFDV 800 RGRRRRG 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................P................................................... 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 .....P. 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LmxM.24.0620 7 MDVAHNR|SL 0.204 . LmxM.24.0620 19 GTEILFR|KI 0.086 . LmxM.24.0620 20 TEILFRK|IE 0.074 . LmxM.24.0620 25 RKIEFER|YR 0.088 . LmxM.24.0620 27 IEFERYR|KP 0.090 . LmxM.24.0620 28 EFERYRK|PH 0.117 . LmxM.24.0620 36 HVVEYPR|SA 0.145 . LmxM.24.0620 47 LNPQHTR|QL 0.111 . LmxM.24.0620 50 QHTRQLR|NA 0.326 . LmxM.24.0620 57 NAMGTQR|QG 0.096 . LmxM.24.0620 74 DEGAAPR|GY 0.115 . LmxM.24.0620 87 DDDDDPR|RV 0.105 . LmxM.24.0620 88 DDDDPRR|VD 0.096 . LmxM.24.0620 91 DPRRVDK|AT 0.133 . LmxM.24.0620 102 CSDAQFR|SS 0.134 . LmxM.24.0620 150 YFMNTFR|SA 0.249 . LmxM.24.0620 171 ALAETFR|KM 0.099 . LmxM.24.0620 172 LAETFRK|MQ 0.074 . LmxM.24.0620 181 PAPQQGR|TS 0.098 . LmxM.24.0620 189 SGSGVYR|PG 0.094 . LmxM.24.0620 198 QIMSNLR|LL 0.095 . LmxM.24.0620 202 NLRLLSK|HF 0.073 . LmxM.24.0620 208 KHFSIGR|QS 0.112 . LmxM.24.0620 225 LLFSCQK|SL 0.075 . LmxM.24.0620 230 QKSLLHR|LV 0.158 . LmxM.24.0620 235 HRLVGSK|KV 0.082 . LmxM.24.0620 236 RLVGSKK|VH 0.090 . LmxM.24.0620 240 SKKVHPR|VA 0.165 . LmxM.24.0620 249 HTTALHR|IC 0.095 . LmxM.24.0620 263 SQVTWSR|QE 0.092 . LmxM.24.0620 272 EIQQLLR|AG 0.088 . LmxM.24.0620 275 QLLRAGK|QQ 0.135 . LmxM.24.0620 283 QEAMDLK|ME 0.063 . LmxM.24.0620 287 DLKMEAK|QA 0.093 . LmxM.24.0620 292 AKQADGK|RA 0.069 . LmxM.24.0620 293 KQADGKR|AQ 0.256 . LmxM.24.0620 296 DGKRAQR|AS 0.279 . LmxM.24.0620 299 RAQRASR|HG 0.184 . LmxM.24.0620 308 LDPQILR|SN 0.103 . LmxM.24.0620 333 LQHCLDK|FC 0.077 . LmxM.24.0620 343 VEELDGR|SY 0.078 . LmxM.24.0620 349 RSYLSPR|QV 0.150 . LmxM.24.0620 354 PRQVGVR|AK 0.092 . LmxM.24.0620 356 QVGVRAK|KK 0.061 . LmxM.24.0620 357 VGVRAKK|KL 0.261 . LmxM.24.0620 358 GVRAKKK|LS 0.126 . LmxM.24.0620 373 VLVIHVK|RF 0.066 . LmxM.24.0620 374 LVIHVKR|FT 0.290 . LmxM.24.0620 381 FTPTGNK|IN 0.052 . LmxM.24.0620 384 TGNKINK|HV 0.083 . LmxM.24.0620 396 LELDITR|YC 0.072 . LmxM.24.0620 428 SSPATAK|RS 0.065 . LmxM.24.0620 429 SPATAKR|SD 0.543 *ProP* LmxM.24.0620 445 VCVHEGR|SI 0.157 . LmxM.24.0620 457 HYYTLAK|AP 0.060 . LmxM.24.0620 473 NDSHVSR|LS 0.204 . LmxM.24.0620 491 YMLFYSR|KP 0.066 . LmxM.24.0620 492 MLFYSRK|PT 0.126 . LmxM.24.0620 499 PTVAAEK|TQ 0.064 . LmxM.24.0620 504 EKTQSPR|QQ 0.092 . LmxM.24.0620 511 QQQHNVR|DS 0.115 . LmxM.24.0620 525 SSSAASK|LG 0.062 . LmxM.24.0620 533 GAGTAVK|ED 0.074 . LmxM.24.0620 540 EDGAVGR|EL 0.178 . LmxM.24.0620 553 VQVLLAK|RS 0.058 . LmxM.24.0620 554 QVLLAKR|SA 0.262 . LmxM.24.0620 559 KRSAVQR|QA 0.195 . LmxM.24.0620 567 AGSLNGR|RS 0.103 . LmxM.24.0620 568 GSLNGRR|SS 0.215 . LmxM.24.0620 578 ATTAAEK|LQ 0.052 . LmxM.24.0620 605 TSLSLNK|TA 0.071 . LmxM.24.0620 608 SLNKTAR|AQ 0.144 . LmxM.24.0620 613 ARAQTFK|RM 0.076 . LmxM.24.0620 614 RAQTFKR|MQ 0.253 . LmxM.24.0620 634 DDENQDR|AY 0.085 . LmxM.24.0620 638 QDRAYVR|RL 0.106 . LmxM.24.0620 639 DRAYVRR|LL 0.202 . LmxM.24.0620 644 RRLLTQR|NG 0.099 . LmxM.24.0620 664 VAAQPSR|RG 0.081 . LmxM.24.0620 665 AAQPSRR|GD 0.156 . LmxM.24.0620 680 SGEAPLK|LA 0.066 . LmxM.24.0620 683 APLKLAK|VS 0.059 . LmxM.24.0620 692 LYGGIIK|SM 0.079 . LmxM.24.0620 695 GIIKSMK|RV 0.075 . LmxM.24.0620 696 IIKSMKR|VL 0.174 . LmxM.24.0620 699 SMKRVLK|DG 0.189 . LmxM.24.0620 717 TAPQQQR|ES 0.079 . LmxM.24.0620 723 RESPNLR|VG 0.089 . LmxM.24.0620 726 PNLRVGR|NA 0.424 . LmxM.24.0620 735 VQALHQR|KI 0.087 . LmxM.24.0620 736 QALHQRK|IL 0.091 . LmxM.24.0620 746 TPETVQR|PA 0.136 . LmxM.24.0620 752 RPASAPK|FQ 0.081 . LmxM.24.0620 756 APKFQQR|IR 0.126 . LmxM.24.0620 758 KFQQRIR|DP 0.119 . LmxM.24.0620 768 WEMEMDR|GK 0.095 . LmxM.24.0620 770 MEMDRGK|VK 0.061 . LmxM.24.0620 772 MDRGKVK|KV 0.096 . LmxM.24.0620 773 DRGKVKK|VK 0.158 . LmxM.24.0620 775 GKVKKVK|SK 0.132 . LmxM.24.0620 777 VKKVKSK|EK 0.069 . LmxM.24.0620 779 KVKSKEK|AP 0.073 . LmxM.24.0620 795 PFQEVSR|GM 0.108 . LmxM.24.0620 801 RGMFDVR|GR 0.087 . LmxM.24.0620 803 MFDVRGR|RR 0.077 . LmxM.24.0620 804 FDVRGRR|RR 0.270 . LmxM.24.0620 805 DVRGRRR|RG 0.107 . LmxM.24.0620 806 VRGRRRR|G- 0.662 *ProP* ____________________________^_________________

  • Fasta :-

    >LmxM.24.0620 ATGGACGTCGCGCATAATCGGTCGCTCGGGTTCGCGGGAACGGAGATTTTGTTCCGCAAG ATCGAGTTTGAGCGCTATCGGAAACCGCACGTCGTCGAATACCCCCGTAGCGCCACTGTC CTCAACCCGCAGCACACGCGTCAGCTCCGCAATGCAATGGGCACGCAGCGGCAGGGTGGC GAACACGACGGCAGCGACGGCGACGAGGGAGCGGCGCCCCGTGGATACTCGGACAGCGAC GACGACGACGATGACCCGCGGCGCGTCGACAAGGCGACACAGCTGTGCTCCGACGCGCAG TTTCGCAGCAGCCTACACTTGCTCTGGCAGACCATCACGCCTGTTGGGCTGGGGCTCATG AACCTTGGTAACACGTGCTTCGCGAACAGCGTGCTGCAAGCGCTGGCTCATACGCCGGCG GTGGCACAGTACTTCATGAACACGTTCCGTTCAGCAGACAGCCAGCTTGGCGCCCCCTTC GACTTTGCCTTCGCCCTTGCCGAGACGTTTCGCAAGATGCAGCCCGCGCCACAGCAGGGT CGAACCAGCGGCAGCGGTGTGTACCGACCTGGGCAGATCATGAGCAACCTCCGTCTGCTC TCAAAACACTTCTCCATTGGGCGGCAGAGCGACGCGCACGAGTTTGCGGTGCAACTTCTC TTTTCGTGTCAGAAATCGCTGCTTCACCGCCTCGTCGGCTCCAAGAAGGTGCACCCACGG GTGGCGCACACCACCGCGCTTCACCGCATCTGCGGCGGCTACCTGCTCTCACAGGTGACG TGGTCGCGCCAGGAAGAGATTCAGCAGCTGCTGCGCGCCGGCAAGCAGCAGGAGGCAATG GATCTCAAGATGGAGGCAAAGCAAGCTGATGGGAAGCGGGCACAGCGCGCCTCACGGCAC GGCCTCGATCCTCAGATCCTGCGCTCCAATACCTACGACCCCTTTACGATTCTCTCGGTG GAGTTGGCGGGGCACACGCTGCAGCACTGCCTTGACAAGTTCTGCGCGGTCGAGGAACTC GATGGCCGCTCCTACCTGTCCCCACGCCAGGTCGGCGTGCGCGCGAAGAAGAAGCTAAGC ATCCACGTCCCGCCACCCGTGCTCGTCATCCACGTGAAGCGCTTTACTCCCACCGGCAAC AAGATTAACAAGCACGTGCCGTTCCCGCTGGAGCTGGACATAACCCGCTACTGCACCATA CTGTCGTCGCCGTCATCGTCGCCGCCGCCGCCGCAGAATCACCTGCAGCCGCACAATGGT ATGTCCTCCCCAGCGACAGCGAAGAGATCCGATTGCCAGTACGAGCTCAACGCCGTATGC GTTCACGAGGGACGTTCCATCGACTACGGCCACTACTACACCCTGGCCAAGGCCCCTAAT GGCATGTGGTACGAGTTCAACGACAGCCACGTTAGTCGTCTTTCGGAGGACCAGCTGCAA CAGGCACAGGTGTACATGCTCTTCTACTCCCGCAAGCCCACGGTCGCTGCTGAGAAGACG CAGTCGCCCCGTCAGCAGCAGCACAACGTCCGCGACAGCGCACCGGCCTCTGCGTCTTCC TCCGCCGCCTCCAAGCTCGGCGCGGGGACGGCAGTGAAAGAGGACGGTGCTGTTGGGCGA GAGCTGAGCGATTCGGAGGTGCAGGTACTCCTAGCGAAGCGAAGCGCTGTGCAGCGGCAG GCAGGCAGTTTAAACGGGCGTCGCTCCTCCTCGGCCACGACAGCTGCAGAGAAGCTGCAA CTCCTGTCGGACGCTTCTGGCGGCAACGATGAAGAGGGCCACGCCGTCGAGCCCACGTCT TTGTCGTTGAACAAGACTGCCCGGGCGCAGACCTTCAAGCGCATGCAAGAGGCGCTTCCA ACGGACTCGGACAGCGACGGCGACGATGAAAACCAGGACCGCGCATATGTGCGCCGGCTG CTGACACAGCGGAACGGATGTGCAGTGCAAGACAGCCACATCCAGGCAGGCGTGGCGGCA CAACCCTCACGACGAGGTGACGAGCACGACGCACTGGCGAGCGGCGAGGCACCGCTCAAG TTGGCCAAGGTGTCACTGTATGGCGGCATCATTAAGTCGATGAAGCGCGTGTTGAAGGAC GGCGCCAACGGTGGTGCGTCCGCCGACACAACGGCGCCGCAGCAGCAGCGGGAGAGCCCA AACCTTCGGGTTGGCCGGAACGCCGTGCAAGCACTGCATCAGCGCAAGATACTCAACACC CCTGAGACGGTGCAGCGACCGGCATCTGCACCCAAGTTCCAGCAGCGCATCCGTGATCCC ATGTGGGAGATGGAGATGGATCGCGGCAAGGTGAAGAAGGTCAAGTCGAAGGAGAAGGCG CCGGATCCGTTTGAAGGCGTCAACCCCTTCCAGGAAGTGTCGCGAGGCATGTTCGACGTG CGTGGACGGCGGCGTCGGGGGTAG
  • Download Fasta

  • Fasta :-

    MDVAHNRSLGFAGTEILFRKIEFERYRKPHVVEYPRSATVLNPQHTRQLRNAMGTQRQGG EHDGSDGDEGAAPRGYSDSDDDDDDPRRVDKATQLCSDAQFRSSLHLLWQTITPVGLGLM NLGNTCFANSVLQALAHTPAVAQYFMNTFRSADSQLGAPFDFAFALAETFRKMQPAPQQG RTSGSGVYRPGQIMSNLRLLSKHFSIGRQSDAHEFAVQLLFSCQKSLLHRLVGSKKVHPR VAHTTALHRICGGYLLSQVTWSRQEEIQQLLRAGKQQEAMDLKMEAKQADGKRAQRASRH GLDPQILRSNTYDPFTILSVELAGHTLQHCLDKFCAVEELDGRSYLSPRQVGVRAKKKLS IHVPPPVLVIHVKRFTPTGNKINKHVPFPLELDITRYCTILSSPSSSPPPPQNHLQPHNG MSSPATAKRSDCQYELNAVCVHEGRSIDYGHYYTLAKAPNGMWYEFNDSHVSRLSEDQLQ QAQVYMLFYSRKPTVAAEKTQSPRQQQHNVRDSAPASASSSAASKLGAGTAVKEDGAVGR ELSDSEVQVLLAKRSAVQRQAGSLNGRRSSSATTAAEKLQLLSDASGGNDEEGHAVEPTS LSLNKTARAQTFKRMQEALPTDSDSDGDDENQDRAYVRRLLTQRNGCAVQDSHIQAGVAA QPSRRGDEHDALASGEAPLKLAKVSLYGGIIKSMKRVLKDGANGGASADTTAPQQQRESP NLRVGRNAVQALHQRKILNTPETVQRPASAPKFQQRIRDPMWEMEMDRGKVKKVKSKEKA PDPFEGVNPFQEVSRGMFDVRGRRRRG

  • title: Active Site
  • coordinates: N121,C126,H451,D468
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.24.0620298 SAQRASRHGL0.992unspLmxM.24.0620298 SAQRASRHGL0.992unspLmxM.24.0620298 SAQRASRHGL0.992unspLmxM.24.0620569 SNGRRSSSAT0.992unspLmxM.24.0620623 SLPTDSDSDG0.995unspLmxM.24.0620625 STDSDSDGDD0.997unspLmxM.24.0620776 SKKVKSKEKA0.994unspLmxM.24.062065 SEHDGSDGDE0.993unspLmxM.24.062077 SPRGYSDSDD0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India